Wall clock time and date at job start Tue Mar 31 2020 16:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46761 * 2 1 4 4 N 1.46500 * 109.46836 * 119.99362 * 2 1 3 5 5 C 1.46501 * 120.00448 * 306.82423 * 4 2 1 6 6 C 1.50698 * 109.46956 * 270.00097 * 5 4 2 7 7 H 1.07999 * 120.00331 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00231 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99845 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00493 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46815 * 59.99901 * 10 8 6 12 12 H 1.48497 * 109.47520 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47030 * 300.00469 * 10 8 6 14 14 C 1.34777 * 119.99954 * 126.81898 * 4 2 1 15 15 O 1.21485 * 119.99974 * 186.96924 * 14 4 2 16 16 C 1.48288 * 119.99749 * 6.97470 * 14 4 2 17 17 C 1.35675 * 118.87184 * 29.01287 * 16 14 4 18 18 C 1.42055 * 119.93239 * 180.02562 * 17 16 14 19 19 O 1.21929 * 121.06499 * 180.02562 * 18 17 16 20 20 C 1.47215 * 117.86618 * 0.02562 * 18 17 16 21 21 C 1.39586 * 121.35594 * 179.97438 * 20 18 17 22 22 C 1.36644 * 119.69244 * 180.02562 * 21 20 18 23 23 C 1.38881 * 120.55555 * 359.94385 * 22 21 20 24 24 C 1.37711 * 120.72603 * 0.07943 * 23 22 21 25 25 C 1.39297 * 119.71882 * 359.95041 * 24 23 22 26 26 N 1.36466 * 118.86837 * 209.03206 * 16 14 4 27 27 C 1.46500 * 119.18376 * 359.97345 * 26 16 14 28 28 H 1.08997 * 109.47579 * 305.90803 * 1 2 3 29 29 H 1.09000 * 109.47162 * 65.91378 * 1 2 3 30 30 H 1.09002 * 109.47074 * 185.90452 * 1 2 3 31 31 H 1.08998 * 109.47168 * 239.99410 * 2 1 3 32 32 H 1.09003 * 109.47166 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46869 * 299.99120 * 3 2 1 34 34 H 1.08998 * 109.47761 * 59.99773 * 3 2 1 35 35 H 1.08999 * 109.46835 * 29.99452 * 5 4 2 36 36 H 1.08998 * 109.47639 * 149.99767 * 5 4 2 37 37 H 0.97006 * 120.00479 * 179.97438 * 9 8 6 38 38 H 1.07996 * 120.03503 * 359.97438 * 17 16 14 39 39 H 1.07997 * 120.15300 * 0.02562 * 21 20 18 40 40 H 1.08001 * 119.71996 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.63680 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.14124 * 180.22951 * 24 23 22 43 43 H 1.09003 * 109.47706 * 275.50326 * 27 26 16 44 44 H 1.09004 * 109.46721 * 35.50291 * 27 26 16 45 45 H 1.08997 * 109.47293 * 155.49617 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.5455 -0.2829 2.5217 6 6 2.4557 0.7839 3.0735 7 1 3.3020 1.1239 2.4950 8 6 2.2082 1.3258 4.3169 9 7 1.1780 0.9114 5.0215 10 14 3.3368 2.6476 5.0013 11 1 3.3333 3.8212 4.0913 12 1 2.8576 3.0609 6.3447 13 1 4.7171 2.1113 5.1120 14 6 2.9024 -1.7008 1.0775 15 8 3.2109 -2.3558 2.0530 16 6 3.4986 -2.0128 -0.2439 17 6 3.6483 -1.0121 -1.1477 18 6 4.2163 -1.2858 -2.4207 19 8 4.3609 -0.4021 -3.2483 20 6 4.6249 -2.6705 -2.7085 21 6 5.1902 -3.0208 -3.9358 22 6 5.5567 -4.3167 -4.1669 23 6 5.3724 -5.2874 -3.1908 24 6 4.8161 -4.9641 -1.9733 25 6 4.4344 -3.6495 -1.7156 26 7 3.8775 -3.2966 -0.5092 27 6 3.6849 -4.3247 0.5165 28 1 -0.3634 0.6027 0.8323 29 1 -0.3633 0.4194 -0.9382 30 1 -0.3633 -1.0222 0.1057 31 1 1.8933 -0.5139 -0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.5321 0.1103 2.4408 36 1 1.5488 -1.1444 3.1894 37 1 1.0040 1.2923 5.8965 38 1 3.3352 -0.0086 -0.9000 39 1 5.3373 -2.2710 -4.6990 40 1 5.9938 -4.5883 -5.1164 41 1 5.6678 -6.3071 -3.3892 42 1 4.6805 -5.7258 -1.2197 43 1 4.5302 -4.3144 1.2047 44 1 2.7660 -4.1214 1.0666 45 1 3.6149 -5.3033 0.0416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601026501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:59 Heat of formation + Delta-G solvation = 9.086031 kcal Electronic energy + Delta-G solvation = -28824.768164 eV Core-core repulsion = 25001.901871 eV Total energy + Delta-G solvation = -3822.866293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57592 -39.55055 -38.19971 -37.24954 -36.33655 -33.25886 -32.63541 -31.10053 -31.04115 -30.49884 -27.64279 -27.07246 -26.63930 -24.96977 -23.89563 -22.81510 -21.71646 -21.24721 -19.02025 -18.79392 -18.17459 -16.97259 -16.51091 -16.25225 -15.82310 -15.47543 -15.24640 -14.91093 -14.53915 -14.50931 -14.31223 -14.13500 -13.93620 -13.58409 -13.35935 -13.13308 -12.66650 -12.48379 -12.29270 -12.12279 -11.91591 -11.83630 -11.60336 -11.54320 -11.31833 -11.25442 -11.02902 -10.87365 -10.65526 -10.49582 -10.12469 -9.81728 -9.68047 -9.40168 -9.20570 -9.02396 -8.50717 -7.91583 -7.63528 -6.13493 -4.18000 0.50581 0.79507 1.50451 2.35816 2.88814 3.27723 3.28463 3.32445 3.37359 3.54532 3.90391 4.24174 4.37243 4.41425 4.51297 4.64387 4.79926 4.95942 5.09636 5.16790 5.21065 5.21581 5.37371 5.41971 5.48813 5.60895 5.66681 5.70522 5.78079 5.78400 5.93689 6.01195 6.11021 6.18689 6.22594 6.29252 6.37308 6.48149 6.53373 6.69263 6.82555 6.91347 7.00767 7.24426 7.34446 7.81771 7.90699 8.08668 8.10613 8.53811 8.86158 9.46727 10.94564 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.003724 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.444382 B = 7517.485400 C = 7997.750499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 C -0.166 4.166 4 N -0.563 5.563 5 C 0.244 3.756 6 C -0.528 4.528 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.538 3.462 15 O -0.525 6.525 16 C 0.176 3.824 17 C -0.303 4.303 18 C 0.419 3.581 19 O -0.496 6.496 20 C -0.205 4.205 21 C -0.027 4.027 22 C -0.168 4.168 23 C -0.056 4.056 24 C -0.178 4.178 25 C 0.204 3.796 26 N -0.479 5.479 27 C 0.064 3.936 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.265 0.735 38 H 0.180 0.820 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.137 0.863 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 -11.513 -15.354 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.006 4.006 3 C -0.223 4.223 4 N -0.293 5.293 5 C 0.126 3.874 6 C -0.567 4.567 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.322 3.678 15 O -0.403 6.403 16 C 0.064 3.936 17 C -0.330 4.330 18 C 0.307 3.693 19 O -0.379 6.379 20 C -0.209 4.209 21 C -0.045 4.045 22 C -0.187 4.187 23 C -0.075 4.075 24 C -0.199 4.199 25 C 0.100 3.900 26 N -0.169 5.169 27 C -0.077 4.077 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.197 0.803 39 H 0.155 0.845 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.101 0.899 44 H 0.117 0.883 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.256 -11.472 -14.883 19.071 hybrid contribution 0.670 0.707 0.629 1.160 sum 3.927 -10.765 -14.255 18.289 Atomic orbital electron populations 1.22125 0.94821 1.02212 1.02530 1.21960 0.95093 0.94663 0.88861 1.22245 1.01289 0.95527 1.03266 1.48275 1.40302 1.30753 1.10011 1.19450 0.95425 0.96372 0.76142 1.21369 1.12241 1.20770 1.02304 0.92131 1.24902 0.95410 0.97060 0.96467 1.69913 1.27859 1.42800 1.12575 0.86576 0.81062 0.81789 0.78155 1.20077 1.21176 1.20193 1.17921 0.81245 0.82389 0.86201 1.90775 1.60921 1.50035 1.38616 1.20365 0.93528 0.84220 0.95449 1.23239 1.11964 1.01782 0.95967 1.18487 0.76781 0.86867 0.87191 1.90683 1.50011 1.47846 1.49317 1.20443 1.09138 0.95601 0.95739 1.20850 0.92289 0.96557 0.94822 1.20836 1.04489 0.93135 1.00269 1.21110 0.94716 0.99584 0.92101 1.20819 1.05780 0.93773 0.99500 1.17989 0.93458 0.94058 0.84448 1.43027 1.53167 1.07454 1.13250 1.22495 1.05776 0.89382 0.90044 0.91083 0.91882 0.92770 0.87851 0.92331 0.92311 0.89424 0.93861 0.93542 0.92568 0.80326 0.84500 0.85435 0.85196 0.84573 0.89852 0.88290 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.86 37.16 0.33 -2.01 16 2 C 0.10 1.61 2.35 -67.93 -0.16 1.45 16 3 C -0.17 -2.74 7.89 37.16 0.29 -2.44 16 4 N -0.56 -11.24 2.39 -168.42 -0.40 -11.64 16 5 C 0.24 5.89 4.82 -5.19 -0.03 5.86 16 6 C -0.53 -13.95 7.87 -34.44 -0.27 -14.22 16 7 H 0.06 1.61 7.58 -52.49 -0.40 1.21 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 10 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.54 10.63 6.87 -12.13 -0.08 10.54 16 15 O -0.53 -11.63 13.56 5.38 0.07 -11.56 16 16 C 0.18 2.95 6.24 -82.59 -0.52 2.44 16 17 C -0.30 -5.07 7.24 -39.04 -0.28 -5.35 16 18 C 0.42 7.02 6.97 -34.47 -0.24 6.78 16 19 O -0.50 -9.29 17.34 4.98 0.09 -9.20 16 20 C -0.21 -2.94 5.89 -104.81 -0.62 -3.56 16 21 C -0.03 -0.32 9.61 -39.65 -0.38 -0.70 16 22 C -0.17 -1.54 9.97 -39.92 -0.40 -1.94 16 23 C -0.06 -0.47 10.01 -39.54 -0.40 -0.87 16 24 C -0.18 -1.77 9.20 -39.38 -0.36 -2.13 16 25 C 0.20 2.68 6.53 -84.00 -0.55 2.13 16 26 N -0.48 -6.87 3.08 -117.79 -0.36 -7.23 16 27 C 0.06 0.77 8.75 59.85 0.52 1.30 16 28 H 0.07 1.15 6.79 -51.93 -0.35 0.80 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.60 4.13 -51.93 -0.21 1.39 16 32 H 0.06 1.00 6.84 -51.93 -0.36 0.65 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.65 6.94 -51.93 -0.36 1.29 16 35 H 0.04 1.05 6.23 -51.93 -0.32 0.73 16 36 H 0.05 1.26 7.34 -51.93 -0.38 0.88 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.18 3.02 3.18 -52.49 -0.17 2.85 16 39 H 0.14 1.55 7.78 -52.49 -0.41 1.14 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.14 1.03 6.05 -52.49 -0.32 0.71 16 43 H 0.08 1.04 8.03 -51.93 -0.42 0.63 16 44 H 0.10 1.37 6.19 -51.93 -0.32 1.05 16 45 H 0.08 0.68 5.85 -51.93 -0.30 0.37 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -31.56 356.80 -8.31 -39.87 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.57 Total: 3.85 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -3.23 Total: -1.08 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.03 Total: -43.39 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.16 Total: -20.76 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.56 -8.31 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.960 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds