Wall clock time and date at job start Tue Mar 31 2020 16:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 120.00230 * 2 1 4 4 N 1.46501 * 109.47072 * 128.27112 * 3 2 1 5 5 C 1.46507 * 119.99656 * 82.00189 * 4 3 2 6 6 C 1.50698 * 109.46769 * 90.00158 * 5 4 3 7 7 H 1.07989 * 120.00209 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99608 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00228 * 179.97438 * 8 6 5 10 10 Si 1.86809 * 120.00104 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46753 * 269.99807 * 10 8 6 12 12 H 1.48497 * 109.46983 * 29.99608 * 10 8 6 13 13 H 1.48500 * 109.46994 * 149.99824 * 10 8 6 14 14 C 1.34779 * 120.00124 * 262.00543 * 4 3 2 15 15 O 1.21287 * 119.99592 * 183.62769 * 14 4 3 16 16 C 1.50694 * 119.99978 * 3.62046 * 14 4 3 17 17 C 1.50696 * 110.85972 * 301.41482 * 16 14 4 18 18 C 1.38236 * 119.99551 * 306.66868 * 17 16 14 19 19 C 1.38238 * 119.99464 * 179.76813 * 18 17 16 20 20 C 1.38240 * 120.00367 * 0.48706 * 19 18 17 21 21 C 1.38233 * 119.99517 * 359.79175 * 20 19 18 22 22 C 1.38231 * 120.00054 * 126.94708 * 17 16 14 23 23 C 1.54482 * 110.96832 * 177.62229 * 16 14 4 24 24 N 1.46768 * 105.47429 * 267.29958 * 23 16 14 25 25 C 1.34424 * 111.30063 * 342.98176 * 24 23 16 26 26 O 1.21281 * 124.94273 * 180.43471 * 25 24 23 27 27 C 1.51386 * 110.12448 * 0.40418 * 25 24 23 28 28 H 1.08003 * 119.99597 * 355.31237 * 1 2 3 29 29 H 1.07995 * 120.00262 * 175.30700 * 1 2 3 30 30 H 1.07994 * 120.00298 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46695 * 8.27689 * 3 2 1 32 32 H 1.08991 * 109.47291 * 248.27624 * 3 2 1 33 33 H 1.09000 * 109.46903 * 329.99764 * 5 4 3 34 34 H 1.08998 * 109.46716 * 210.00063 * 5 4 3 35 35 H 0.97000 * 120.00459 * 180.02562 * 9 8 6 36 36 H 1.08003 * 120.00520 * 0.02562 * 18 17 16 37 37 H 1.08006 * 119.99793 * 180.25698 * 19 18 17 38 38 H 1.07993 * 119.99702 * 179.76962 * 20 19 18 39 39 H 1.08002 * 119.99870 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00353 * 0.02562 * 22 17 16 41 41 H 1.08994 * 110.24778 * 26.29581 * 23 16 14 42 42 H 1.09001 * 110.24605 * 148.21436 * 23 16 14 43 43 H 0.97000 * 124.35369 * 162.95859 * 24 23 16 44 44 H 1.08994 * 110.49971 * 257.59996 * 27 25 24 45 45 H 1.08999 * 110.51960 * 134.91661 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0486 1.3002 1.0844 5 6 4.3437 0.6422 0.8945 6 6 5.3339 1.6330 0.3388 7 1 5.0289 2.6508 0.1459 8 6 6.6291 1.2399 0.0766 9 7 7.4932 2.1044 -0.4088 10 14 7.1565 -0.5210 0.4095 11 1 7.6682 -0.6300 1.7993 12 1 5.9925 -1.4270 0.2381 13 1 8.2279 -0.9055 -0.5441 14 6 2.7634 1.9010 2.2567 15 8 3.6026 1.9544 3.1307 16 6 1.4019 2.5066 2.4813 17 6 1.1064 3.5614 1.4464 18 6 1.9995 4.5960 1.2396 19 6 1.7307 5.5610 0.2869 20 6 0.5640 5.4969 -0.4518 21 6 -0.3318 4.4655 -0.2409 22 6 -0.0605 3.4976 0.7081 23 6 1.2825 3.0841 3.9091 24 7 0.7121 2.0035 4.7222 25 6 0.1519 1.0557 3.9509 26 8 -0.3974 0.0573 4.3661 27 6 0.3056 1.4161 2.4886 28 1 -0.5399 0.9322 0.0764 29 1 -0.5400 -0.9321 -0.0765 30 1 1.8500 -0.9352 -0.0004 31 1 1.3645 2.1283 0.1479 32 1 2.5746 1.4296 -0.9546 33 1 4.2305 -0.1883 0.1976 34 1 4.7041 0.2664 1.8521 35 1 8.4044 1.8278 -0.5937 36 1 2.9093 4.6482 1.8193 37 1 2.4305 6.3671 0.1224 38 1 0.3524 6.2529 -1.1934 39 1 -1.2435 4.4156 -0.8177 40 1 -0.7606 2.6920 0.8731 41 1 2.2664 3.3615 4.2873 42 1 0.6201 3.9498 3.9117 43 1 0.7364 1.9765 5.6915 44 1 -0.6294 1.8125 2.0929 45 1 0.6271 0.5481 1.9130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597684442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:05 Heat of formation + Delta-G solvation = 10.314795 kcal Electronic energy + Delta-G solvation = -29702.145703 eV Core-core repulsion = 25879.332693 eV Total energy + Delta-G solvation = -3822.813010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58864 -39.13694 -38.52184 -36.31632 -35.94237 -33.54089 -32.79876 -32.19352 -31.07408 -29.48887 -28.37751 -27.47869 -25.74482 -24.02365 -22.78687 -22.54214 -21.01947 -20.44389 -19.80958 -18.56394 -17.67088 -17.36623 -16.92922 -16.25098 -15.79322 -15.57302 -15.26271 -14.95448 -14.61777 -14.52559 -14.26372 -14.09297 -13.72771 -13.54994 -13.46485 -13.18366 -12.91960 -12.80336 -12.51600 -12.37777 -12.14454 -11.79875 -11.66359 -11.33398 -11.32010 -11.09037 -10.88457 -10.86717 -10.55297 -10.20413 -9.88200 -9.62379 -9.37093 -9.19468 -9.09181 -8.94353 -8.62173 -8.54346 -7.83864 -6.12288 -4.11000 1.21002 1.34355 2.24363 2.60327 3.04446 3.26537 3.32366 3.34870 3.38088 3.61014 3.69650 4.19560 4.35942 4.36553 4.49484 4.68375 4.84896 4.94066 4.96125 5.09044 5.15567 5.21032 5.27488 5.34318 5.40946 5.52520 5.54821 5.62875 5.64406 5.77300 5.88661 5.95819 5.99930 6.11294 6.37232 6.46557 6.51138 6.59914 6.64386 6.74618 6.75572 6.86877 6.90240 6.99408 7.21741 7.56029 8.10587 8.24788 8.41241 8.77033 8.91481 9.47962 11.00828 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010735 B = 0.005530 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.731406 B = 5061.928609 C = 5986.119053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.108 3.892 4 N -0.577 5.577 5 C 0.215 3.785 6 C -0.526 4.526 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.266 1.266 13 H -0.284 1.284 14 C 0.526 3.474 15 O -0.527 6.527 16 C -0.054 4.054 17 C -0.064 4.064 18 C -0.098 4.098 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.127 4.127 23 C 0.123 3.877 24 N -0.724 5.724 25 C 0.524 3.476 26 O -0.537 6.537 27 C -0.174 4.174 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.411 0.589 44 H 0.119 0.881 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.042 5.130 0.850 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.181 4.181 3 C -0.015 4.015 4 N -0.306 5.306 5 C 0.095 3.905 6 C -0.565 4.565 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.191 1.191 13 H -0.210 1.210 14 C 0.311 3.689 15 O -0.404 6.404 16 C -0.058 4.058 17 C -0.065 4.065 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.002 4.002 24 N -0.379 5.379 25 C 0.310 3.690 26 O -0.415 6.415 27 C -0.214 4.214 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.250 0.750 44 H 0.136 0.864 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.637 4.644 1.335 18.287 hybrid contribution 0.644 -0.854 0.329 1.119 sum -16.993 3.790 1.664 17.490 Atomic orbital electron populations 1.23917 0.95740 1.02057 1.01486 1.23557 0.96218 1.00026 0.98273 1.21275 0.91953 0.95590 0.92674 1.47754 1.16968 1.54090 1.11787 1.19722 0.80039 0.93428 0.97333 1.21266 0.94296 0.98198 1.42715 0.90571 1.24826 0.96276 0.97227 0.94492 1.69884 1.04675 1.34492 1.44385 0.86906 0.78907 0.85503 0.78725 1.19922 1.19086 1.21020 1.19603 0.87311 0.79150 0.82826 1.90690 1.48204 1.58145 1.43312 1.20612 0.95307 0.94702 0.95187 1.19118 0.95597 0.94946 0.96825 1.21117 0.98821 0.93515 0.98116 1.21191 0.96989 0.98875 0.95416 1.21195 0.94468 0.98483 0.99482 1.21078 0.99659 0.94631 0.98115 1.21169 0.96698 0.99678 0.96904 1.22038 1.00896 0.89245 0.88009 1.46135 1.58858 1.23310 1.09601 1.20801 0.76863 0.82133 0.89221 1.90732 1.44523 1.26971 1.79239 1.23370 1.00060 1.01491 0.96438 0.88443 0.88088 0.86949 0.88212 0.88899 0.95062 0.94635 0.92555 0.85358 0.85627 0.86005 0.85823 0.85230 0.87992 0.90176 0.75020 0.86386 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 11.90 29.02 0.35 -1.74 16 2 C -0.16 -2.18 8.25 -36.02 -0.30 -2.48 16 3 C 0.11 1.70 5.22 -5.19 -0.03 1.67 16 4 N -0.58 -11.41 2.42 -176.43 -0.43 -11.84 16 5 C 0.22 5.13 4.21 -5.19 -0.02 5.11 16 6 C -0.53 -14.63 9.94 -34.44 -0.34 -14.97 16 7 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 10 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.53 10.14 5.93 -10.99 -0.07 10.07 16 15 O -0.53 -12.17 15.13 5.55 0.08 -12.08 16 16 C -0.05 -0.76 0.42 -155.18 -0.06 -0.83 16 17 C -0.06 -0.80 2.78 -104.63 -0.29 -1.09 16 18 C -0.10 -1.31 9.18 -39.58 -0.36 -1.68 16 19 C -0.11 -1.24 10.05 -39.58 -0.40 -1.64 16 20 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 21 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 22 C -0.13 -1.28 7.06 -39.58 -0.28 -1.56 16 23 C 0.12 1.53 6.60 -3.12 -0.02 1.51 16 24 N -0.72 -9.33 6.24 -59.16 -0.37 -9.70 16 25 C 0.52 7.95 8.44 -10.81 -0.09 7.86 16 26 O -0.54 -9.90 18.03 5.56 0.10 -9.80 16 27 C -0.17 -2.27 3.77 -26.69 -0.10 -2.37 16 28 H 0.10 0.88 5.29 -52.48 -0.28 0.61 16 29 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.10 1.37 2.20 -51.93 -0.11 1.25 16 32 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 33 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 34 H 0.04 0.91 6.90 -51.93 -0.36 0.55 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.13 1.94 7.91 -52.48 -0.42 1.52 16 37 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.08 3.98 -52.49 -0.21 0.87 16 41 H 0.10 1.40 6.99 -51.93 -0.36 1.04 16 42 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 43 H 0.41 4.52 8.96 -40.82 -0.37 4.15 16 44 H 0.12 1.19 4.96 -51.93 -0.26 0.93 16 45 H 0.13 1.83 3.40 -51.93 -0.18 1.66 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -34.88 353.69 -7.53 -42.41 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.44 Total: 8.41 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.91 Total: -3.15 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.02 Total: -47.80 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.18 Total: -21.88 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.88 -7.53 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.723 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds