Wall clock time and date at job start Tue Mar 31 2020 16:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50711 * 120.00104 * 2 1 4 4 N 1.46496 * 109.47310 * 126.20983 * 3 2 1 5 5 C 1.46495 * 120.00269 * 277.41502 * 4 3 2 6 6 C 1.50697 * 109.46868 * 270.00150 * 5 4 3 7 7 H 1.08003 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00143 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00173 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99905 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47626 * 89.99522 * 10 8 6 12 12 H 1.48501 * 109.47054 * 209.99718 * 10 8 6 13 13 H 1.48504 * 109.46897 * 329.99593 * 10 8 6 14 14 C 1.34778 * 119.99762 * 97.41210 * 4 3 2 15 15 O 1.21588 * 119.99854 * 185.41695 * 14 4 3 16 16 C 1.47593 * 120.00233 * 5.69619 * 14 4 3 17 17 C 1.39809 * 120.41758 * 311.81518 * 16 14 4 18 18 C 1.36865 * 119.39984 * 179.45502 * 17 16 14 19 19 C 1.40866 * 121.64023 * 0.49642 * 18 17 16 20 20 C 1.38118 * 118.98434 * 0.35317 * 19 18 17 21 21 C 1.39046 * 120.42495 * 132.09423 * 16 14 4 22 22 C 1.49404 * 125.12375 * 178.40672 * 20 19 18 23 23 C 1.49707 * 115.79372 * 324.47510 * 22 20 19 24 24 C 1.50994 * 113.46502 * 77.63285 * 23 22 20 25 25 C 1.48711 * 111.85276 * 286.83883 * 24 23 22 26 26 O 1.21284 * 116.38042 * 215.68115 * 25 24 23 27 27 N 1.30212 * 127.23670 * 35.66697 * 25 24 23 28 28 H 1.07996 * 119.99803 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99685 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00421 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46747 * 6.20523 * 3 2 1 32 32 H 1.08997 * 109.46591 * 246.21042 * 3 2 1 33 33 H 1.09003 * 109.47326 * 29.99878 * 5 4 3 34 34 H 1.08993 * 109.47615 * 150.00111 * 5 4 3 35 35 H 0.96995 * 119.99927 * 179.97438 * 9 8 6 36 36 H 1.07990 * 120.29515 * 359.70934 * 17 16 14 37 37 H 1.08001 * 119.17992 * 180.23695 * 18 17 16 38 38 H 1.08000 * 119.31054 * 0.02562 * 21 16 14 39 39 H 1.08996 * 108.21057 * 86.13513 * 22 20 19 40 40 H 1.08999 * 108.21656 * 202.84251 * 22 20 19 41 41 H 1.09000 * 108.68606 * 316.60113 * 23 22 20 42 42 H 1.08996 * 108.57795 * 198.58470 * 23 22 20 43 43 H 1.09002 * 109.00500 * 166.23143 * 24 23 22 44 44 H 1.09000 * 108.94327 * 47.41132 * 24 23 22 45 45 H 0.97001 * 111.79516 * 169.33455 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 3.0144 1.3201 1.1144 5 6 2.5615 1.6854 2.4589 6 6 2.7019 3.1737 2.6492 7 1 3.0902 3.7862 1.8488 8 6 2.3348 3.7535 3.8450 9 7 2.4579 5.0523 4.0113 10 14 1.6640 2.6941 5.2296 11 1 2.7853 2.2287 6.0848 12 1 0.7153 3.4914 6.0479 13 1 0.9580 1.5199 4.6568 14 6 4.3058 0.9978 0.9027 15 8 5.0733 0.9142 1.8420 16 6 4.7898 0.7524 -0.4698 17 6 4.0810 -0.0916 -1.3300 18 6 4.5427 -0.2956 -2.6022 19 6 5.7232 0.3164 -3.0670 20 6 6.4334 1.1363 -2.2119 21 6 5.9595 1.3531 -0.9220 22 6 7.7158 1.8248 -2.5487 23 6 8.6491 1.0647 -3.4388 24 6 8.2467 1.0904 -4.8939 25 6 7.0619 0.2308 -5.1559 26 8 7.0436 -0.3522 -6.2193 27 7 6.0421 0.0340 -4.3706 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3605 2.1306 0.1111 32 1 2.6042 1.4125 -0.9403 33 1 1.5163 1.4006 2.5801 34 1 3.1680 1.1655 3.2004 35 1 2.1993 5.4602 4.8525 36 1 3.1753 -0.5749 -0.9950 37 1 3.9903 -0.9453 -3.2650 38 1 6.5116 2.0017 -0.2579 39 1 7.4771 2.7713 -3.0337 40 1 8.2379 2.0470 -1.6181 41 1 8.6837 0.0278 -3.1044 42 1 9.6462 1.4947 -3.3446 43 1 9.0818 0.7380 -5.4994 44 1 8.0109 2.1160 -5.1778 45 1 5.3225 -0.4319 -4.8245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590409829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:04 Heat of formation + Delta-G solvation = -7.114971 kcal Electronic energy + Delta-G solvation = -27737.690332 eV Core-core repulsion = 23914.121511 eV Total energy + Delta-G solvation = -3823.568821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50099 -39.93864 -38.44336 -36.00641 -35.73236 -35.32171 -33.25038 -32.21226 -31.67694 -30.34404 -28.39209 -27.32475 -25.84236 -24.76161 -23.61621 -22.25229 -21.38637 -20.33610 -20.09110 -18.56476 -18.19891 -17.41248 -16.95120 -16.87527 -16.00767 -15.81618 -15.36168 -15.18792 -14.67615 -14.54650 -14.25365 -14.12727 -14.04472 -13.85417 -13.57407 -13.50691 -12.91161 -12.59395 -12.40977 -12.29651 -11.97681 -11.75711 -11.65115 -11.57732 -11.47715 -11.28402 -11.11721 -10.88313 -10.85038 -10.55362 -10.31378 -10.17793 -9.61880 -9.34703 -9.21970 -8.94701 -8.62341 -8.14504 -7.81877 -6.12442 -4.11686 0.77740 1.16847 2.25128 2.32469 2.76556 3.16478 3.27146 3.33204 3.35346 3.59544 3.91596 4.11759 4.36715 4.38477 4.46188 4.49080 4.58998 4.76666 4.89813 5.04704 5.10364 5.16371 5.20217 5.27007 5.29316 5.32142 5.46304 5.55655 5.61660 5.70442 5.76944 5.83852 5.86954 5.89747 6.06873 6.10638 6.34560 6.37841 6.56906 6.64952 6.69069 6.77713 6.91375 7.20544 7.27199 7.56566 7.64297 8.13114 8.41867 8.81557 8.91312 9.47642 11.00720 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.003118 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.593952 B = 8976.704481 C = 9992.090670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 C 0.128 3.872 4 N -0.580 5.580 5 C 0.216 3.784 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.553 3.447 15 O -0.534 6.534 16 C -0.132 4.132 17 C -0.069 4.069 18 C -0.169 4.169 19 C 0.181 3.819 20 C -0.117 4.117 21 C -0.039 4.039 22 C -0.082 4.082 23 C -0.120 4.120 24 C -0.137 4.137 25 C 0.527 3.473 26 O -0.552 6.552 27 N -0.642 5.642 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 -9.726 -16.839 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.195 4.195 3 C 0.004 3.996 4 N -0.310 5.310 5 C 0.096 3.904 6 C -0.570 4.570 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.340 3.660 15 O -0.411 6.411 16 C -0.136 4.136 17 C -0.088 4.088 18 C -0.189 4.189 19 C 0.084 3.916 20 C -0.120 4.120 21 C -0.058 4.058 22 C -0.119 4.119 23 C -0.158 4.158 24 C -0.176 4.176 25 C 0.316 3.684 26 O -0.431 6.431 27 N -0.279 5.279 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.662 -9.732 -16.648 20.097 hybrid contribution -0.819 -0.515 0.737 1.216 sum 4.842 -10.247 -15.911 19.535 Atomic orbital electron populations 1.23873 0.95788 1.02006 0.99686 1.23454 0.96429 0.98876 1.00733 1.20801 0.92827 0.95376 0.90564 1.47810 1.07059 1.65386 1.10724 1.19689 0.94959 0.96897 0.78840 1.21317 1.43770 0.90552 1.01320 0.90668 1.24837 0.95088 0.94865 0.98074 1.69891 1.47982 1.09833 1.25754 0.86872 0.79456 0.80755 0.82783 1.19849 1.21044 1.18980 1.18093 0.82506 0.77690 0.87703 1.90774 1.54882 1.51869 1.43607 1.19975 0.97079 1.01246 0.95319 1.21396 0.98950 0.96203 0.92220 1.21050 0.96743 1.03533 0.97572 1.17100 0.94835 0.96261 0.83364 1.18974 0.98378 1.00642 0.94016 1.21261 0.93922 0.96761 0.93848 1.19646 0.92215 0.98745 1.01320 1.20485 1.00136 1.02214 0.92936 1.21136 0.96203 1.01167 0.99107 1.19219 0.83785 0.81910 0.83475 1.90834 1.79495 1.47764 1.24960 1.42123 1.19191 1.56122 1.10479 0.88582 0.88052 0.87405 0.89331 0.89534 0.94982 0.94334 0.92514 0.83902 0.85219 0.84604 0.90546 0.89602 0.91421 0.89719 0.87524 0.87970 0.76852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 14.32 29.01 0.42 -1.59 16 2 C -0.18 -2.22 8.55 -36.02 -0.31 -2.53 16 3 C 0.13 1.95 5.35 -5.19 -0.03 1.93 16 4 N -0.58 -11.58 2.45 -177.65 -0.43 -12.02 16 5 C 0.22 5.18 4.28 -5.20 -0.02 5.15 16 6 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 7 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 10 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 14 C 0.55 11.10 7.25 -12.44 -0.09 11.01 16 15 O -0.53 -12.92 16.57 5.29 0.09 -12.83 16 16 C -0.13 -2.01 4.96 -105.19 -0.52 -2.53 16 17 C -0.07 -0.82 7.46 -39.49 -0.29 -1.11 16 18 C -0.17 -1.65 9.49 -39.09 -0.37 -2.02 16 19 C 0.18 1.85 6.64 -84.54 -0.56 1.29 16 20 C -0.12 -1.29 5.69 -104.96 -0.60 -1.88 16 21 C -0.04 -0.53 9.07 -38.95 -0.35 -0.88 16 22 C -0.08 -0.70 5.22 -30.13 -0.16 -0.85 16 23 C -0.12 -0.84 5.27 -29.37 -0.15 -1.00 16 24 C -0.14 -1.00 5.64 -29.84 -0.17 -1.17 16 25 C 0.53 5.37 7.51 -13.91 -0.10 5.27 16 26 O -0.55 -7.44 17.42 5.55 0.10 -7.35 16 27 N -0.64 -6.02 4.75 -11.83 -0.06 -6.07 16 28 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.10 1.15 7.85 -52.49 -0.41 0.74 16 30 H 0.11 1.24 6.56 -52.49 -0.34 0.90 16 31 H 0.09 1.43 7.78 -51.93 -0.40 1.03 16 32 H 0.09 1.16 5.23 -51.93 -0.27 0.89 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 0.99 6.78 -51.93 -0.35 0.64 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.14 1.54 4.17 -52.49 -0.22 1.33 16 37 H 0.13 0.91 7.69 -52.49 -0.40 0.50 16 38 H 0.14 1.93 7.76 -52.49 -0.41 1.52 16 39 H 0.08 0.59 7.94 -51.93 -0.41 0.18 16 40 H 0.09 0.70 7.63 -51.93 -0.40 0.30 16 41 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.11 0.70 8.08 -51.93 -0.42 0.28 16 44 H 0.10 0.62 7.98 -51.93 -0.41 0.21 16 45 H 0.40 3.29 7.44 -40.82 -0.30 2.98 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -35.11 366.12 -8.43 -43.53 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.98 Total: 3.17 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.76 Total: -4.15 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.28 Total: -44.46 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.18 Total: -20.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.11 -8.43 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.415 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds