Wall clock time and date at job start Tue Mar 31 2020 16:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46996 * 2 1 4 4 N 1.46501 * 109.47054 * 119.99431 * 2 1 3 5 5 C 1.46499 * 120.00439 * 304.82892 * 4 2 1 6 6 C 1.50697 * 109.46947 * 269.99496 * 5 4 2 7 7 H 1.08004 * 120.00070 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99893 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00212 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47116 * 90.00187 * 10 8 6 12 12 H 1.48499 * 109.47513 * 210.00373 * 10 8 6 13 13 H 1.48508 * 109.47098 * 330.00598 * 10 8 6 14 14 C 1.34781 * 119.99681 * 124.82692 * 4 2 1 15 15 O 1.21644 * 120.00070 * 185.27792 * 14 4 2 16 16 C 1.47094 * 119.99992 * 5.27182 * 14 4 2 17 17 C 1.36246 * 120.44862 * 75.29845 * 16 14 4 18 18 N 1.35497 * 122.19717 * 180.02562 * 17 16 14 19 19 C 1.46507 * 118.72244 * 179.97438 * 18 17 16 20 20 C 1.34672 * 122.55628 * 0.24911 * 18 17 16 21 21 O 1.21714 * 120.20956 * 179.72025 * 20 18 17 22 22 C 1.46835 * 119.57387 * 359.47851 * 20 18 17 23 23 C 1.39447 * 121.92567 * 180.25555 * 22 20 18 24 24 C 1.37756 * 119.53565 * 180.27189 * 23 22 20 25 25 C 1.38840 * 120.69737 * 359.97438 * 24 23 22 26 26 C 1.37840 * 120.68653 * 359.97438 * 25 24 23 27 27 C 1.39205 * 119.54290 * 0.04361 * 26 25 24 28 28 H 1.09001 * 109.46873 * 300.00347 * 1 2 3 29 29 H 1.08993 * 109.46820 * 59.99738 * 1 2 3 30 30 H 1.08997 * 109.46562 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47195 * 240.00047 * 2 1 3 32 32 H 1.09002 * 109.47037 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46943 * 299.99836 * 3 2 1 34 34 H 1.08997 * 109.47110 * 59.99995 * 3 2 1 35 35 H 1.08999 * 109.46718 * 30.00083 * 5 4 2 36 36 H 1.08997 * 109.46995 * 149.99706 * 5 4 2 37 37 H 0.97002 * 120.00400 * 179.97438 * 9 8 6 38 38 H 1.08000 * 118.90009 * 359.97438 * 17 16 14 39 39 H 1.08997 * 109.46750 * 89.99655 * 19 18 17 40 40 H 1.08998 * 109.46931 * 330.00155 * 19 18 17 41 41 H 1.08994 * 109.46774 * 209.99771 * 19 18 17 42 42 H 1.08002 * 120.23124 * 0.24660 * 23 22 20 43 43 H 1.08000 * 119.65183 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.65925 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.22840 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.5794 -0.2546 2.5242 6 6 2.5286 0.7919 3.0486 7 1 3.3740 1.1016 2.4520 8 6 2.3172 1.3547 4.2893 9 7 1.2874 0.9779 5.0155 10 14 3.4932 2.6524 4.9391 11 1 3.0236 3.9986 4.5235 12 1 3.5401 2.5803 6.4216 13 1 4.8510 2.4101 4.3885 14 6 2.8715 -1.7269 1.0750 15 8 3.2019 -2.3610 2.0591 16 6 3.4029 -2.0912 -0.2473 17 6 4.3742 -1.3364 -0.8330 18 7 4.8885 -1.6390 -2.0495 19 6 5.9307 -0.7741 -2.6082 20 6 4.4752 -2.7008 -2.7673 21 8 4.9634 -2.9300 -3.8585 22 6 3.4355 -3.5833 -2.2229 23 6 2.9750 -4.6988 -2.9216 24 6 1.9934 -5.4901 -2.3666 25 6 1.4600 -5.1885 -1.1207 26 6 1.9020 -4.0912 -0.4132 27 6 2.8929 -3.2781 -0.9560 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.5764 0.1663 2.4552 36 1 1.5694 -1.1082 3.2019 37 1 1.1388 1.3735 5.8886 38 1 4.7461 -0.4674 -0.3105 39 1 6.9101 -1.1383 -2.2979 40 1 5.7904 0.2443 -2.2460 41 1 5.8670 -0.7848 -3.6962 42 1 3.3846 -4.9403 -3.8913 43 1 1.6351 -6.3542 -2.9062 44 1 0.6914 -5.8207 -0.7012 45 1 1.4822 -3.8638 0.5555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578201487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:14 Heat of formation + Delta-G solvation = -24.242876 kcal Electronic energy + Delta-G solvation = -28818.571490 eV Core-core repulsion = 24994.259947 eV Total energy + Delta-G solvation = -3824.311543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.39816 -39.27120 -38.39337 -36.87146 -35.96279 -33.21104 -32.72209 -31.36088 -30.87742 -29.68193 -27.86552 -27.11861 -26.75436 -24.45678 -23.42649 -23.12879 -22.09092 -21.04418 -18.95297 -18.33920 -17.92399 -17.21327 -16.47223 -16.34318 -16.05028 -15.39235 -15.31972 -14.64405 -14.62131 -14.28469 -14.13674 -13.69184 -13.55994 -13.51637 -13.34193 -13.03818 -12.72351 -12.63177 -12.41135 -12.22422 -11.81478 -11.72631 -11.59018 -11.53949 -11.25522 -11.19608 -10.99133 -10.88342 -10.61998 -10.41041 -10.20652 -10.06125 -9.60333 -9.57436 -9.11487 -9.10361 -8.46305 -7.74775 -7.70829 -6.08003 -4.11891 0.66765 0.80967 1.95293 2.46564 2.76126 3.25716 3.27243 3.34068 3.36687 3.78180 3.92767 4.28526 4.41231 4.50228 4.72265 4.80457 4.85146 4.97021 5.10482 5.13937 5.24534 5.26761 5.28092 5.39021 5.42421 5.54276 5.58292 5.67697 5.77137 5.92850 5.99574 6.11360 6.14819 6.21811 6.28161 6.30929 6.36034 6.43221 6.57150 6.77323 6.87607 6.96437 7.08302 7.42766 7.50080 7.72864 7.88300 8.19498 8.35165 8.83590 9.00174 9.52408 11.00103 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.004115 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.377431 B = 6803.395522 C = 7587.520915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.158 4.158 4 N -0.582 5.582 5 C 0.243 3.757 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.566 3.434 15 O -0.531 6.531 16 C -0.191 4.191 17 C 0.142 3.858 18 N -0.516 5.516 19 C 0.062 3.938 20 C 0.547 3.453 21 O -0.529 6.529 22 C -0.154 4.154 23 C -0.050 4.050 24 C -0.141 4.141 25 C -0.081 4.081 26 C -0.115 4.115 27 C 0.031 3.969 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.165 0.835 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 -5.258 -16.326 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 C -0.216 4.216 4 N -0.313 5.313 5 C 0.125 3.875 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.351 3.649 15 O -0.408 6.408 16 C -0.200 4.200 17 C 0.019 3.981 18 N -0.230 5.230 19 C -0.079 4.079 20 C 0.342 3.658 21 O -0.408 6.408 22 C -0.157 4.157 23 C -0.069 4.069 24 C -0.159 4.159 25 C -0.099 4.099 26 C -0.133 4.133 27 C 0.028 3.972 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.182 0.818 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.658 -5.650 -16.295 17.327 hybrid contribution 0.677 0.913 0.599 1.285 sum 2.335 -4.737 -15.696 16.561 Atomic orbital electron populations 1.22126 0.95264 1.01935 1.02499 1.20984 0.94399 0.93740 0.87958 1.22178 1.00867 0.96002 1.02561 1.48345 1.43885 1.30086 1.09002 1.19327 0.95421 0.95869 0.76920 1.21403 1.11151 1.21452 1.02083 0.92373 1.24911 0.95494 0.97087 0.96517 1.69922 1.28393 1.42927 1.11953 0.86561 0.81370 0.81620 0.78238 1.20692 1.21152 1.19965 1.17486 0.79892 0.80999 0.86555 1.90808 1.59062 1.52321 1.38569 1.20224 1.03247 0.98322 0.98170 1.21475 0.93595 0.98276 0.84741 1.44667 1.35879 1.25890 1.16579 1.22150 0.90069 0.94067 1.01615 1.18167 0.82697 0.80380 0.84525 1.90818 1.57950 1.71894 1.20170 1.19681 1.00762 0.99110 0.96192 1.20980 0.94780 0.91998 0.99157 1.21121 0.97992 1.00492 0.96272 1.21335 0.98352 0.96076 0.94134 1.21189 0.96728 0.94850 1.00528 1.18729 0.93985 0.92777 0.91663 0.91045 0.92320 0.92821 0.90860 0.93176 0.93215 0.89824 0.94422 0.93784 0.92728 0.81818 0.90826 0.89479 0.88945 0.84671 0.85318 0.85260 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.07 37.16 0.34 -2.00 16 2 C 0.13 2.11 3.04 -67.92 -0.21 1.91 16 3 C -0.16 -2.40 8.60 37.16 0.32 -2.08 16 4 N -0.58 -11.52 2.39 -168.85 -0.40 -11.93 16 5 C 0.24 5.92 4.76 -5.20 -0.02 5.90 16 6 C -0.52 -13.66 7.85 -34.44 -0.27 -13.93 16 7 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 10 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.57 11.39 5.98 -12.67 -0.08 11.32 16 15 O -0.53 -13.01 16.66 5.24 0.09 -12.92 16 16 C -0.19 -3.10 3.89 -103.32 -0.40 -3.51 16 17 C 0.14 1.95 9.34 -16.65 -0.16 1.79 16 18 N -0.52 -6.55 2.98 -124.89 -0.37 -6.93 16 19 C 0.06 0.57 10.28 59.85 0.62 1.18 16 20 C 0.55 8.00 7.61 -12.83 -0.10 7.90 16 21 O -0.53 -8.52 15.99 5.18 0.08 -8.44 16 22 C -0.15 -2.22 5.89 -104.86 -0.62 -2.83 16 23 C -0.05 -0.62 9.65 -39.31 -0.38 -1.00 16 24 C -0.14 -1.48 10.01 -39.53 -0.40 -1.87 16 25 C -0.08 -0.92 10.02 -39.50 -0.40 -1.31 16 26 C -0.11 -1.65 9.51 -39.37 -0.37 -2.02 16 27 C 0.03 0.47 5.90 -104.73 -0.62 -0.15 16 28 H 0.07 1.16 6.52 -51.93 -0.34 0.83 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.06 5.98 -51.93 -0.31 0.75 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16 35 H 0.04 0.93 6.19 -51.93 -0.32 0.61 16 36 H 0.04 1.23 7.35 -51.93 -0.38 0.85 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.16 2.02 7.96 -52.49 -0.42 1.60 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.59 7.95 -51.93 -0.41 0.17 16 41 H 0.09 0.85 7.32 -51.93 -0.38 0.47 16 42 H 0.14 1.50 7.78 -52.49 -0.41 1.09 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 45 H 0.14 2.10 7.34 -52.49 -0.39 1.71 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -32.81 373.07 -8.31 -41.12 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.21 Total: 1.42 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.84 Total: 0.87 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.04 Total: -43.54 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.17 Total: -21.36 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.81 -8.31 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578201487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.879 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds