Wall clock time and date at job start Tue Mar 31 2020 16:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50711 * 120.00104 * 2 1 4 4 N 1.46496 * 109.47310 * 126.20983 * 3 2 1 5 5 C 1.46495 * 120.00269 * 277.41502 * 4 3 2 6 6 C 1.50697 * 109.46868 * 270.00150 * 5 4 3 7 7 H 1.08003 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00143 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00173 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99905 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47626 * 89.99522 * 10 8 6 12 12 H 1.48501 * 109.47054 * 209.99718 * 10 8 6 13 13 H 1.48504 * 109.46897 * 329.99593 * 10 8 6 14 14 C 1.34778 * 119.99762 * 97.41210 * 4 3 2 15 15 O 1.21588 * 119.99854 * 185.41695 * 14 4 3 16 16 C 1.47593 * 120.00233 * 5.69619 * 14 4 3 17 17 C 1.39809 * 120.41758 * 311.81518 * 16 14 4 18 18 C 1.36865 * 119.39984 * 179.45502 * 17 16 14 19 19 C 1.40866 * 121.64023 * 0.49642 * 18 17 16 20 20 C 1.38118 * 118.98434 * 0.35317 * 19 18 17 21 21 C 1.39046 * 120.42495 * 132.09423 * 16 14 4 22 22 C 1.49404 * 125.12375 * 178.40672 * 20 19 18 23 23 C 1.49707 * 115.79372 * 324.47510 * 22 20 19 24 24 C 1.50994 * 113.46502 * 77.63285 * 23 22 20 25 25 C 1.48711 * 111.85276 * 286.83883 * 24 23 22 26 26 O 1.21284 * 116.38042 * 215.68115 * 25 24 23 27 27 N 1.30212 * 127.23670 * 35.66697 * 25 24 23 28 28 H 1.07996 * 119.99803 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99685 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00421 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46747 * 6.20523 * 3 2 1 32 32 H 1.08997 * 109.46591 * 246.21042 * 3 2 1 33 33 H 1.09003 * 109.47326 * 29.99878 * 5 4 3 34 34 H 1.08993 * 109.47615 * 150.00111 * 5 4 3 35 35 H 0.96995 * 119.99927 * 179.97438 * 9 8 6 36 36 H 1.07990 * 120.29515 * 359.70934 * 17 16 14 37 37 H 1.08001 * 119.17992 * 180.23695 * 18 17 16 38 38 H 1.08000 * 119.31054 * 0.02562 * 21 16 14 39 39 H 1.08996 * 108.21057 * 86.13513 * 22 20 19 40 40 H 1.08999 * 108.21656 * 202.84251 * 22 20 19 41 41 H 1.09000 * 108.68606 * 316.60113 * 23 22 20 42 42 H 1.08996 * 108.57795 * 198.58470 * 23 22 20 43 43 H 1.09002 * 109.00500 * 166.23143 * 24 23 22 44 44 H 1.09000 * 108.94327 * 47.41132 * 24 23 22 45 45 H 0.97001 * 111.79516 * 169.33455 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 3.0144 1.3201 1.1144 5 6 2.5615 1.6854 2.4589 6 6 2.7019 3.1737 2.6492 7 1 3.0902 3.7862 1.8488 8 6 2.3348 3.7535 3.8450 9 7 2.4579 5.0523 4.0113 10 14 1.6640 2.6941 5.2296 11 1 2.7853 2.2287 6.0848 12 1 0.7153 3.4914 6.0479 13 1 0.9580 1.5199 4.6568 14 6 4.3058 0.9978 0.9027 15 8 5.0733 0.9142 1.8420 16 6 4.7898 0.7524 -0.4698 17 6 4.0810 -0.0916 -1.3300 18 6 4.5427 -0.2956 -2.6022 19 6 5.7232 0.3164 -3.0670 20 6 6.4334 1.1363 -2.2119 21 6 5.9595 1.3531 -0.9220 22 6 7.7158 1.8248 -2.5487 23 6 8.6491 1.0647 -3.4388 24 6 8.2467 1.0904 -4.8939 25 6 7.0619 0.2308 -5.1559 26 8 7.0436 -0.3522 -6.2193 27 7 6.0421 0.0340 -4.3706 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3605 2.1306 0.1111 32 1 2.6042 1.4125 -0.9403 33 1 1.5163 1.4006 2.5801 34 1 3.1680 1.1655 3.2004 35 1 2.1993 5.4602 4.8525 36 1 3.1753 -0.5749 -0.9950 37 1 3.9903 -0.9453 -3.2650 38 1 6.5116 2.0017 -0.2579 39 1 7.4771 2.7713 -3.0337 40 1 8.2379 2.0470 -1.6181 41 1 8.6837 0.0278 -3.1044 42 1 9.6462 1.4947 -3.3446 43 1 9.0818 0.7380 -5.4994 44 1 8.0109 2.1160 -5.1778 45 1 5.3225 -0.4319 -4.8245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590409829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:02 Heat of formation + Delta-G solvation = -29.957453 kcal Electronic energy + Delta-G solvation = -27738.680857 eV Core-core repulsion = 23914.121511 eV Total energy + Delta-G solvation = -3824.559346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.35399 -41.20447 -39.59574 -37.40655 -36.55359 -36.24378 -35.04114 -33.79709 -32.57298 -31.46110 -30.03921 -28.17568 -27.09014 -25.90033 -24.85918 -23.63568 -22.28548 -21.33014 -21.15079 -19.78852 -19.12923 -19.00090 -18.22246 -18.18625 -17.44315 -16.74305 -16.40492 -16.20232 -16.16980 -15.68946 -15.49454 -15.23815 -14.92496 -14.81518 -14.64092 -14.48257 -14.43248 -14.19333 -13.67977 -13.45701 -13.25242 -13.06039 -12.94858 -12.79192 -12.50257 -12.31240 -12.23569 -12.11999 -11.98255 -11.82995 -11.79518 -11.70502 -11.11647 -10.84507 -10.80916 -10.34752 -9.86442 -9.51927 -9.05401 -8.34834 -6.40195 -0.21698 0.25394 1.28336 1.33550 1.36458 1.40931 1.45047 1.79878 1.98055 2.30296 2.33412 2.72823 2.99544 3.41164 3.53625 3.58362 3.72688 3.87690 3.93600 4.06321 4.11374 4.19314 4.22600 4.31235 4.41927 4.57696 4.71128 4.73712 4.76296 4.83101 4.87009 4.90650 4.94584 5.05074 5.08134 5.10699 5.21159 5.23693 5.37884 5.43515 5.49396 5.56528 5.66174 5.72013 5.90621 6.22118 6.38477 6.59005 6.61342 6.86213 7.17332 7.31422 8.81887 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.003118 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.593952 B = 8976.704481 C = 9992.090670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.190 4.190 3 C 0.126 3.874 4 N -0.586 5.586 5 C 0.227 3.773 6 C -0.538 4.538 7 H 0.030 0.970 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.944 3.056 11 H -0.276 1.276 12 H -0.274 1.274 13 H -0.238 1.238 14 C 0.547 3.453 15 O -0.591 6.591 16 C -0.156 4.156 17 C -0.065 4.065 18 C -0.153 4.153 19 C 0.190 3.810 20 C -0.113 4.113 21 C -0.053 4.053 22 C -0.086 4.086 23 C -0.113 4.113 24 C -0.135 4.135 25 C 0.526 3.474 26 O -0.585 6.585 27 N -0.635 5.635 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.020 0.980 35 H 0.269 0.731 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -11.923 -18.688 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.209 4.209 3 C 0.004 3.996 4 N -0.315 5.315 5 C 0.105 3.895 6 C -0.576 4.576 7 H 0.049 0.951 8 C -0.184 4.184 9 N -0.583 5.583 10 Si 0.767 3.233 11 H -0.202 1.202 12 H -0.199 1.199 13 H -0.161 1.161 14 C 0.336 3.664 15 O -0.472 6.472 16 C -0.160 4.160 17 C -0.084 4.084 18 C -0.173 4.173 19 C 0.092 3.908 20 C -0.116 4.116 21 C -0.072 4.072 22 C -0.123 4.123 23 C -0.150 4.150 24 C -0.174 4.174 25 C 0.317 3.683 26 O -0.467 6.467 27 N -0.272 5.272 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.716 -11.938 -18.550 22.558 hybrid contribution -0.500 0.246 1.177 1.303 sum 4.216 -11.693 -17.373 21.361 Atomic orbital electron populations 1.24111 0.95337 1.03182 0.97005 1.23289 0.96772 0.97731 1.03066 1.21008 0.92093 0.96840 0.89671 1.47873 1.08191 1.64910 1.10499 1.19312 0.95444 0.93694 0.81042 1.21533 1.43223 0.92552 1.00339 0.95137 1.25800 0.95389 0.96198 1.00981 1.70039 1.49470 1.11940 1.26827 0.85765 0.78913 0.79685 0.78946 1.20151 1.19895 1.16146 1.18880 0.81901 0.76304 0.89277 1.90717 1.56171 1.54480 1.45874 1.19668 0.98737 1.04221 0.93398 1.21456 0.99085 0.95449 0.92376 1.21377 0.96206 1.02754 0.96983 1.17169 0.94687 0.95400 0.83498 1.19135 0.99212 1.00495 0.92787 1.21210 0.93745 0.97266 0.95022 1.19738 0.91400 0.99216 1.01939 1.20447 1.00823 1.01525 0.92243 1.21202 0.95328 1.01524 0.99363 1.19729 0.84259 0.81522 0.82773 1.90829 1.80213 1.49250 1.26362 1.42053 1.19436 1.55721 1.09978 0.85940 0.88307 0.85861 0.90803 0.87754 0.93227 0.96187 0.92202 0.82583 0.81424 0.86449 0.89390 0.89662 0.92378 0.87320 0.86442 0.86233 0.76026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 14.32 67.78 0.97 -2.16 16 2 C -0.19 -4.37 8.55 25.65 0.22 -4.15 16 3 C 0.13 3.80 5.35 85.64 0.46 4.26 16 4 N -0.59 -24.05 2.45 -834.22 -2.04 -26.09 16 5 C 0.23 11.11 4.28 85.63 0.37 11.47 16 6 C -0.54 -31.57 9.94 25.60 0.25 -31.32 16 7 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 8 C 0.01 0.86 5.47 84.66 0.46 1.33 16 9 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 10 Si 0.94 44.19 27.47 68.60 1.88 46.08 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 14 C 0.55 22.96 7.25 86.71 0.63 23.59 16 15 O -0.59 -30.43 16.57 -3.99 -0.07 -30.50 16 16 C -0.16 -4.84 4.96 -20.23 -0.10 -4.94 16 17 C -0.07 -1.43 7.46 22.33 0.17 -1.26 16 18 C -0.15 -2.52 9.49 22.59 0.21 -2.31 16 19 C 0.19 3.43 6.64 38.93 0.26 3.69 16 20 C -0.11 -2.37 5.69 -20.08 -0.11 -2.48 16 21 C -0.05 -1.49 9.07 22.68 0.21 -1.29 16 22 C -0.09 -1.33 5.22 28.39 0.15 -1.19 16 23 C -0.11 -1.31 5.27 28.89 0.15 -1.16 16 24 C -0.14 -1.61 5.64 28.58 0.16 -1.45 16 25 C 0.53 9.45 7.51 87.74 0.66 10.11 16 26 O -0.59 -14.65 17.42 -3.04 -0.05 -14.70 16 27 N -0.64 -10.15 4.75 -312.19 -1.48 -11.63 16 28 H 0.12 1.82 8.06 -2.91 -0.02 1.79 16 29 H 0.10 2.01 7.85 -2.91 -0.02 1.98 16 30 H 0.12 2.48 6.56 -2.91 -0.02 2.46 16 31 H 0.07 2.42 7.78 -2.39 -0.02 2.40 16 32 H 0.10 2.73 5.23 -2.39 -0.01 2.71 16 33 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 34 H 0.02 1.06 6.78 -2.39 -0.02 1.04 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.16 2.99 4.17 -2.92 -0.01 2.98 16 37 H 0.17 1.52 7.69 -2.91 -0.02 1.50 16 38 H 0.12 3.65 7.76 -2.91 -0.02 3.63 16 39 H 0.09 1.19 7.94 -2.39 -0.02 1.17 16 40 H 0.08 1.35 7.63 -2.39 -0.02 1.33 16 41 H 0.06 0.81 8.06 -2.39 -0.02 0.79 16 42 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.12 1.21 8.08 -2.39 -0.02 1.19 16 44 H 0.12 1.07 7.98 -2.39 -0.02 1.05 16 45 H 0.40 5.40 7.44 -92.71 -0.69 4.71 16 Total: -1.00 -81.54 366.12 3.93 -77.60 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.28 Total: 17.38 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.11 Total: 0.74 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -3.22 Total: -96.60 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.12 Total: -45.20 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Total: -81.54 3.93 -77.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.647 kcal (2) G-P(sol) polarization free energy of solvation -81.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds