Wall clock time and date at job start Tue Mar 31 2020 16:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 120.00230 * 2 1 4 4 N 1.46501 * 109.47072 * 128.27112 * 3 2 1 5 5 C 1.46507 * 119.99656 * 82.00189 * 4 3 2 6 6 C 1.50698 * 109.46769 * 90.00158 * 5 4 3 7 7 H 1.07989 * 120.00209 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99608 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00228 * 179.97438 * 8 6 5 10 10 Si 1.86809 * 120.00104 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46753 * 269.99807 * 10 8 6 12 12 H 1.48497 * 109.46983 * 29.99608 * 10 8 6 13 13 H 1.48500 * 109.46994 * 149.99824 * 10 8 6 14 14 C 1.34779 * 120.00124 * 262.00543 * 4 3 2 15 15 O 1.21287 * 119.99592 * 183.62769 * 14 4 3 16 16 C 1.50694 * 119.99978 * 3.62046 * 14 4 3 17 17 C 1.50696 * 110.85972 * 301.41482 * 16 14 4 18 18 C 1.38236 * 119.99551 * 306.66868 * 17 16 14 19 19 C 1.38238 * 119.99464 * 179.76813 * 18 17 16 20 20 C 1.38240 * 120.00367 * 0.48706 * 19 18 17 21 21 C 1.38233 * 119.99517 * 359.79175 * 20 19 18 22 22 C 1.38231 * 120.00054 * 126.94708 * 17 16 14 23 23 C 1.54482 * 110.96832 * 177.62229 * 16 14 4 24 24 N 1.46768 * 105.47429 * 267.29958 * 23 16 14 25 25 C 1.34424 * 111.30063 * 342.98176 * 24 23 16 26 26 O 1.21281 * 124.94273 * 180.43471 * 25 24 23 27 27 C 1.51386 * 110.12448 * 0.40418 * 25 24 23 28 28 H 1.08003 * 119.99597 * 355.31237 * 1 2 3 29 29 H 1.07995 * 120.00262 * 175.30700 * 1 2 3 30 30 H 1.07994 * 120.00298 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46695 * 8.27689 * 3 2 1 32 32 H 1.08991 * 109.47291 * 248.27624 * 3 2 1 33 33 H 1.09000 * 109.46903 * 329.99764 * 5 4 3 34 34 H 1.08998 * 109.46716 * 210.00063 * 5 4 3 35 35 H 0.97000 * 120.00459 * 180.02562 * 9 8 6 36 36 H 1.08003 * 120.00520 * 0.02562 * 18 17 16 37 37 H 1.08006 * 119.99793 * 180.25698 * 19 18 17 38 38 H 1.07993 * 119.99702 * 179.76962 * 20 19 18 39 39 H 1.08002 * 119.99870 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00353 * 0.02562 * 22 17 16 41 41 H 1.08994 * 110.24778 * 26.29581 * 23 16 14 42 42 H 1.09001 * 110.24605 * 148.21436 * 23 16 14 43 43 H 0.97000 * 124.35369 * 162.95859 * 24 23 16 44 44 H 1.08994 * 110.49971 * 257.59996 * 27 25 24 45 45 H 1.08999 * 110.51960 * 134.91661 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0486 1.3002 1.0844 5 6 4.3437 0.6422 0.8945 6 6 5.3339 1.6330 0.3388 7 1 5.0289 2.6508 0.1459 8 6 6.6291 1.2399 0.0766 9 7 7.4932 2.1044 -0.4088 10 14 7.1565 -0.5210 0.4095 11 1 7.6682 -0.6300 1.7993 12 1 5.9925 -1.4270 0.2381 13 1 8.2279 -0.9055 -0.5441 14 6 2.7634 1.9010 2.2567 15 8 3.6026 1.9544 3.1307 16 6 1.4019 2.5066 2.4813 17 6 1.1064 3.5614 1.4464 18 6 1.9995 4.5960 1.2396 19 6 1.7307 5.5610 0.2869 20 6 0.5640 5.4969 -0.4518 21 6 -0.3318 4.4655 -0.2409 22 6 -0.0605 3.4976 0.7081 23 6 1.2825 3.0841 3.9091 24 7 0.7121 2.0035 4.7222 25 6 0.1519 1.0557 3.9509 26 8 -0.3974 0.0573 4.3661 27 6 0.3056 1.4161 2.4886 28 1 -0.5399 0.9322 0.0764 29 1 -0.5400 -0.9321 -0.0765 30 1 1.8500 -0.9352 -0.0004 31 1 1.3645 2.1283 0.1479 32 1 2.5746 1.4296 -0.9546 33 1 4.2305 -0.1883 0.1976 34 1 4.7041 0.2664 1.8521 35 1 8.4044 1.8278 -0.5937 36 1 2.9093 4.6482 1.8193 37 1 2.4305 6.3671 0.1224 38 1 0.3524 6.2529 -1.1934 39 1 -1.2435 4.4156 -0.8177 40 1 -0.7606 2.6920 0.8731 41 1 2.2664 3.3615 4.2873 42 1 0.6201 3.9498 3.9117 43 1 0.7364 1.9765 5.6915 44 1 -0.6294 1.8125 2.0929 45 1 0.6271 0.5481 1.9130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597684442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:03 Heat of formation + Delta-G solvation = -14.571432 kcal Electronic energy + Delta-G solvation = -29703.224851 eV Core-core repulsion = 25879.332693 eV Total energy + Delta-G solvation = -3823.892158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.76630 -40.29289 -39.75762 -37.64324 -37.24055 -35.24385 -33.98341 -33.83919 -31.94713 -30.51293 -30.20747 -28.57173 -27.02177 -25.53762 -23.93430 -23.68525 -22.29285 -21.54985 -20.86707 -19.90472 -19.10506 -18.70135 -18.60716 -17.49596 -17.10780 -16.75871 -16.55158 -16.15929 -15.92506 -15.65592 -15.56686 -15.48090 -14.93029 -14.72733 -14.58063 -14.52831 -14.20601 -13.97843 -13.90622 -13.75437 -13.55829 -13.15255 -13.02780 -12.78626 -12.69021 -12.38676 -12.20507 -12.02945 -11.96416 -11.79045 -11.75969 -11.08738 -10.87001 -10.84777 -10.24138 -10.13676 -9.81949 -9.56490 -9.46016 -8.35733 -6.39732 0.32746 0.48412 1.25421 1.29963 1.32215 1.40379 1.43918 1.59359 2.21152 2.27555 2.34403 2.77750 2.98235 3.11689 3.23406 3.38994 3.56169 3.87847 3.95024 4.05956 4.11955 4.16256 4.28736 4.45021 4.48997 4.51186 4.58003 4.63470 4.67093 4.71448 4.75127 4.85681 4.88056 5.02724 5.11351 5.16068 5.41699 5.51863 5.54407 5.60938 5.65564 5.68531 5.70153 5.74531 5.91332 6.07886 6.20756 6.58719 6.61672 7.13095 7.16383 7.29586 8.80806 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010735 B = 0.005530 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.731406 B = 5061.928609 C = 5986.119053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.196 4.196 3 C 0.109 3.891 4 N -0.584 5.584 5 C 0.224 3.776 6 C -0.529 4.529 7 H 0.034 0.966 8 C 0.016 3.984 9 N -0.941 5.941 10 Si 0.939 3.061 11 H -0.277 1.277 12 H -0.242 1.242 13 H -0.273 1.273 14 C 0.516 3.484 15 O -0.580 6.580 16 C -0.043 4.043 17 C -0.075 4.075 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.105 4.105 22 C -0.122 4.122 23 C 0.125 3.875 24 N -0.716 5.716 25 C 0.517 3.483 26 O -0.574 6.574 27 C -0.167 4.167 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.268 0.732 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.149 0.851 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.419 0.581 44 H 0.159 0.841 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.133 4.519 -0.369 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 C -0.013 4.013 4 N -0.312 5.312 5 C 0.102 3.898 6 C -0.567 4.567 7 H 0.052 0.948 8 C -0.182 4.182 9 N -0.581 5.581 10 Si 0.762 3.238 11 H -0.203 1.203 12 H -0.166 1.166 13 H -0.198 1.198 14 C 0.304 3.696 15 O -0.460 6.460 16 C -0.047 4.047 17 C -0.076 4.076 18 C -0.142 4.142 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.139 4.139 23 C 0.000 4.000 24 N -0.371 5.371 25 C 0.304 3.696 26 O -0.454 6.454 27 C -0.205 4.205 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.141 0.859 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.144 0.856 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.100 0.900 42 H 0.134 0.866 43 H 0.259 0.741 44 H 0.176 0.824 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.763 4.057 0.098 22.138 hybrid contribution 1.889 -0.487 0.676 2.065 sum -19.873 3.570 0.773 20.206 Atomic orbital electron populations 1.24260 0.94483 1.04182 0.96423 1.23266 0.97230 0.98118 1.02878 1.21459 0.91361 0.98182 0.90259 1.47825 1.16320 1.53722 1.13332 1.19342 0.81476 0.92994 0.95982 1.21453 0.95602 0.97214 1.42461 0.94805 1.25733 0.96270 1.01981 0.94217 1.70027 1.05242 1.36923 1.45911 0.85848 0.79396 0.80251 0.78303 1.20325 1.16580 1.19809 1.20573 0.89118 0.78096 0.81823 1.90649 1.50479 1.59918 1.44949 1.20437 0.92130 0.95415 0.96689 1.18996 0.96859 0.94238 0.97468 1.20976 0.98383 0.95455 0.99370 1.21331 0.98342 0.98675 0.95586 1.21556 0.93320 0.99280 0.98978 1.21536 1.00411 0.93122 0.97174 1.21432 0.95695 1.00620 0.96146 1.22119 1.00836 0.90007 0.87008 1.46157 1.57755 1.22960 1.10186 1.21124 0.76475 0.81757 0.90243 1.90714 1.46418 1.28328 1.79950 1.23443 1.01069 1.00803 0.95215 0.85986 0.85992 0.88150 0.85929 0.91036 0.93594 0.96686 0.92290 0.88984 0.85593 0.83314 0.81876 0.82494 0.89972 0.86575 0.74122 0.82362 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 11.90 67.78 0.81 -1.85 16 2 C -0.20 -4.91 8.25 25.65 0.21 -4.70 16 3 C 0.11 3.37 5.22 85.64 0.45 3.82 16 4 N -0.58 -23.87 2.42 -830.48 -2.01 -25.88 16 5 C 0.22 11.11 4.21 85.63 0.36 11.47 16 6 C -0.53 -31.06 9.94 25.60 0.25 -30.81 16 7 H 0.03 2.21 8.06 -2.92 -0.02 2.18 16 8 C 0.02 0.97 5.47 84.65 0.46 1.43 16 9 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 10 Si 0.94 44.99 27.47 68.60 1.88 46.87 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.52 20.68 5.93 87.65 0.52 21.20 16 15 O -0.58 -28.57 15.13 -3.05 -0.05 -28.61 16 16 C -0.04 -1.18 0.42 -52.62 -0.02 -1.20 16 17 C -0.07 -1.75 2.78 -19.87 -0.06 -1.81 16 18 C -0.12 -3.42 9.18 22.27 0.20 -3.22 16 19 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 20 C -0.11 -1.85 10.05 22.27 0.22 -1.62 16 21 C -0.10 -1.37 10.05 22.27 0.22 -1.15 16 22 C -0.12 -1.91 7.06 22.27 0.16 -1.75 16 23 C 0.12 3.05 6.60 86.83 0.57 3.62 16 24 N -0.72 -17.78 6.24 -459.67 -2.87 -20.65 16 25 C 0.52 14.83 8.44 87.93 0.74 15.57 16 26 O -0.57 -20.36 18.03 -3.03 -0.05 -20.42 16 27 C -0.17 -3.88 3.77 30.62 0.12 -3.77 16 28 H 0.12 1.43 5.29 -2.91 -0.02 1.42 16 29 H 0.12 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.10 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.12 3.13 2.20 -2.39 -0.01 3.13 16 32 H 0.07 2.48 8.13 -2.39 -0.02 2.46 16 33 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16 34 H 0.02 0.81 6.90 -2.39 -0.02 0.79 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.09 3.14 7.91 -2.91 -0.02 3.11 16 37 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.16 1.55 3.98 -2.91 -0.01 1.54 16 41 H 0.08 2.39 6.99 -2.39 -0.02 2.37 16 42 H 0.12 2.05 7.88 -2.39 -0.02 2.03 16 43 H 0.42 8.94 8.96 -92.71 -0.83 8.11 16 44 H 0.16 2.32 4.96 -2.39 -0.01 2.31 16 45 H 0.12 3.16 3.40 -2.39 -0.01 3.16 16 Total: -1.00 -82.88 353.69 2.81 -80.07 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.16 Total: 24.83 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.45 Total: 2.71 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -4.58 Total: -105.44 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.10 Total: -49.03 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -82.88 2.81 -80.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.497 kcal (2) G-P(sol) polarization free energy of solvation -82.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds