Wall clock time and date at job start Tue Mar 31 2020 15:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47132 * 2 1 4 4 H 1.08997 * 109.46766 * 305.00280 * 3 2 1 5 5 N 1.46496 * 109.46969 * 65.00297 * 3 2 1 6 6 C 1.34770 * 120.00327 * 268.05560 * 5 3 2 7 7 O 1.21620 * 119.99754 * 0.02562 * 6 5 3 8 8 C 1.47432 * 120.00483 * 180.02562 * 6 5 3 9 9 C 1.39223 * 120.28125 * 354.32063 * 8 6 5 10 10 C 1.38219 * 120.09378 * 179.97438 * 9 8 6 11 11 C 1.38826 * 120.67612 * 0.02562 * 10 9 8 12 12 C 1.37599 * 120.56667 * 359.97438 * 11 10 9 13 13 C 1.40700 * 119.88413 * 359.73783 * 12 11 10 14 14 C 1.40898 * 120.32786 * 180.25600 * 13 12 11 15 15 H 1.07993 * 119.99598 * 145.38881 * 14 13 12 16 16 C 1.40267 * 119.99957 * 325.38322 * 14 13 12 17 17 N 1.30629 * 120.00407 * 349.71310 * 16 14 13 18 18 Si 1.86802 * 119.99809 * 169.70519 * 16 14 13 19 19 H 1.48503 * 109.47034 * 90.00398 * 18 16 14 20 20 H 1.48502 * 109.47137 * 210.00296 * 18 16 14 21 21 H 1.48495 * 109.47216 * 330.00473 * 18 16 14 22 22 C 1.50706 * 109.46812 * 185.00423 * 3 2 1 23 23 C 1.41384 * 128.00340 * 288.53801 * 22 3 2 24 24 C 1.50700 * 126.80513 * 0.03924 * 23 22 3 25 25 N 1.30177 * 106.39206 * 179.89920 * 23 22 3 26 26 O 1.20927 * 111.60488 * 0.38951 * 25 23 22 27 27 C 1.34043 * 111.56459 * 359.74816 * 26 25 23 28 28 C 1.50707 * 126.77517 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.46426 * 299.99821 * 1 2 3 30 30 H 1.08993 * 109.47145 * 59.99527 * 1 2 3 31 31 H 1.09000 * 109.46806 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46838 * 240.00049 * 2 1 3 33 33 H 1.09002 * 109.46922 * 120.00524 * 2 1 3 34 34 H 0.97001 * 119.99858 * 88.05802 * 5 3 2 35 35 H 1.08003 * 119.95199 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.66197 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.71536 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.05587 * 180.02562 * 12 11 10 39 39 H 0.97001 * 120.00498 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.46964 * 95.61198 * 24 23 22 41 41 H 1.09002 * 109.47019 * 215.61695 * 24 23 22 42 42 H 1.09005 * 109.47134 * 335.61342 * 24 23 22 43 43 H 1.09001 * 109.46845 * 270.00012 * 28 27 26 44 44 H 1.09002 * 109.46933 * 29.99498 * 28 27 26 45 45 H 1.08996 * 109.47159 * 150.00090 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6526 2.0974 1.2518 6 6 0.4953 2.7844 1.3228 7 8 -0.2276 2.8603 0.3477 8 6 0.1055 3.4440 2.5824 9 6 0.8670 3.2640 3.7340 10 6 0.4984 3.8847 4.9127 11 6 -0.6302 4.6914 4.9655 12 6 -1.4027 4.8883 3.8439 13 6 -1.0459 4.2728 2.6300 14 6 -1.8271 4.4724 1.4746 15 1 -1.3546 4.5174 0.5045 16 6 -3.2184 4.6124 1.5843 17 7 -3.8129 4.3599 2.7198 18 14 -4.2214 5.1602 0.1066 19 1 -4.6520 3.9689 -0.6685 20 1 -5.4177 5.9081 0.5701 21 1 -3.3919 6.0389 -0.7564 22 6 3.5420 1.4442 -0.1239 23 6 4.4960 1.0605 0.8464 24 6 4.2152 0.5570 2.2388 25 7 5.6649 1.2254 0.2977 26 8 5.5711 1.6490 -0.8311 27 6 4.2906 1.8195 -1.1885 28 6 3.7838 2.3287 -2.5133 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 2.2290 2.0366 2.0296 35 1 1.7471 2.6386 3.7062 36 1 1.0939 3.7399 5.8020 37 1 -0.9042 5.1685 5.8948 38 1 -2.2787 5.5179 3.8942 39 1 -4.7750 4.4571 2.7958 40 1 4.2188 -0.5330 2.2385 41 1 4.9841 0.9228 2.9193 42 1 3.2396 0.9170 2.5655 43 1 3.6895 3.4139 -2.4734 44 1 4.4855 2.0538 -3.3008 45 1 2.8099 1.8869 -2.7239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601375176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:01 Heat of formation + Delta-G solvation = 18.540266 kcal Electronic energy + Delta-G solvation = -28507.622573 eV Core-core repulsion = 24685.166246 eV Total energy + Delta-G solvation = -3822.456327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.97284 -40.91589 -38.91714 -37.42491 -35.59481 -35.02527 -34.27264 -33.33017 -31.72002 -31.15748 -29.81216 -29.07295 -27.58256 -26.91573 -24.07570 -23.45979 -22.82392 -21.73021 -21.47008 -20.80010 -19.35282 -18.69405 -18.25588 -17.79027 -17.13242 -16.82441 -16.11686 -15.95668 -15.62274 -15.40055 -15.03985 -14.75413 -14.48201 -14.44371 -14.29078 -14.24861 -13.99762 -13.87342 -13.75643 -13.40113 -13.30125 -13.17898 -12.83617 -12.81294 -12.60462 -12.48909 -12.35436 -12.26286 -11.99904 -11.89044 -11.67486 -11.46643 -11.10584 -10.88456 -10.32845 -10.08670 -9.89345 -9.38330 -9.19897 -8.64798 -6.32088 0.41806 0.55436 1.03062 1.10031 1.36142 1.48482 1.51823 2.10470 2.22789 2.40811 2.47189 2.82856 3.17208 3.47982 3.72445 3.74680 3.86158 4.11496 4.24322 4.27991 4.34663 4.35356 4.50797 4.57258 4.60089 4.64229 4.66457 4.70768 4.77172 4.87218 4.93957 4.95403 5.01274 5.07402 5.11333 5.15750 5.25610 5.29052 5.36728 5.48180 5.63720 5.72789 5.84126 6.07093 6.12858 6.36013 6.66035 6.82268 6.94814 7.02788 7.24248 7.71572 8.33346 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.004070 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.140218 B = 6877.577849 C = 8002.799746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.230 3.770 4 H 0.087 0.913 5 N -0.725 5.725 6 C 0.568 3.432 7 O -0.561 6.561 8 C -0.279 4.279 9 C -0.058 4.058 10 C -0.237 4.237 11 C -0.094 4.094 12 C -0.177 4.177 13 C 0.118 3.882 14 C -0.452 4.452 15 H 0.085 0.915 16 C 0.034 3.966 17 N -0.824 5.824 18 Si 0.976 3.024 19 H -0.270 1.270 20 H -0.261 1.261 21 H -0.262 1.262 22 C -0.225 4.225 23 C 0.030 3.970 24 C -0.083 4.083 25 N -0.391 5.391 26 O 0.088 5.912 27 C -0.007 4.007 28 C -0.079 4.079 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.288 0.712 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.100 -6.868 -5.058 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.125 3.875 4 H 0.105 0.895 5 N -0.381 5.381 6 C 0.361 3.639 7 O -0.441 6.441 8 C -0.284 4.284 9 C -0.076 4.076 10 C -0.256 4.256 11 C -0.112 4.112 12 C -0.196 4.196 13 C 0.114 3.886 14 C -0.481 4.481 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.451 5.451 18 Si 0.798 3.202 19 H -0.195 1.195 20 H -0.185 1.185 21 H -0.186 1.186 22 C -0.229 4.229 23 C -0.130 4.130 24 C -0.141 4.141 25 N -0.099 5.099 26 O 0.026 5.974 27 C -0.071 4.071 28 C -0.136 4.136 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.238 0.762 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.128 0.872 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.618 -7.011 -5.248 15.359 hybrid contribution -1.310 0.361 0.006 1.359 sum 11.308 -6.649 -5.242 14.127 Atomic orbital electron populations 1.21650 0.95944 1.00902 1.01220 1.21868 0.95472 0.94835 1.03412 1.18957 0.85947 0.94233 0.88342 0.89480 1.46056 1.22577 1.55176 1.14335 1.18243 0.80366 0.77229 0.88080 1.90660 1.52343 1.62318 1.38815 1.19868 1.04834 1.09325 0.94347 1.21034 0.97204 0.97210 0.92174 1.20766 1.00679 1.05963 0.98192 1.21157 0.94991 0.97817 0.97247 1.21276 1.00849 1.03475 0.93998 1.17823 0.90187 0.87238 0.93341 1.20079 0.91998 1.40631 0.95427 0.89721 1.26752 0.99358 0.92237 0.99749 1.69748 1.12215 1.35643 1.27456 0.85291 0.77614 0.79046 0.78258 1.19515 1.18531 1.18596 1.21072 0.97081 1.09865 0.94923 1.23758 0.87943 1.01103 1.00161 1.20431 1.03153 1.02852 0.87628 1.73802 1.23678 1.18270 0.94198 1.84774 1.27359 1.61688 1.23544 1.24803 0.82867 0.99544 0.99934 1.20601 1.02638 1.02488 0.87851 0.95303 0.93617 0.91750 0.89461 0.90838 0.76215 0.85677 0.85214 0.86434 0.88449 0.90153 0.88176 0.89149 0.90187 0.88628 0.87238 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.73 71.98 0.63 -3.69 16 2 C -0.12 -2.94 5.59 30.60 0.17 -2.76 16 3 C 0.23 6.50 2.56 44.25 0.11 6.61 16 4 H 0.09 2.73 6.57 -2.39 -0.02 2.72 16 5 N -0.73 -24.00 4.73 -449.36 -2.12 -26.12 16 6 C 0.57 24.95 6.32 86.67 0.55 25.49 16 7 O -0.56 -28.02 11.65 -4.10 -0.05 -28.07 16 8 C -0.28 -13.24 5.92 -19.70 -0.12 -13.36 16 9 C -0.06 -2.28 9.52 22.50 0.21 -2.07 16 10 C -0.24 -9.19 10.03 22.41 0.22 -8.97 16 11 C -0.09 -4.03 10.01 22.26 0.22 -3.81 16 12 C -0.18 -9.01 8.62 22.72 0.20 -8.82 16 13 C 0.12 6.35 5.49 -21.11 -0.12 6.24 16 14 C -0.45 -25.32 7.64 23.41 0.18 -25.14 16 15 H 0.08 4.93 5.97 -2.91 -0.02 4.91 16 16 C 0.03 1.77 5.23 85.37 0.45 2.21 16 17 N -0.82 -43.64 11.23 21.88 0.25 -43.40 16 18 Si 0.98 40.83 29.57 68.60 2.03 42.85 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 C -0.22 -5.62 5.19 -19.73 -0.10 -5.72 16 23 C 0.03 0.73 7.19 43.58 0.31 1.04 16 24 C -0.08 -1.58 10.24 71.24 0.73 -0.85 16 25 N -0.39 -10.51 12.07 -49.54 -0.60 -11.11 16 26 O 0.09 2.19 11.20 71.60 0.80 2.99 16 27 C -0.01 -0.16 7.49 25.04 0.19 0.02 16 28 C -0.08 -1.18 10.12 71.24 0.72 -0.46 16 29 H 0.03 1.09 6.22 -2.39 -0.01 1.07 16 30 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 34 H 0.40 11.55 3.65 -92.71 -0.34 11.21 16 35 H 0.13 3.88 6.44 -2.91 -0.02 3.86 16 36 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 37 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 38 H 0.10 5.20 6.67 -2.91 -0.02 5.19 16 39 H 0.29 13.82 8.29 -92.71 -0.77 13.05 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.53 5.26 -2.38 -0.01 1.51 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.10 1.42 7.60 -2.39 -0.02 1.40 16 Total: -1.00 -67.11 365.49 5.56 -61.55 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.69 Total: 35.33 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 4.56 Total: -34.02 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.48 Total: -80.63 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.75 Total: -25.08 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -67.11 5.56 -61.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.087 kcal (2) G-P(sol) polarization free energy of solvation -67.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds