Wall clock time and date at job start Tue Mar 31 2020 16:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46890 * 2 1 4 4 N 1.46498 * 109.46960 * 119.99371 * 2 1 3 5 5 C 1.46496 * 120.00390 * 300.00289 * 4 2 1 6 6 C 1.50697 * 109.47450 * 269.99958 * 5 4 2 7 7 H 1.08002 * 119.99650 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00646 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99586 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00269 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47120 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46881 * 120.00283 * 10 8 6 13 13 H 1.48500 * 109.47118 * 240.00151 * 10 8 6 14 14 C 1.34780 * 120.00159 * 120.00437 * 4 2 1 15 15 O 1.21281 * 120.00583 * 180.02562 * 14 4 2 16 16 C 1.50703 * 119.99519 * 359.97438 * 14 4 2 17 17 C 1.50705 * 109.46936 * 180.02562 * 16 14 4 18 18 C 1.36323 * 120.05334 * 100.00232 * 17 16 14 19 19 C 1.40914 * 118.25907 * 179.97438 * 18 17 16 20 20 C 1.40368 * 121.29969 * 179.97438 * 19 18 17 21 21 C 1.36185 * 119.63389 * 180.02562 * 20 19 18 22 22 C 1.39308 * 120.85875 * 359.70832 * 21 20 19 23 23 C 1.36116 * 121.03966 * 0.58155 * 22 21 20 24 24 C 1.40552 * 119.75752 * 359.44484 * 23 22 21 25 25 N 1.33763 * 121.00089 * 180.22939 * 24 23 22 26 26 C 1.31556 * 121.26451 * 179.97438 * 25 24 23 27 27 O 1.35579 * 119.20586 * 180.02562 * 26 25 24 28 28 H 1.08993 * 109.47614 * 300.00308 * 1 2 3 29 29 H 1.09003 * 109.46792 * 60.00334 * 1 2 3 30 30 H 1.09003 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47614 * 239.99692 * 2 1 3 32 32 H 1.09007 * 109.47134 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46723 * 299.99241 * 3 2 1 34 34 H 1.08992 * 109.47504 * 59.99947 * 3 2 1 35 35 H 1.09001 * 109.47124 * 29.99635 * 5 4 2 36 36 H 1.09004 * 109.47373 * 149.99879 * 5 4 2 37 37 H 0.96998 * 119.99618 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.47110 * 60.00143 * 16 14 4 39 39 H 1.08997 * 109.47341 * 300.00130 * 16 14 4 40 40 H 1.08002 * 120.87705 * 359.95385 * 18 17 16 41 41 H 1.08004 * 120.18165 * 0.04860 * 20 19 18 42 42 H 1.08005 * 119.56980 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.48042 * 180.30625 * 22 21 20 44 44 H 1.08002 * 120.12395 * 179.72832 * 23 22 21 45 45 H 0.96701 * 113.99726 * 270.01784 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6643 -0.1899 2.5268 6 6 2.7030 0.8020 2.9831 7 1 3.5430 1.0359 2.3458 8 6 2.5810 1.4111 4.2140 9 7 1.5583 1.1259 4.9902 10 14 3.8689 2.6401 4.7798 11 1 4.9102 2.7840 3.7310 12 1 3.2248 3.9562 5.0210 13 1 4.4951 2.1576 6.0369 14 6 2.7932 -1.7863 1.0728 15 8 3.1971 -2.3582 2.0630 16 6 3.1568 -2.3015 -0.2960 17 6 4.0229 -3.5271 -0.1576 18 6 3.4771 -4.7683 -0.2987 19 6 4.3216 -5.8880 -0.1622 20 6 3.8270 -7.1949 -0.2945 21 6 4.6735 -8.2526 -0.1555 22 6 6.0266 -8.0547 0.1105 23 6 6.5383 -6.8012 0.2505 24 6 5.6958 -5.6845 0.1143 25 7 6.1732 -4.4416 0.2424 26 6 5.3894 -3.3927 0.1155 27 8 5.9176 -2.1516 0.2531 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.6903 0.2976 2.4843 36 1 1.6237 -1.0224 3.2292 37 1 1.4727 1.5541 5.8563 38 1 3.7016 -1.5309 -0.8414 39 1 2.2484 -2.5587 -0.8406 40 1 2.4248 -4.8904 -0.5091 41 1 2.7808 -7.3608 -0.5056 42 1 4.2919 -9.2578 -0.2578 43 1 6.6789 -8.9095 0.2116 44 1 7.5889 -6.6651 0.4610 45 1 5.8998 -1.8148 1.1594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:33 Heat of formation + Delta-G solvation = -24.927258 kcal Electronic energy + Delta-G solvation = -28016.045399 eV Core-core repulsion = 24191.704179 eV Total energy + Delta-G solvation = -3824.341220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05902 -39.32316 -38.15476 -36.07361 -35.76369 -34.03415 -32.87429 -31.61583 -30.87626 -29.72279 -28.45605 -26.84472 -26.50177 -23.95537 -23.36935 -22.39688 -22.10575 -21.25360 -18.97755 -18.23785 -17.96248 -16.88018 -16.76573 -16.47244 -15.96941 -15.22737 -15.14665 -14.66057 -14.47593 -14.29739 -14.06544 -13.71467 -13.53451 -13.34924 -13.25956 -13.01444 -12.75306 -12.36838 -11.94051 -11.90323 -11.73570 -11.62450 -11.48644 -11.39145 -11.31977 -11.20386 -10.95155 -10.86298 -10.61816 -10.51991 -10.39850 -10.04827 -9.56392 -9.43091 -9.05950 -8.51311 -8.44759 -8.28320 -7.71202 -6.06332 -4.09803 0.34215 0.73727 1.94336 2.73273 3.27887 3.30873 3.36747 3.40507 3.66417 3.84704 4.09933 4.39983 4.44530 4.56436 4.69011 4.78861 4.93622 5.02465 5.06401 5.13853 5.24122 5.28898 5.29500 5.45224 5.53550 5.57322 5.62948 5.72314 5.88044 5.93340 5.98170 6.00223 6.12128 6.23471 6.26534 6.32340 6.34190 6.41177 6.56149 6.72015 6.93666 7.06769 7.42992 7.51696 7.59192 7.90340 7.93518 8.22034 8.37793 8.87241 9.03158 9.54688 11.01861 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.003368 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.675903 B = 8312.714431 C = 9050.331452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.589 5.589 5 C 0.246 3.754 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.509 3.491 15 O -0.542 6.542 16 C -0.102 4.102 17 C -0.115 4.115 18 C -0.042 4.042 19 C -0.110 4.110 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.102 4.102 23 C -0.096 4.096 24 C 0.148 3.852 25 N -0.500 5.500 26 C 0.371 3.629 27 O -0.484 6.484 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -12.787 -14.743 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.215 4.215 4 N -0.321 5.321 5 C 0.127 3.873 6 C -0.558 4.558 7 H 0.078 0.922 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.295 3.705 15 O -0.420 6.420 16 C -0.142 4.142 17 C -0.119 4.119 18 C -0.067 4.067 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.144 4.144 22 C -0.122 4.122 23 C -0.114 4.114 24 C 0.027 3.973 25 N -0.219 5.219 26 C 0.178 3.822 27 O -0.293 6.293 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.152 0.848 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.579 -12.969 -14.424 19.568 hybrid contribution -0.276 0.877 0.790 1.212 sum 2.302 -12.092 -13.634 18.369 Atomic orbital electron populations 1.22163 0.95559 1.01766 1.02551 1.21031 0.94122 0.94305 0.87843 1.22140 1.01492 0.95566 1.02341 1.48336 1.48865 1.26134 1.08780 1.19252 0.95962 0.94980 0.77111 1.21462 1.08918 1.23339 1.02075 0.92231 1.24930 0.95738 0.97118 0.96384 1.69939 1.29512 1.43290 1.10670 0.86502 0.81661 0.80827 0.78809 1.19744 1.21050 1.20987 1.20098 0.79463 0.81063 0.89871 1.90691 1.53656 1.58163 1.39499 1.20696 0.99730 0.95844 0.97962 1.20175 0.93761 0.95624 1.02299 1.21233 0.99686 0.90498 0.95300 1.18798 0.94344 0.94677 1.03347 1.20955 0.99936 0.91036 0.98822 1.20865 0.93675 0.99086 1.00817 1.20858 0.95555 0.96896 0.98908 1.20783 0.99909 0.90611 1.00146 1.18545 0.90767 0.90451 0.97576 1.67543 1.39156 0.98289 1.16885 1.19102 0.86610 0.84857 0.91679 1.84571 1.83538 1.26067 1.35120 0.91265 0.92202 0.92959 0.90694 0.92596 0.93224 0.90054 0.94775 0.94132 0.92841 0.87437 0.88365 0.84020 0.85279 0.85665 0.85439 0.84818 0.72662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.17 37.16 0.34 -1.88 16 2 C 0.13 2.00 3.17 -67.93 -0.22 1.78 16 3 C -0.16 -2.47 8.47 37.16 0.31 -2.15 16 4 N -0.59 -11.58 2.39 -167.48 -0.40 -11.98 16 5 C 0.25 6.07 4.59 -5.20 -0.02 6.05 16 6 C -0.52 -13.88 7.83 -34.44 -0.27 -14.15 16 7 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 10 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.51 9.84 7.66 -10.98 -0.08 9.75 16 15 O -0.54 -12.84 15.54 5.56 0.09 -12.75 16 16 C -0.10 -1.45 3.79 -29.03 -0.11 -1.56 16 17 C -0.11 -1.75 4.41 -104.65 -0.46 -2.21 16 18 C -0.04 -0.56 9.49 -39.26 -0.37 -0.93 16 19 C -0.11 -1.49 5.74 -106.78 -0.61 -2.10 16 20 C -0.09 -0.93 9.77 -39.52 -0.39 -1.32 16 21 C -0.13 -1.17 9.96 -39.92 -0.40 -1.56 16 22 C -0.10 -0.99 9.94 -39.95 -0.40 -1.38 16 23 C -0.10 -1.18 9.98 -39.47 -0.39 -1.57 16 24 C 0.15 2.24 6.60 -84.85 -0.56 1.68 16 25 N -0.50 -8.56 10.37 -11.05 -0.11 -8.67 16 26 C 0.37 6.26 7.60 -17.01 -0.13 6.13 16 27 O -0.48 -7.91 12.75 -18.43 -0.24 -8.14 16 28 H 0.07 1.10 6.66 -51.93 -0.35 0.75 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.92 5.76 -51.93 -0.30 0.62 16 32 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.52 6.92 -51.93 -0.36 1.16 16 35 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 36 H 0.04 1.16 7.42 -51.93 -0.39 0.77 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.11 1.43 7.48 -51.93 -0.39 1.04 16 39 H 0.10 1.10 7.65 -51.93 -0.40 0.70 16 40 H 0.14 1.46 8.04 -52.49 -0.42 1.04 16 41 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 45 H 0.41 6.23 9.06 45.56 0.41 6.64 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -33.82 375.01 -8.59 -42.41 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.44 Total: 6.19 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.86 Total: -3.87 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.22 Total: -45.87 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.15 Total: -20.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.82 -8.59 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.486 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds