Wall clock time and date at job start Tue Mar 31 2020 16:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35502 * 116.99673 * 2 1 4 4 N 1.31388 * 119.94897 * 339.51625 * 3 2 1 5 5 C 1.33681 * 122.56771 * 180.27192 * 4 3 2 6 6 C 1.47921 * 119.24212 * 179.74127 * 5 4 3 7 7 O 1.21548 * 119.99853 * 199.09200 * 6 5 4 8 8 N 1.34776 * 120.00245 * 19.08465 * 6 5 4 9 9 C 1.46496 * 120.00185 * 158.71645 * 8 6 5 10 10 C 1.50700 * 109.47095 * 90.00428 * 9 8 6 11 11 H 1.07997 * 120.00198 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00059 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99843 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99957 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47084 * 89.99817 * 14 12 10 16 16 H 1.48501 * 109.46974 * 209.99387 * 14 12 10 17 17 H 1.48490 * 109.47332 * 329.99853 * 14 12 10 18 18 C 1.46508 * 119.99823 * 338.71878 * 8 6 5 19 19 C 1.53005 * 109.46958 * 310.11872 * 18 8 6 20 20 C 1.52998 * 109.47155 * 70.12072 * 18 8 6 21 21 C 1.38259 * 121.51407 * 359.45794 * 5 4 3 22 22 C 1.40695 * 118.65291 * 0.26165 * 21 5 4 23 23 C 1.40238 * 122.05467 * 179.97438 * 22 21 5 24 24 C 1.36309 * 119.47823 * 180.02562 * 23 22 21 25 25 C 1.39251 * 120.94901 * 0.03949 * 24 23 22 26 26 C 1.36365 * 121.05632 * 359.95490 * 25 24 23 27 27 C 1.40042 * 119.58856 * 0.02791 * 26 25 24 28 28 H 1.09003 * 109.47055 * 169.57394 * 1 2 3 29 29 H 1.09004 * 109.47118 * 289.56921 * 1 2 3 30 30 H 1.08991 * 109.47516 * 49.57155 * 1 2 3 31 31 H 1.09002 * 109.46817 * 209.99869 * 9 8 6 32 32 H 1.09000 * 109.46835 * 330.00024 * 9 8 6 33 33 H 0.96991 * 119.99938 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.46909 * 190.12643 * 18 8 6 35 35 H 1.09005 * 109.46995 * 53.68666 * 19 18 8 36 36 H 1.08995 * 109.47202 * 173.68619 * 19 18 8 37 37 H 1.08995 * 109.47401 * 293.69318 * 19 18 8 38 38 H 1.09000 * 109.47191 * 69.86974 * 20 18 8 39 39 H 1.09004 * 109.46702 * 189.87146 * 20 18 8 40 40 H 1.08997 * 109.47084 * 309.86637 * 20 18 8 41 41 H 1.07999 * 120.67640 * 180.23369 * 21 5 4 42 42 H 1.07995 * 120.25643 * 359.97438 * 23 22 21 43 43 H 1.08008 * 119.52963 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.47350 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.20278 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 7 1.3916 2.2759 -0.3984 5 6 1.9485 3.4909 -0.4248 6 6 1.1473 4.6430 -0.8926 7 8 1.7020 5.6625 -1.2534 8 7 -0.1978 4.5622 -0.9189 9 6 -1.0052 5.7846 -0.9210 10 6 -1.2552 6.2190 -2.3422 11 1 -0.8527 5.6425 -3.1619 12 6 -1.9971 7.3532 -2.5960 13 7 -2.4870 8.0556 -1.5979 14 14 -2.3065 7.8920 -4.3576 15 1 -3.5567 7.2636 -4.8551 16 1 -2.4419 9.3700 -4.4066 17 1 -1.1671 7.4707 -5.2115 18 6 -0.8525 3.2518 -0.9453 19 6 -0.2282 2.3919 -2.0462 20 6 -0.6674 2.5618 0.4076 21 6 3.2542 3.6964 -0.0194 22 6 4.0048 2.5920 0.4237 23 6 5.3347 2.7187 0.8502 24 6 6.0133 1.6130 1.2686 25 6 5.4051 0.3604 1.2777 26 6 4.1135 0.2025 0.8696 27 6 3.3851 1.3162 0.4334 28 1 -0.3633 -1.0107 -0.1860 29 1 -0.3633 0.3442 0.9683 30 1 -0.3634 0.6664 -0.7822 31 1 -1.9575 5.5918 -0.4271 32 1 -0.4726 6.5726 -0.3885 33 1 -3.0092 8.8531 -1.7764 34 1 -1.9163 3.3812 -1.1448 35 1 0.8526 2.3553 -1.9095 36 1 -0.6355 1.3823 -1.9935 37 1 -0.4568 2.8256 -3.0196 38 1 -1.2584 3.0793 1.1633 39 1 -0.9973 1.5255 0.3350 40 1 0.3855 2.5891 0.6883 41 1 3.6894 4.6846 -0.0428 42 1 5.8177 3.6846 0.8463 43 1 7.0377 1.7096 1.5969 44 1 5.9651 -0.4998 1.6137 45 1 3.6556 -0.7755 0.8820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:44 Heat of formation + Delta-G solvation = 93.727587 kcal Electronic energy + Delta-G solvation = -29157.023701 eV Core-core repulsion = 25337.827741 eV Total energy + Delta-G solvation = -3819.195960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77847 -39.30973 -38.80017 -36.75189 -35.95270 -33.15313 -32.57659 -31.75658 -30.78334 -29.64649 -28.02271 -26.97522 -26.52567 -24.69202 -23.91980 -22.56852 -22.32340 -21.64932 -19.26402 -18.25913 -17.73003 -16.95649 -16.55007 -16.43081 -16.18405 -15.68004 -15.33174 -14.97547 -14.71857 -14.37595 -14.21669 -13.93970 -13.69625 -13.64587 -13.43568 -13.20707 -13.01929 -12.60300 -12.42712 -12.15917 -11.95519 -11.37901 -11.27133 -11.10234 -10.93621 -10.89954 -10.77632 -10.66045 -10.59147 -10.22077 -9.89023 -9.69040 -9.55391 -9.12773 -8.86294 -8.64441 -8.39121 -7.85169 -7.54547 -5.99630 -4.03203 0.25436 0.60701 1.77028 2.56892 2.94257 3.33897 3.40169 3.45772 3.53353 3.74387 3.99873 4.27626 4.47943 4.50876 4.65274 4.69595 4.78674 5.04705 5.12104 5.13844 5.20462 5.22824 5.34666 5.46356 5.49939 5.62825 5.69301 5.72356 5.73536 5.80182 5.90691 6.06097 6.17872 6.22975 6.28969 6.31034 6.38173 6.48553 6.62931 6.83057 6.86217 7.07520 7.15832 7.39493 7.55307 7.69449 7.97168 8.27137 8.43422 8.89035 9.05671 9.61202 11.08294 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.003725 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.462916 B = 7514.267586 C = 8451.503161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.301 6.301 3 C 0.303 3.697 4 N -0.452 5.452 5 C 0.077 3.923 6 C 0.561 3.439 7 O -0.519 6.519 8 N -0.582 5.582 9 C 0.250 3.750 10 C -0.518 4.518 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.158 3.842 19 C -0.174 4.174 20 C -0.209 4.209 21 C -0.117 4.117 22 C -0.017 4.017 23 C -0.105 4.105 24 C -0.100 4.100 25 C -0.126 4.126 26 C -0.076 4.076 27 C -0.091 4.091 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.152 0.848 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.866 -19.195 7.690 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.208 6.208 3 C 0.112 3.888 4 N -0.182 5.182 5 C -0.045 4.045 6 C 0.345 3.655 7 O -0.395 6.395 8 N -0.313 5.313 9 C 0.131 3.869 10 C -0.557 4.557 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.053 3.947 19 C -0.231 4.231 20 C -0.265 4.265 21 C -0.138 4.138 22 C -0.022 4.022 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.144 4.144 26 C -0.095 4.095 27 C -0.093 4.093 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.170 0.830 42 H 0.153 0.847 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.244 -18.651 7.255 22.955 hybrid contribution 0.144 0.482 -0.693 0.857 sum 11.388 -18.169 6.562 22.424 Atomic orbital electron populations 1.24378 0.77406 1.04182 1.03954 1.86118 1.22705 1.23535 1.88414 1.20049 0.89089 0.85625 0.94010 1.69100 1.34468 0.99392 1.15263 1.21074 0.92907 0.90836 0.99690 1.17637 0.82897 0.85569 0.79354 1.90785 1.71064 1.31373 1.46312 1.48177 1.04592 1.08397 1.70140 1.19334 0.89733 0.80232 0.97632 1.21438 1.32093 1.09784 0.92339 0.92289 1.24934 0.95749 0.96153 0.97383 1.69928 1.35884 1.17252 1.30716 0.86498 0.78419 0.77713 0.84826 1.20727 1.21162 1.19864 1.20772 0.96876 0.82502 0.94520 1.23091 1.04206 0.98056 0.97761 1.24081 1.03605 1.01166 0.97647 1.21996 0.93217 0.99754 0.98833 1.17947 0.94618 0.91617 0.98017 1.20981 0.92727 0.99666 0.98971 1.20976 1.00102 0.92539 0.98336 1.20928 0.95172 0.97647 1.00682 1.20941 0.94125 0.97962 0.96489 1.18125 0.93083 0.94609 1.03525 0.89160 0.91494 0.88014 0.94751 0.94492 0.92810 0.89969 0.88418 0.92398 0.93516 0.94466 0.90363 0.88159 0.83016 0.84677 0.85538 0.85632 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 8.91 101.05 0.90 0.85 16 2 O -0.30 -3.53 9.74 -18.20 -0.18 -3.70 16 3 C 0.30 4.09 7.11 -16.56 -0.12 3.97 16 4 N -0.45 -6.90 0.75 -9.60 -0.01 -6.90 16 5 C 0.08 1.35 5.30 -83.09 -0.44 0.91 16 6 C 0.56 12.38 6.76 -12.29 -0.08 12.29 16 7 O -0.52 -13.33 16.38 5.32 0.09 -13.24 16 8 N -0.58 -12.96 2.41 -168.54 -0.41 -13.36 16 9 C 0.25 6.63 4.99 -5.20 -0.03 6.61 16 10 C -0.52 -14.98 9.38 -34.44 -0.32 -15.30 16 11 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 14 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 18 C 0.16 2.82 3.25 -67.92 -0.22 2.60 16 19 C -0.17 -2.84 7.83 37.16 0.29 -2.54 16 20 C -0.21 -3.10 7.26 37.16 0.27 -2.83 16 21 C -0.12 -1.79 9.40 -38.65 -0.36 -2.15 16 22 C -0.02 -0.23 5.74 -106.84 -0.61 -0.84 16 23 C -0.11 -1.07 9.81 -39.53 -0.39 -1.46 16 24 C -0.10 -0.84 9.95 -39.90 -0.40 -1.24 16 25 C -0.13 -1.05 9.95 -39.88 -0.40 -1.45 16 26 C -0.08 -0.76 9.58 -39.58 -0.38 -1.14 16 27 C -0.09 -1.15 5.76 -106.66 -0.61 -1.76 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.61 6.32 -51.93 -0.33 0.29 16 30 H 0.10 1.10 2.20 -51.93 -0.11 0.98 16 31 H 0.03 0.92 8.01 -51.93 -0.42 0.51 16 32 H 0.04 1.08 7.79 -51.93 -0.40 0.68 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.08 1.52 7.90 -51.93 -0.41 1.11 16 35 H 0.10 1.68 3.93 -91.88 -0.36 1.32 16 36 H 0.06 0.75 5.56 -51.93 -0.29 0.46 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.92 3.30 -51.93 -0.17 0.75 16 40 H 0.10 1.60 3.45 -108.03 -0.37 1.22 16 41 H 0.15 2.27 7.72 -52.49 -0.41 1.86 16 42 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.14 1.16 7.65 -52.49 -0.40 0.76 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -33.47 348.40 -8.29 -41.76 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.76 Total: 0.94 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.00 Total: -1.88 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.32 Total: -46.45 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.09 Total: -16.95 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.47 -8.29 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.484 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds