Wall clock time and date at job start Tue Mar 31 2020 16:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46996 * 2 1 4 4 N 1.46501 * 109.47054 * 119.99431 * 2 1 3 5 5 C 1.46499 * 120.00439 * 304.82892 * 4 2 1 6 6 C 1.50697 * 109.46947 * 269.99496 * 5 4 2 7 7 H 1.08004 * 120.00070 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99893 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00212 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47116 * 90.00187 * 10 8 6 12 12 H 1.48499 * 109.47513 * 210.00373 * 10 8 6 13 13 H 1.48508 * 109.47098 * 330.00598 * 10 8 6 14 14 C 1.34781 * 119.99681 * 124.82692 * 4 2 1 15 15 O 1.21644 * 120.00070 * 185.27792 * 14 4 2 16 16 C 1.47094 * 119.99992 * 5.27182 * 14 4 2 17 17 C 1.36246 * 120.44862 * 75.29845 * 16 14 4 18 18 N 1.35497 * 122.19717 * 180.02562 * 17 16 14 19 19 C 1.46507 * 118.72244 * 179.97438 * 18 17 16 20 20 C 1.34672 * 122.55628 * 0.24911 * 18 17 16 21 21 O 1.21714 * 120.20956 * 179.72025 * 20 18 17 22 22 C 1.46835 * 119.57387 * 359.47851 * 20 18 17 23 23 C 1.39447 * 121.92567 * 180.25555 * 22 20 18 24 24 C 1.37756 * 119.53565 * 180.27189 * 23 22 20 25 25 C 1.38840 * 120.69737 * 359.97438 * 24 23 22 26 26 C 1.37840 * 120.68653 * 359.97438 * 25 24 23 27 27 C 1.39205 * 119.54290 * 0.04361 * 26 25 24 28 28 H 1.09001 * 109.46873 * 300.00347 * 1 2 3 29 29 H 1.08993 * 109.46820 * 59.99738 * 1 2 3 30 30 H 1.08997 * 109.46562 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47195 * 240.00047 * 2 1 3 32 32 H 1.09002 * 109.47037 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46943 * 299.99836 * 3 2 1 34 34 H 1.08997 * 109.47110 * 59.99995 * 3 2 1 35 35 H 1.08999 * 109.46718 * 30.00083 * 5 4 2 36 36 H 1.08997 * 109.46995 * 149.99706 * 5 4 2 37 37 H 0.97002 * 120.00400 * 179.97438 * 9 8 6 38 38 H 1.08000 * 118.90009 * 359.97438 * 17 16 14 39 39 H 1.08997 * 109.46750 * 89.99655 * 19 18 17 40 40 H 1.08998 * 109.46931 * 330.00155 * 19 18 17 41 41 H 1.08994 * 109.46774 * 209.99771 * 19 18 17 42 42 H 1.08002 * 120.23124 * 0.24660 * 23 22 20 43 43 H 1.08000 * 119.65183 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.65925 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.22840 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.5794 -0.2546 2.5242 6 6 2.5286 0.7919 3.0486 7 1 3.3740 1.1016 2.4520 8 6 2.3172 1.3547 4.2893 9 7 1.2874 0.9779 5.0155 10 14 3.4932 2.6524 4.9391 11 1 3.0236 3.9986 4.5235 12 1 3.5401 2.5803 6.4216 13 1 4.8510 2.4101 4.3885 14 6 2.8715 -1.7269 1.0750 15 8 3.2019 -2.3610 2.0591 16 6 3.4029 -2.0912 -0.2473 17 6 4.3742 -1.3364 -0.8330 18 7 4.8885 -1.6390 -2.0495 19 6 5.9307 -0.7741 -2.6082 20 6 4.4752 -2.7008 -2.7673 21 8 4.9634 -2.9300 -3.8585 22 6 3.4355 -3.5833 -2.2229 23 6 2.9750 -4.6988 -2.9216 24 6 1.9934 -5.4901 -2.3666 25 6 1.4600 -5.1885 -1.1207 26 6 1.9020 -4.0912 -0.4132 27 6 2.8929 -3.2781 -0.9560 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.5764 0.1663 2.4552 36 1 1.5694 -1.1082 3.2019 37 1 1.1388 1.3735 5.8886 38 1 4.7461 -0.4674 -0.3105 39 1 6.9101 -1.1383 -2.2979 40 1 5.7904 0.2443 -2.2460 41 1 5.8670 -0.7848 -3.6962 42 1 3.3846 -4.9403 -3.8913 43 1 1.6351 -6.3542 -2.9062 44 1 0.6914 -5.8207 -0.7012 45 1 1.4822 -3.8638 0.5555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578201487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:13 Heat of formation + Delta-G solvation = -43.129062 kcal Electronic energy + Delta-G solvation = -28819.390456 eV Core-core repulsion = 24994.259947 eV Total energy + Delta-G solvation = -3825.130509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.49536 -40.77323 -39.41930 -38.02235 -37.54139 -34.94360 -34.06261 -32.44618 -32.35875 -30.84123 -29.31095 -28.37156 -27.99024 -25.81787 -24.72456 -24.35933 -23.43862 -22.35312 -20.23621 -19.42188 -19.10362 -18.53821 -18.47913 -17.55955 -17.13178 -16.93343 -16.35943 -16.28822 -15.78337 -15.57847 -15.44635 -14.91342 -14.86245 -14.66395 -14.42043 -14.31972 -14.08573 -13.77749 -13.69363 -13.34414 -13.31152 -13.21958 -12.88377 -12.74963 -12.73142 -12.54221 -12.34910 -12.27228 -12.22202 -12.07392 -11.67339 -11.49161 -11.30398 -10.83864 -10.56602 -10.50522 -10.10872 -9.45132 -8.82615 -8.15532 -6.27107 -0.34041 -0.25197 0.83653 1.39522 1.41542 1.43570 1.52321 1.71074 1.81105 2.27983 2.47017 2.87476 3.14915 3.20275 3.43944 3.57932 3.77575 3.95235 3.98760 4.09300 4.23498 4.28520 4.32777 4.38149 4.42764 4.43799 4.61858 4.72564 4.77157 4.83099 4.85975 4.94216 5.00382 5.04884 5.14599 5.18029 5.22378 5.28642 5.38343 5.43235 5.45358 5.57092 5.67233 5.83311 5.88715 5.89762 6.13769 6.64328 6.72920 6.81691 7.29734 7.46407 8.92172 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.004115 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.377431 B = 6803.395522 C = 7587.520915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 C -0.153 4.153 4 N -0.582 5.582 5 C 0.261 3.739 6 C -0.525 4.525 7 H 0.062 0.938 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.269 1.269 14 C 0.569 3.431 15 O -0.588 6.588 16 C -0.216 4.216 17 C 0.167 3.833 18 N -0.511 5.511 19 C 0.055 3.945 20 C 0.543 3.457 21 O -0.546 6.546 22 C -0.171 4.171 23 C -0.052 4.052 24 C -0.127 4.127 25 C -0.070 4.070 26 C -0.141 4.141 27 C 0.018 3.982 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.030 0.970 36 H -0.005 1.005 37 H 0.264 0.736 38 H 0.181 0.819 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.149 0.851 43 H 0.169 0.831 44 H 0.157 0.843 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -4.778 -19.203 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.027 3.973 3 C -0.210 4.210 4 N -0.311 5.311 5 C 0.140 3.860 6 C -0.563 4.563 7 H 0.080 0.920 8 C -0.190 4.190 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.194 1.194 14 C 0.356 3.644 15 O -0.469 6.469 16 C -0.225 4.225 17 C 0.043 3.957 18 N -0.224 5.224 19 C -0.085 4.085 20 C 0.340 3.660 21 O -0.427 6.427 22 C -0.174 4.174 23 C -0.071 4.071 24 C -0.144 4.144 25 C -0.088 4.088 26 C -0.159 4.159 27 C 0.016 3.984 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.013 0.987 37 H 0.073 0.927 38 H 0.198 0.802 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.166 0.834 43 H 0.186 0.814 44 H 0.175 0.825 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.492 -5.139 -19.231 20.061 hybrid contribution 0.386 0.686 1.422 1.626 sum 2.877 -4.453 -17.809 18.581 Atomic orbital electron populations 1.22097 0.94358 1.01969 1.02957 1.21291 0.95187 0.94111 0.86734 1.22118 1.01118 0.95108 1.02701 1.48316 1.43740 1.30425 1.08669 1.18776 0.95075 0.93504 0.78616 1.21659 1.11159 1.21280 1.02249 0.92011 1.25774 0.97080 0.99304 0.96889 1.70057 1.30245 1.44410 1.12356 0.85521 0.79299 0.79443 0.77197 1.19119 1.21430 1.19368 1.17987 0.78935 0.79922 0.87509 1.90761 1.61028 1.54075 1.41025 1.19798 1.05447 1.00328 0.96891 1.21565 0.91831 0.97651 0.84668 1.44786 1.35984 1.25764 1.15855 1.22463 0.89420 0.94942 1.01673 1.18290 0.82644 0.80726 0.84389 1.90804 1.58617 1.72448 1.20826 1.19817 1.01300 1.00210 0.96060 1.21276 0.94891 0.91362 0.99527 1.21528 0.96512 1.00841 0.95567 1.21664 0.98147 0.94849 0.94139 1.21142 0.97838 0.96710 1.00247 1.18723 0.94708 0.92770 0.92243 0.93455 0.88841 0.93067 0.88769 0.92771 0.89584 0.93053 0.95215 0.98653 0.92720 0.80186 0.89743 0.86648 0.88862 0.83357 0.81396 0.82537 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 9.07 71.98 0.65 -3.82 16 2 C 0.13 4.02 3.04 45.00 0.14 4.16 16 3 C -0.15 -4.39 8.60 71.98 0.62 -3.77 16 4 N -0.58 -23.91 2.39 -806.35 -1.93 -25.83 16 5 C 0.26 13.47 4.76 85.63 0.41 13.87 16 6 C -0.52 -28.28 7.85 25.60 0.20 -28.08 16 7 H 0.06 3.21 7.59 -2.91 -0.02 3.19 16 8 C 0.01 0.45 5.46 84.66 0.46 0.91 16 9 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 10 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 12 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.57 23.95 5.98 86.57 0.52 24.46 16 15 O -0.59 -30.81 16.66 -4.17 -0.07 -30.88 16 16 C -0.22 -7.07 3.89 -19.02 -0.07 -7.14 16 17 C 0.17 4.35 9.34 83.66 0.78 5.14 16 18 N -0.51 -11.93 2.98 -667.30 -1.99 -13.92 16 19 C 0.05 0.84 10.28 127.77 1.31 2.15 16 20 C 0.54 14.99 7.61 86.51 0.66 15.65 16 21 O -0.55 -16.59 15.99 -4.39 -0.07 -16.66 16 22 C -0.17 -4.69 5.89 -20.02 -0.12 -4.81 16 23 C -0.05 -1.15 9.65 22.45 0.22 -0.93 16 24 C -0.13 -2.26 10.01 22.30 0.22 -2.04 16 25 C -0.07 -1.47 10.02 22.32 0.22 -1.25 16 26 C -0.14 -4.12 9.51 22.41 0.21 -3.90 16 27 C 0.02 0.54 5.90 -19.93 -0.12 0.42 16 28 H 0.05 1.58 6.52 -2.39 -0.02 1.57 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 2.59 5.98 -2.39 -0.01 2.57 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.83 6.92 -2.39 -0.02 1.81 16 35 H 0.03 1.57 6.19 -2.39 -0.01 1.55 16 36 H 0.00 -0.28 7.35 -2.39 -0.02 -0.30 16 37 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.18 4.06 7.96 -2.91 -0.02 4.04 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.12 1.11 7.95 -2.39 -0.02 1.09 16 41 H 0.09 1.46 7.32 -2.39 -0.02 1.45 16 42 H 0.15 2.87 7.78 -2.91 -0.02 2.85 16 43 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.11 3.68 7.34 -2.91 -0.02 3.66 16 Total: -1.00 -75.80 373.07 5.58 -70.22 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.00 Total: 15.41 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.32 Total: 11.02 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.63 Total: -94.33 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.14 Total: -47.53 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -75.80 5.58 -70.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578201487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.089 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds