Wall clock time and date at job start Tue Mar 31 2020 16:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 N 1.46502 * 109.46553 * 119.99790 * 2 1 3 5 5 C 1.46496 * 120.00373 * 295.06121 * 4 2 1 6 6 C 1.50703 * 109.47292 * 270.00814 * 5 4 2 7 7 H 1.08003 * 119.99946 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99980 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99991 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00247 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47020 * 90.00285 * 10 8 6 12 12 H 1.48492 * 109.47391 * 210.00009 * 10 8 6 13 13 H 1.48500 * 109.46925 * 330.00379 * 10 8 6 14 14 C 1.34776 * 119.99851 * 115.06480 * 4 2 1 15 15 O 1.21592 * 120.00200 * 185.11406 * 14 4 2 16 16 C 1.47463 * 120.00007 * 5.11774 * 14 4 2 17 17 C 1.35619 * 118.97280 * 85.02485 * 16 14 4 18 18 C 1.46290 * 119.40055 * 179.97438 * 17 16 14 19 19 C 1.39615 * 121.78515 * 180.02562 * 18 17 16 20 20 C 1.37780 * 119.54039 * 179.97438 * 19 18 17 21 21 C 1.38825 * 120.70005 * 0.02562 * 20 19 18 22 22 C 1.37889 * 120.73677 * 0.02562 * 21 20 19 23 23 C 1.39290 * 119.59684 * 359.97438 * 22 21 20 24 24 C 1.46986 * 121.77238 * 180.02562 * 23 22 21 25 25 O 1.21742 * 120.28448 * 359.96299 * 24 23 22 26 26 N 1.34738 * 119.43333 * 179.97438 * 24 23 22 27 27 C 1.46501 * 118.95588 * 180.02562 * 26 24 23 28 28 H 1.08995 * 109.47257 * 300.00107 * 1 2 3 29 29 H 1.09007 * 109.46678 * 60.00254 * 1 2 3 30 30 H 1.09003 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47257 * 239.99893 * 2 1 3 32 32 H 1.09001 * 109.46798 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47269 * 299.99409 * 3 2 1 34 34 H 1.08998 * 109.47020 * 60.00345 * 3 2 1 35 35 H 1.09004 * 109.46632 * 30.00248 * 5 4 2 36 36 H 1.08992 * 109.47563 * 150.00281 * 5 4 2 37 37 H 0.97000 * 119.99807 * 180.02562 * 9 8 6 38 38 H 1.07989 * 120.29964 * 0.02562 * 17 16 14 39 39 H 1.07996 * 120.22636 * 0.02562 * 19 18 17 40 40 H 1.07996 * 119.64918 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.63251 * 180.27352 * 21 20 19 42 42 H 1.07993 * 120.20134 * 180.02562 * 22 21 20 43 43 H 1.09009 * 109.47121 * 274.91026 * 27 26 24 44 44 H 1.08997 * 109.47109 * 34.90894 * 27 26 24 45 45 H 1.08999 * 109.47664 * 154.91420 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7557 -0.1302 2.5241 6 6 2.8791 0.7978 2.9088 7 1 3.7061 0.9541 2.2320 8 6 2.8515 1.4464 4.1251 9 7 3.8321 2.2559 4.4611 10 14 1.4214 1.1755 5.2960 11 1 1.7261 0.0320 6.1932 12 1 1.2086 2.3996 6.1091 13 1 0.1927 0.8792 4.5164 14 6 2.7090 -1.8415 1.0752 15 8 3.0337 -2.4631 2.0685 16 6 3.0711 -2.3469 -0.2620 17 6 4.2010 -1.8867 -0.8544 18 6 4.5694 -2.3822 -2.1806 19 6 5.7214 -1.9430 -2.8359 20 6 6.0244 -2.4410 -4.0843 21 6 5.1968 -3.3729 -4.6957 22 6 4.0537 -3.8198 -4.0673 23 6 3.7266 -3.3306 -2.8048 24 6 2.5204 -3.7743 -2.0915 25 8 1.7723 -4.5899 -2.5987 26 7 2.2497 -3.2704 -0.8715 27 6 1.0450 -3.7204 -0.1697 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.8171 0.4238 2.5055 36 1 1.6863 -0.9382 3.2523 37 1 3.8129 2.7119 5.3170 38 1 4.8235 -1.1618 -0.3513 39 1 6.3707 -1.2185 -2.3671 40 1 6.9152 -2.1027 -4.5926 41 1 5.4532 -3.7551 -5.6727 42 1 3.4163 -4.5452 -4.5507 43 1 0.1914 -3.1258 -0.4954 44 1 0.8636 -4.7710 -0.3962 45 1 1.1836 -3.5989 0.9046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586763945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:49 Heat of formation + Delta-G solvation = -39.019747 kcal Electronic energy + Delta-G solvation = -28834.753472 eV Core-core repulsion = 25009.801156 eV Total energy + Delta-G solvation = -3824.952316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.59782 -40.92720 -39.40950 -37.97897 -37.63876 -34.85813 -34.13619 -32.74666 -32.33002 -31.34852 -29.69457 -28.48294 -28.00801 -25.97362 -24.52174 -24.17462 -22.98239 -22.79013 -20.68025 -19.55016 -19.09887 -18.93442 -18.45163 -17.73396 -17.08476 -16.89865 -16.47553 -16.23915 -16.14000 -15.58500 -15.20270 -15.11376 -14.97058 -14.64258 -14.54294 -14.44799 -14.06721 -13.90844 -13.77677 -13.64111 -13.45870 -13.36500 -12.99895 -12.77488 -12.67833 -12.58674 -12.41497 -12.29177 -12.16776 -11.95567 -11.80082 -11.61690 -11.51294 -10.93986 -10.78247 -10.58367 -10.06811 -9.63236 -8.88214 -8.29051 -6.32289 -0.46099 -0.18431 0.93749 0.99424 1.34550 1.38371 1.44799 1.61462 1.72334 2.06298 2.33102 2.89443 3.01469 3.09998 3.19634 3.70143 3.77093 3.84277 3.89044 4.11707 4.15285 4.21793 4.29577 4.30516 4.33167 4.51290 4.54966 4.60503 4.67760 4.71996 4.80145 4.83852 4.85986 4.96476 4.98612 5.03670 5.10286 5.30243 5.31559 5.41613 5.44072 5.45903 5.50323 5.55789 5.87136 5.89173 6.24173 6.40112 6.63612 6.68937 6.95924 7.30468 8.86791 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.003883 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.179033 B = 7208.715203 C = 7810.328522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 C -0.146 4.146 4 N -0.568 5.568 5 C 0.223 3.777 6 C -0.522 4.522 7 H 0.042 0.958 8 C 0.018 3.982 9 N -0.941 5.941 10 Si 0.933 3.067 11 H -0.279 1.279 12 H -0.279 1.279 13 H -0.238 1.238 14 C 0.553 3.447 15 O -0.568 6.568 16 C 0.103 3.897 17 C -0.147 4.147 18 C -0.012 4.012 19 C -0.119 4.119 20 C -0.075 4.075 21 C -0.122 4.122 22 C -0.063 4.063 23 C -0.166 4.166 24 C 0.544 3.456 25 O -0.553 6.553 26 N -0.509 5.509 27 C 0.060 3.940 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.266 0.734 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.139 0.861 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 -6.817 -19.785 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 C -0.204 4.204 4 N -0.298 5.298 5 C 0.102 3.898 6 C -0.560 4.560 7 H 0.060 0.940 8 C -0.180 4.180 9 N -0.581 5.581 10 Si 0.756 3.244 11 H -0.205 1.205 12 H -0.205 1.205 13 H -0.161 1.161 14 C 0.338 3.662 15 O -0.447 6.447 16 C 0.000 4.000 17 C -0.171 4.171 18 C -0.014 4.014 19 C -0.137 4.137 20 C -0.093 4.093 21 C -0.139 4.139 22 C -0.081 4.081 23 C -0.169 4.169 24 C 0.340 3.660 25 O -0.434 6.434 26 N -0.227 5.227 27 C -0.081 4.081 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.182 0.818 42 H 0.157 0.843 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.306 -7.491 -19.384 20.909 hybrid contribution -0.194 0.145 1.527 1.547 sum -2.500 -7.346 -17.857 19.470 Atomic orbital electron populations 1.22176 0.92954 1.02677 1.03791 1.21405 0.95924 0.94210 0.86102 1.22012 1.00731 0.94893 1.02771 1.48133 1.51140 1.21479 1.09036 1.19443 0.96731 0.93324 0.80303 1.21427 1.06655 1.25111 1.02851 0.93998 1.25661 0.98576 0.94500 0.99308 1.70022 1.34106 1.30694 1.23297 0.85937 0.81000 0.77789 0.79634 1.20489 1.20476 1.16066 1.18176 0.78644 0.81788 0.87552 1.90815 1.55085 1.59304 1.39491 1.19653 0.94103 0.93613 0.92631 1.21782 0.96356 1.03543 0.95441 1.19013 0.95337 0.94662 0.92378 1.21503 0.95321 1.00892 0.95995 1.21767 0.99679 0.94134 0.93671 1.21620 0.93389 0.97399 1.01537 1.21233 0.97330 0.97797 0.91780 1.19965 0.96064 1.02755 0.98100 1.18477 0.86491 0.81051 0.79972 1.90805 1.51367 1.34654 1.66621 1.45059 1.23364 1.37307 1.16940 1.22231 0.85733 1.03021 0.97104 0.92255 0.88716 0.92210 0.89264 0.94125 0.89401 0.92673 0.92607 0.95932 0.92445 0.83067 0.83014 0.81516 0.81769 0.84338 0.88973 0.88600 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.25 71.98 0.67 -3.12 16 2 C 0.13 3.76 3.16 44.99 0.14 3.90 16 3 C -0.15 -4.54 8.36 71.98 0.60 -3.93 16 4 N -0.57 -21.84 2.38 -805.97 -1.92 -23.76 16 5 C 0.22 10.11 3.57 85.63 0.31 10.41 16 6 C -0.52 -28.34 8.40 25.60 0.21 -28.12 16 7 H 0.04 2.53 7.78 -2.91 -0.02 2.50 16 8 C 0.02 1.00 5.47 84.65 0.46 1.47 16 9 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 10 Si 0.93 42.39 27.47 68.60 1.88 44.28 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 14 C 0.55 22.16 5.18 86.67 0.45 22.61 16 15 O -0.57 -27.65 16.31 -4.01 -0.07 -27.72 16 16 C 0.10 3.43 4.35 40.03 0.17 3.60 16 17 C -0.15 -4.37 9.46 23.76 0.22 -4.15 16 18 C -0.01 -0.31 5.89 -20.07 -0.12 -0.43 16 19 C -0.12 -2.18 9.86 22.49 0.22 -1.96 16 20 C -0.07 -0.98 10.01 22.30 0.22 -0.75 16 21 C -0.12 -1.69 10.01 22.33 0.22 -1.46 16 22 C -0.06 -1.29 9.65 22.44 0.22 -1.07 16 23 C -0.17 -4.39 5.90 -19.95 -0.12 -4.51 16 24 C 0.54 16.81 7.62 86.54 0.66 17.47 16 25 O -0.55 -18.81 16.11 -4.48 -0.07 -18.89 16 26 N -0.51 -15.71 3.04 -654.68 -1.99 -17.70 16 27 C 0.06 1.65 9.91 127.77 1.27 2.92 16 28 H 0.06 1.53 6.86 -2.39 -0.02 1.52 16 29 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.06 1.35 7.49 -2.39 -0.02 1.33 16 31 H 0.09 2.47 6.07 -2.39 -0.01 2.46 16 32 H 0.04 1.41 7.99 -2.39 -0.02 1.39 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 2.00 6.95 -2.39 -0.02 1.98 16 35 H 0.06 2.33 5.75 -2.38 -0.01 2.31 16 36 H 0.02 1.11 6.78 -2.39 -0.02 1.09 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.15 4.50 8.05 -2.92 -0.02 4.48 16 39 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.14 2.72 7.77 -2.91 -0.02 2.70 16 43 H 0.09 2.14 7.49 -2.38 -0.02 2.12 16 44 H 0.10 2.49 7.51 -2.39 -0.02 2.48 16 45 H 0.07 2.26 6.34 -2.39 -0.02 2.24 16 Total: -1.00 -74.16 367.66 4.90 -69.26 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.95 Total: 18.18 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.82 Total: 12.88 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.61 Total: -97.99 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.14 Total: -46.60 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Total: -74.16 4.90 -69.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586763945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.241 kcal (2) G-P(sol) polarization free energy of solvation -74.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds