Wall clock time and date at job start Tue Mar 31 2020 15:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47132 * 2 1 4 4 H 1.08997 * 109.46766 * 305.00280 * 3 2 1 5 5 N 1.46496 * 109.46969 * 65.00297 * 3 2 1 6 6 C 1.34770 * 120.00327 * 268.05560 * 5 3 2 7 7 O 1.21620 * 119.99754 * 0.02562 * 6 5 3 8 8 C 1.47432 * 120.00483 * 180.02562 * 6 5 3 9 9 C 1.39223 * 120.28125 * 354.32063 * 8 6 5 10 10 C 1.38219 * 120.09378 * 179.97438 * 9 8 6 11 11 C 1.38826 * 120.67612 * 0.02562 * 10 9 8 12 12 C 1.37599 * 120.56667 * 359.97438 * 11 10 9 13 13 C 1.40700 * 119.88413 * 359.73783 * 12 11 10 14 14 C 1.40898 * 120.32786 * 180.25600 * 13 12 11 15 15 H 1.07993 * 119.99598 * 145.38881 * 14 13 12 16 16 C 1.40267 * 119.99957 * 325.38322 * 14 13 12 17 17 N 1.30629 * 120.00407 * 349.71310 * 16 14 13 18 18 Si 1.86802 * 119.99809 * 169.70519 * 16 14 13 19 19 H 1.48503 * 109.47034 * 90.00398 * 18 16 14 20 20 H 1.48502 * 109.47137 * 210.00296 * 18 16 14 21 21 H 1.48495 * 109.47216 * 330.00473 * 18 16 14 22 22 C 1.50706 * 109.46812 * 185.00423 * 3 2 1 23 23 C 1.41384 * 128.00340 * 288.53801 * 22 3 2 24 24 C 1.50700 * 126.80513 * 0.03924 * 23 22 3 25 25 N 1.30177 * 106.39206 * 179.89920 * 23 22 3 26 26 O 1.20927 * 111.60488 * 0.38951 * 25 23 22 27 27 C 1.34043 * 111.56459 * 359.74816 * 26 25 23 28 28 C 1.50707 * 126.77517 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.46426 * 299.99821 * 1 2 3 30 30 H 1.08993 * 109.47145 * 59.99527 * 1 2 3 31 31 H 1.09000 * 109.46806 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46838 * 240.00049 * 2 1 3 33 33 H 1.09002 * 109.46922 * 120.00524 * 2 1 3 34 34 H 0.97001 * 119.99858 * 88.05802 * 5 3 2 35 35 H 1.08003 * 119.95199 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.66197 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.71536 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.05587 * 180.02562 * 12 11 10 39 39 H 0.97001 * 120.00498 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.46964 * 95.61198 * 24 23 22 41 41 H 1.09002 * 109.47019 * 215.61695 * 24 23 22 42 42 H 1.09005 * 109.47134 * 335.61342 * 24 23 22 43 43 H 1.09001 * 109.46845 * 270.00012 * 28 27 26 44 44 H 1.09002 * 109.46933 * 29.99498 * 28 27 26 45 45 H 1.08996 * 109.47159 * 150.00090 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6526 2.0974 1.2518 6 6 0.4953 2.7844 1.3228 7 8 -0.2276 2.8603 0.3477 8 6 0.1055 3.4440 2.5824 9 6 0.8670 3.2640 3.7340 10 6 0.4984 3.8847 4.9127 11 6 -0.6302 4.6914 4.9655 12 6 -1.4027 4.8883 3.8439 13 6 -1.0459 4.2728 2.6300 14 6 -1.8271 4.4724 1.4746 15 1 -1.3546 4.5174 0.5045 16 6 -3.2184 4.6124 1.5843 17 7 -3.8129 4.3599 2.7198 18 14 -4.2214 5.1602 0.1066 19 1 -4.6520 3.9689 -0.6685 20 1 -5.4177 5.9081 0.5701 21 1 -3.3919 6.0389 -0.7564 22 6 3.5420 1.4442 -0.1239 23 6 4.4960 1.0605 0.8464 24 6 4.2152 0.5570 2.2388 25 7 5.6649 1.2254 0.2977 26 8 5.5711 1.6490 -0.8311 27 6 4.2906 1.8195 -1.1885 28 6 3.7838 2.3287 -2.5133 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 2.2290 2.0366 2.0296 35 1 1.7471 2.6386 3.7062 36 1 1.0939 3.7399 5.8020 37 1 -0.9042 5.1685 5.8948 38 1 -2.2787 5.5179 3.8942 39 1 -4.7750 4.4571 2.7958 40 1 4.2188 -0.5330 2.2385 41 1 4.9841 0.9228 2.9193 42 1 3.2396 0.9170 2.5655 43 1 3.6895 3.4139 -2.4734 44 1 4.4855 2.0538 -3.3008 45 1 2.8099 1.8869 -2.7239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601375176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:02 Heat of formation + Delta-G solvation = 33.997270 kcal Electronic energy + Delta-G solvation = -28506.952307 eV Core-core repulsion = 24685.166246 eV Total energy + Delta-G solvation = -3821.786061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.96193 -39.33153 -37.31118 -35.97681 -34.01453 -33.77912 -33.17309 -31.92561 -29.93251 -29.48640 -28.87925 -28.09654 -26.25098 -25.26651 -22.43767 -22.35621 -21.13467 -20.38823 -20.35023 -19.34398 -17.67525 -17.61071 -16.96793 -16.31578 -15.62684 -15.25372 -14.69363 -14.37157 -14.18769 -13.99708 -13.95344 -13.50578 -13.28327 -13.24493 -13.04948 -13.03699 -12.76711 -12.65810 -12.43929 -12.32638 -12.00291 -11.61641 -11.46996 -11.22131 -11.12642 -11.03718 -10.87786 -10.72520 -10.59465 -10.51011 -10.08845 -9.88551 -9.70370 -9.27811 -9.20927 -8.49737 -8.36455 -7.61927 -7.37842 -6.82143 -4.40391 1.40039 2.12242 2.33315 2.78970 3.04426 3.08535 3.15082 3.21329 3.81223 3.95594 4.11577 4.19712 4.40306 4.65569 4.77730 4.88796 5.15628 5.24994 5.26618 5.32746 5.37694 5.43442 5.55715 5.60474 5.62199 5.74292 5.80964 5.90490 5.95334 6.02107 6.09501 6.17312 6.22175 6.27130 6.43327 6.60573 6.78281 6.92025 7.05882 7.12507 7.20807 7.43192 7.59394 7.85299 7.95336 8.14722 8.23255 8.33059 8.63778 8.79687 8.87211 9.36619 10.13778 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.004070 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.140218 B = 6877.577849 C = 8002.799746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.226 3.774 4 H 0.101 0.899 5 N -0.742 5.742 6 C 0.568 3.432 7 O -0.532 6.532 8 C -0.262 4.262 9 C -0.058 4.058 10 C -0.244 4.244 11 C -0.095 4.095 12 C -0.147 4.147 13 C 0.148 3.852 14 C -0.415 4.415 15 H 0.105 0.895 16 C 0.071 3.929 17 N -0.792 5.792 18 Si 0.916 3.084 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.260 1.260 22 C -0.204 4.204 23 C 0.030 3.970 24 C -0.081 4.081 25 N -0.369 5.369 26 O 0.094 5.906 27 C -0.021 4.021 28 C -0.076 4.076 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.390 0.610 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.282 0.718 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.233 -5.720 -5.286 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.120 3.880 4 H 0.119 0.881 5 N -0.399 5.399 6 C 0.363 3.637 7 O -0.410 6.410 8 C -0.267 4.267 9 C -0.077 4.077 10 C -0.264 4.264 11 C -0.114 4.114 12 C -0.166 4.166 13 C 0.144 3.856 14 C -0.443 4.443 15 H 0.123 0.877 16 C -0.148 4.148 17 N -0.417 5.417 18 Si 0.740 3.260 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.183 1.183 22 C -0.208 4.208 23 C -0.129 4.129 24 C -0.139 4.139 25 N -0.076 5.076 26 O 0.030 5.970 27 C -0.085 4.085 28 C -0.133 4.133 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.227 0.773 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.707 -5.853 -5.484 13.379 hybrid contribution -0.926 0.075 0.001 0.929 sum 9.781 -5.778 -5.483 12.615 Atomic orbital electron populations 1.21729 0.94151 1.00506 1.03835 1.21915 0.97363 0.95493 1.01642 1.18956 0.84967 0.93912 0.90178 0.88093 1.46273 1.24139 1.56494 1.12972 1.18382 0.79419 0.76982 0.88967 1.90678 1.51004 1.61241 1.38044 1.19443 1.05147 1.09736 0.92356 1.20631 0.96543 0.97334 0.93190 1.20274 1.01391 1.07837 0.96885 1.20796 0.95235 0.98209 0.97184 1.21331 1.00128 1.02228 0.92947 1.17455 0.88957 0.86382 0.92847 1.20116 0.90830 1.37444 0.95944 0.87746 1.26096 0.98943 0.92519 0.97201 1.69715 1.11739 1.34286 1.25988 0.86182 0.78698 0.79623 0.81491 1.19312 1.20354 1.18344 1.21223 0.98004 1.07727 0.93872 1.23381 0.88320 1.01878 0.99322 1.20317 1.03092 1.01706 0.88802 1.73804 1.23108 1.17004 0.93651 1.84788 1.26910 1.61596 1.23681 1.24238 0.83448 1.01600 0.99186 1.20394 1.01812 1.02309 0.88822 0.91605 0.92119 0.93698 0.91884 0.92081 0.77291 0.89601 0.89130 0.89093 0.86653 0.90717 0.89924 0.90167 0.89965 0.89123 0.89844 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.73 37.16 0.32 -1.94 16 2 C -0.13 -1.68 5.59 -26.73 -0.15 -1.83 16 3 C 0.23 3.32 2.56 -69.08 -0.18 3.14 16 4 H 0.10 1.60 6.57 -51.93 -0.34 1.25 16 5 N -0.74 -12.62 4.73 -56.01 -0.26 -12.88 16 6 C 0.57 12.30 6.32 -12.52 -0.08 12.22 16 7 O -0.53 -12.74 11.65 5.26 0.06 -12.68 16 8 C -0.26 -6.16 5.92 -104.37 -0.62 -6.78 16 9 C -0.06 -1.21 9.52 -39.22 -0.37 -1.58 16 10 C -0.24 -5.10 10.03 -39.37 -0.39 -5.49 16 11 C -0.10 -2.11 10.01 -39.60 -0.40 -2.51 16 12 C -0.15 -3.65 8.62 -38.89 -0.34 -3.99 16 13 C 0.15 3.84 5.49 -106.54 -0.59 3.25 16 14 C -0.42 -11.00 7.64 -37.81 -0.29 -11.29 16 15 H 0.10 2.85 5.97 -52.49 -0.31 2.53 16 16 C 0.07 1.77 5.23 -17.30 -0.09 1.68 16 17 N -0.79 -20.11 11.23 55.56 0.62 -19.49 16 18 Si 0.92 19.14 29.57 -169.99 -5.03 14.12 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.20 -2.74 5.19 -104.42 -0.54 -3.28 16 23 C 0.03 0.41 7.19 -82.10 -0.59 -0.18 16 24 C -0.08 -0.89 10.24 36.01 0.37 -0.52 16 25 N -0.37 -5.32 12.07 33.43 0.40 -4.92 16 26 O 0.09 1.26 11.20 17.17 0.19 1.45 16 27 C -0.02 -0.25 7.49 -35.30 -0.26 -0.52 16 28 C -0.08 -0.65 10.12 36.01 0.36 -0.28 16 29 H 0.06 1.24 6.22 -51.93 -0.32 0.92 16 30 H 0.06 0.99 8.06 -51.93 -0.42 0.58 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.39 6.04 3.65 -40.82 -0.15 5.89 16 35 H 0.09 1.49 6.44 -52.48 -0.34 1.15 16 36 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 2.93 6.67 -52.49 -0.35 2.58 16 39 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.91 5.26 -51.93 -0.27 0.64 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.76 7.60 -51.93 -0.39 0.36 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -29.36 365.49 -8.17 -37.53 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.84 Total: 11.27 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -3.83 Total: -19.91 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.76 Total: -37.29 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.25 Total: -11.23 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.36 -8.17 -37.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.530 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds