Wall clock time and date at job start Tue Mar 31 2020 16:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 N 1.46502 * 109.46553 * 119.99790 * 2 1 3 5 5 C 1.46496 * 120.00373 * 295.06121 * 4 2 1 6 6 C 1.50703 * 109.47292 * 270.00814 * 5 4 2 7 7 H 1.08003 * 119.99946 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99980 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99991 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00247 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47020 * 90.00285 * 10 8 6 12 12 H 1.48492 * 109.47391 * 210.00009 * 10 8 6 13 13 H 1.48500 * 109.46925 * 330.00379 * 10 8 6 14 14 C 1.34776 * 119.99851 * 115.06480 * 4 2 1 15 15 O 1.21592 * 120.00200 * 185.11406 * 14 4 2 16 16 C 1.47463 * 120.00007 * 5.11774 * 14 4 2 17 17 C 1.35619 * 118.97280 * 85.02485 * 16 14 4 18 18 C 1.46290 * 119.40055 * 179.97438 * 17 16 14 19 19 C 1.39615 * 121.78515 * 180.02562 * 18 17 16 20 20 C 1.37780 * 119.54039 * 179.97438 * 19 18 17 21 21 C 1.38825 * 120.70005 * 0.02562 * 20 19 18 22 22 C 1.37889 * 120.73677 * 0.02562 * 21 20 19 23 23 C 1.39290 * 119.59684 * 359.97438 * 22 21 20 24 24 C 1.46986 * 121.77238 * 180.02562 * 23 22 21 25 25 O 1.21742 * 120.28448 * 359.96299 * 24 23 22 26 26 N 1.34738 * 119.43333 * 179.97438 * 24 23 22 27 27 C 1.46501 * 118.95588 * 180.02562 * 26 24 23 28 28 H 1.08995 * 109.47257 * 300.00107 * 1 2 3 29 29 H 1.09007 * 109.46678 * 60.00254 * 1 2 3 30 30 H 1.09003 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47257 * 239.99893 * 2 1 3 32 32 H 1.09001 * 109.46798 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47269 * 299.99409 * 3 2 1 34 34 H 1.08998 * 109.47020 * 60.00345 * 3 2 1 35 35 H 1.09004 * 109.46632 * 30.00248 * 5 4 2 36 36 H 1.08992 * 109.47563 * 150.00281 * 5 4 2 37 37 H 0.97000 * 119.99807 * 180.02562 * 9 8 6 38 38 H 1.07989 * 120.29964 * 0.02562 * 17 16 14 39 39 H 1.07996 * 120.22636 * 0.02562 * 19 18 17 40 40 H 1.07996 * 119.64918 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.63251 * 180.27352 * 21 20 19 42 42 H 1.07993 * 120.20134 * 180.02562 * 22 21 20 43 43 H 1.09009 * 109.47121 * 274.91026 * 27 26 24 44 44 H 1.08997 * 109.47109 * 34.90894 * 27 26 24 45 45 H 1.08999 * 109.47664 * 154.91420 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7557 -0.1302 2.5241 6 6 2.8791 0.7978 2.9088 7 1 3.7061 0.9541 2.2320 8 6 2.8515 1.4464 4.1251 9 7 3.8321 2.2559 4.4611 10 14 1.4214 1.1755 5.2960 11 1 1.7261 0.0320 6.1932 12 1 1.2086 2.3996 6.1091 13 1 0.1927 0.8792 4.5164 14 6 2.7090 -1.8415 1.0752 15 8 3.0337 -2.4631 2.0685 16 6 3.0711 -2.3469 -0.2620 17 6 4.2010 -1.8867 -0.8544 18 6 4.5694 -2.3822 -2.1806 19 6 5.7214 -1.9430 -2.8359 20 6 6.0244 -2.4410 -4.0843 21 6 5.1968 -3.3729 -4.6957 22 6 4.0537 -3.8198 -4.0673 23 6 3.7266 -3.3306 -2.8048 24 6 2.5204 -3.7743 -2.0915 25 8 1.7723 -4.5899 -2.5987 26 7 2.2497 -3.2704 -0.8715 27 6 1.0450 -3.7204 -0.1697 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.8171 0.4238 2.5055 36 1 1.6863 -0.9382 3.2523 37 1 3.8129 2.7119 5.3170 38 1 4.8235 -1.1618 -0.3513 39 1 6.3707 -1.2185 -2.3671 40 1 6.9152 -2.1027 -4.5926 41 1 5.4532 -3.7551 -5.6727 42 1 3.4163 -4.5452 -4.5507 43 1 0.1914 -3.1258 -0.4954 44 1 0.8636 -4.7710 -0.3962 45 1 1.1836 -3.5989 0.9046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586763945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:51 Heat of formation + Delta-G solvation = -19.880137 kcal Electronic energy + Delta-G solvation = -28833.923516 eV Core-core repulsion = 25009.801156 eV Total energy + Delta-G solvation = -3824.122360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42540 -39.53205 -38.44695 -36.67948 -36.19844 -33.12275 -32.85033 -31.43805 -31.24203 -30.05702 -28.11125 -27.35734 -26.83117 -24.68990 -23.47037 -22.53344 -21.85213 -21.62619 -19.32642 -18.52548 -17.67921 -17.28649 -16.98009 -16.46030 -15.94517 -15.47118 -15.34711 -14.99673 -14.59056 -14.47675 -14.05187 -13.82515 -13.60442 -13.48754 -13.37198 -13.00274 -12.76280 -12.66193 -12.57568 -12.34419 -12.03807 -11.87023 -11.82290 -11.70778 -11.33900 -11.31434 -11.08007 -10.94727 -10.62658 -10.46700 -10.35103 -10.21660 -9.62513 -9.61264 -9.40790 -9.21055 -8.67073 -7.99924 -7.79501 -6.17184 -4.16440 0.54409 0.75001 1.98893 2.28020 2.71474 3.02961 3.22095 3.27683 3.30641 3.45741 3.83404 4.24319 4.31336 4.37160 4.62302 4.73005 4.78915 5.06261 5.07215 5.09376 5.15738 5.20579 5.23893 5.35627 5.47580 5.48483 5.60105 5.66050 5.74456 5.80474 5.84258 5.94874 6.04871 6.13876 6.20156 6.21362 6.25403 6.38335 6.42148 6.58625 6.67538 6.78968 6.89050 7.02643 7.08321 7.48441 7.78187 7.90975 8.31830 8.53897 8.85742 9.42031 10.95502 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.003883 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.179033 B = 7208.715203 C = 7810.328522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.153 4.153 4 N -0.568 5.568 5 C 0.214 3.786 6 C -0.528 4.528 7 H 0.079 0.921 8 C 0.075 3.925 9 N -0.893 5.893 10 Si 0.871 3.129 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.551 3.449 15 O -0.518 6.518 16 C 0.124 3.876 17 C -0.165 4.165 18 C 0.009 3.991 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.140 4.140 22 C -0.050 4.050 23 C -0.150 4.150 24 C 0.549 3.451 25 O -0.529 6.529 26 N -0.508 5.508 27 C 0.060 3.940 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.265 0.735 38 H 0.156 0.844 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 -6.653 -16.797 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 C -0.211 4.211 4 N -0.299 5.299 5 C 0.094 3.906 6 C -0.566 4.566 7 H 0.097 0.903 8 C -0.127 4.127 9 N -0.531 5.531 10 Si 0.698 3.302 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.334 3.666 15 O -0.394 6.394 16 C 0.020 3.980 17 C -0.189 4.189 18 C 0.008 3.992 19 C -0.138 4.138 20 C -0.103 4.103 21 C -0.158 4.158 22 C -0.069 4.069 23 C -0.153 4.153 24 C 0.344 3.656 25 O -0.408 6.408 26 N -0.226 5.226 27 C -0.081 4.081 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.153 0.847 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.857 -7.344 -16.355 18.024 hybrid contribution -0.528 0.081 0.792 0.955 sum -2.384 -7.263 -15.563 17.339 Atomic orbital electron populations 1.22195 0.95295 1.01801 1.02775 1.21130 0.94113 0.94937 0.87246 1.22088 1.02161 0.94448 1.02373 1.48101 1.51325 1.21408 1.09050 1.19767 0.97549 0.94600 0.78683 1.21263 1.06729 1.25043 1.03594 0.90309 1.24816 0.95814 0.94698 0.97417 1.69879 1.31701 1.29020 1.22534 0.86930 0.83259 0.78139 0.81856 1.19887 1.21030 1.19075 1.17783 0.79816 0.82220 0.86797 1.90860 1.53279 1.57861 1.37415 1.20170 0.92660 0.91570 0.93574 1.21638 0.97612 1.04852 0.94778 1.19009 0.93790 0.93506 0.92932 1.21195 0.96325 1.00953 0.95296 1.21303 0.98913 0.95444 0.94674 1.21158 0.95144 0.98911 1.00633 1.21030 0.96071 0.97333 0.92423 1.19860 0.96434 1.01928 0.97074 1.18138 0.86023 0.81358 0.80088 1.90833 1.50387 1.33500 1.66112 1.45078 1.23179 1.37506 1.16829 1.22189 0.85517 1.02329 0.98095 0.91385 0.91669 0.92977 0.90587 0.91933 0.92997 0.90024 0.94548 0.94319 0.92474 0.82666 0.84599 0.85334 0.85361 0.84653 0.90752 0.89070 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.25 37.16 0.34 -1.78 16 2 C 0.13 1.98 3.16 -67.93 -0.21 1.77 16 3 C -0.15 -2.40 8.36 37.16 0.31 -2.09 16 4 N -0.57 -10.72 2.38 -168.72 -0.40 -11.12 16 5 C 0.21 4.77 3.57 -5.19 -0.02 4.75 16 6 C -0.53 -13.82 8.40 -34.44 -0.29 -14.11 16 7 H 0.08 2.25 7.78 -52.48 -0.41 1.84 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 10 Si 0.87 20.40 27.47 -169.99 -4.67 15.73 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.27 -5.81 6.54 56.52 0.37 -5.45 16 14 C 0.55 10.64 5.18 -12.50 -0.06 10.57 16 15 O -0.52 -12.00 16.31 5.28 0.09 -11.92 16 16 C 0.12 2.02 4.35 -82.36 -0.36 1.66 16 17 C -0.16 -2.43 9.46 -37.28 -0.35 -2.78 16 18 C 0.01 0.12 5.89 -104.94 -0.62 -0.50 16 19 C -0.12 -1.27 9.86 -39.24 -0.39 -1.65 16 20 C -0.08 -0.75 10.01 -39.53 -0.40 -1.15 16 21 C -0.14 -1.28 10.01 -39.49 -0.40 -1.68 16 22 C -0.05 -0.57 9.65 -39.32 -0.38 -0.95 16 23 C -0.15 -2.07 5.90 -104.76 -0.62 -2.69 16 24 C 0.55 8.54 7.62 -12.73 -0.10 8.44 16 25 O -0.53 -9.04 16.11 5.15 0.08 -8.96 16 26 N -0.51 -7.78 3.04 -120.91 -0.37 -8.14 16 27 C 0.06 0.82 9.91 59.85 0.59 1.41 16 28 H 0.07 0.95 6.86 -51.93 -0.36 0.59 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.05 0.64 7.49 -51.93 -0.39 0.25 16 31 H 0.08 1.09 6.07 -51.93 -0.32 0.78 16 32 H 0.06 1.06 7.99 -51.93 -0.41 0.64 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.48 6.95 -51.93 -0.36 1.11 16 35 H 0.04 0.78 5.75 -51.93 -0.30 0.48 16 36 H 0.04 0.93 6.78 -51.93 -0.35 0.58 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.16 2.23 8.05 -52.49 -0.42 1.81 16 39 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.14 1.46 7.77 -52.49 -0.41 1.05 16 43 H 0.07 0.89 7.49 -51.92 -0.39 0.50 16 44 H 0.09 1.17 7.51 -51.93 -0.39 0.78 16 45 H 0.09 1.31 6.34 -51.93 -0.33 0.98 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -32.21 367.66 -8.11 -40.32 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.11 Total: 2.64 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -3.04 Total: 1.19 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.00 Total: -44.54 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.17 Total: -20.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.21 -8.11 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586763945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.440 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds