Wall clock time and date at job start Tue Mar 31 2020 16:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46890 * 2 1 4 4 N 1.46498 * 109.46960 * 119.99371 * 2 1 3 5 5 C 1.46496 * 120.00390 * 300.00289 * 4 2 1 6 6 C 1.50697 * 109.47450 * 269.99958 * 5 4 2 7 7 H 1.08002 * 119.99650 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00646 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99586 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00269 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47120 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46881 * 120.00283 * 10 8 6 13 13 H 1.48500 * 109.47118 * 240.00151 * 10 8 6 14 14 C 1.34780 * 120.00159 * 120.00437 * 4 2 1 15 15 O 1.21281 * 120.00583 * 180.02562 * 14 4 2 16 16 C 1.50703 * 119.99519 * 359.97438 * 14 4 2 17 17 C 1.50705 * 109.46936 * 180.02562 * 16 14 4 18 18 C 1.36323 * 120.05334 * 100.00232 * 17 16 14 19 19 C 1.40914 * 118.25907 * 179.97438 * 18 17 16 20 20 C 1.40368 * 121.29969 * 179.97438 * 19 18 17 21 21 C 1.36185 * 119.63389 * 180.02562 * 20 19 18 22 22 C 1.39308 * 120.85875 * 359.70832 * 21 20 19 23 23 C 1.36116 * 121.03966 * 0.58155 * 22 21 20 24 24 C 1.40552 * 119.75752 * 359.44484 * 23 22 21 25 25 N 1.33763 * 121.00089 * 180.22939 * 24 23 22 26 26 C 1.31556 * 121.26451 * 179.97438 * 25 24 23 27 27 O 1.35579 * 119.20586 * 180.02562 * 26 25 24 28 28 H 1.08993 * 109.47614 * 300.00308 * 1 2 3 29 29 H 1.09003 * 109.46792 * 60.00334 * 1 2 3 30 30 H 1.09003 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47614 * 239.99692 * 2 1 3 32 32 H 1.09007 * 109.47134 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46723 * 299.99241 * 3 2 1 34 34 H 1.08992 * 109.47504 * 59.99947 * 3 2 1 35 35 H 1.09001 * 109.47124 * 29.99635 * 5 4 2 36 36 H 1.09004 * 109.47373 * 149.99879 * 5 4 2 37 37 H 0.96998 * 119.99618 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.47110 * 60.00143 * 16 14 4 39 39 H 1.08997 * 109.47341 * 300.00130 * 16 14 4 40 40 H 1.08002 * 120.87705 * 359.95385 * 18 17 16 41 41 H 1.08004 * 120.18165 * 0.04860 * 20 19 18 42 42 H 1.08005 * 119.56980 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.48042 * 180.30625 * 22 21 20 44 44 H 1.08002 * 120.12395 * 179.72832 * 23 22 21 45 45 H 0.96701 * 113.99726 * 270.01784 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6643 -0.1899 2.5268 6 6 2.7030 0.8020 2.9831 7 1 3.5430 1.0359 2.3458 8 6 2.5810 1.4111 4.2140 9 7 1.5583 1.1259 4.9902 10 14 3.8689 2.6401 4.7798 11 1 4.9102 2.7840 3.7310 12 1 3.2248 3.9562 5.0210 13 1 4.4951 2.1576 6.0369 14 6 2.7932 -1.7863 1.0728 15 8 3.1971 -2.3582 2.0630 16 6 3.1568 -2.3015 -0.2960 17 6 4.0229 -3.5271 -0.1576 18 6 3.4771 -4.7683 -0.2987 19 6 4.3216 -5.8880 -0.1622 20 6 3.8270 -7.1949 -0.2945 21 6 4.6735 -8.2526 -0.1555 22 6 6.0266 -8.0547 0.1105 23 6 6.5383 -6.8012 0.2505 24 6 5.6958 -5.6845 0.1143 25 7 6.1732 -4.4416 0.2424 26 6 5.3894 -3.3927 0.1155 27 8 5.9176 -2.1516 0.2531 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.6903 0.2976 2.4843 36 1 1.6237 -1.0224 3.2292 37 1 1.4727 1.5541 5.8563 38 1 3.7016 -1.5309 -0.8414 39 1 2.2484 -2.5587 -0.8406 40 1 2.4248 -4.8904 -0.5091 41 1 2.7808 -7.3608 -0.5056 42 1 4.2919 -9.2578 -0.2578 43 1 6.6789 -8.9095 0.2116 44 1 7.5889 -6.6651 0.4610 45 1 5.8998 -1.8148 1.1594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:31 Heat of formation + Delta-G solvation = -49.214213 kcal Electronic energy + Delta-G solvation = -28017.098560 eV Core-core repulsion = 24191.704179 eV Total energy + Delta-G solvation = -3825.394381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.10705 -40.74576 -39.25130 -37.54702 -36.83145 -35.20200 -34.82442 -32.66149 -32.38818 -30.65288 -29.97169 -28.20409 -27.84914 -25.18641 -24.82305 -23.69707 -23.07419 -22.56601 -20.06411 -19.67144 -18.99047 -18.58014 -18.23383 -17.83032 -17.06645 -16.84622 -16.31684 -16.11412 -15.81023 -15.37063 -15.18550 -14.81801 -14.80894 -14.61026 -14.40032 -14.31835 -14.05600 -13.85254 -13.33910 -13.19962 -13.02414 -12.96073 -12.82251 -12.74868 -12.52263 -12.43138 -12.33860 -12.27384 -12.17963 -12.07144 -11.64026 -11.51772 -11.48159 -10.61008 -10.59528 -10.50940 -9.54586 -9.39937 -9.20261 -8.18804 -6.29799 -0.60570 -0.26137 0.99201 1.35357 1.37967 1.48718 1.76222 1.84330 2.33561 2.47974 2.61932 3.09177 3.11829 3.40007 3.65859 3.70039 3.79555 3.88958 4.01814 4.09595 4.21204 4.32387 4.34379 4.42086 4.44932 4.46862 4.59545 4.80198 4.87015 4.90748 4.97841 5.01584 5.06765 5.08789 5.10221 5.16358 5.26979 5.41096 5.45891 5.47681 5.50560 5.60689 5.67150 5.90367 5.91632 6.13119 6.39204 6.76549 6.84133 6.86158 7.33068 7.51634 8.88546 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.003368 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.675903 B = 8312.714431 C = 9050.331452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 C -0.154 4.154 4 N -0.594 5.594 5 C 0.265 3.735 6 C -0.521 4.521 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.266 1.266 12 H -0.273 1.273 13 H -0.287 1.287 14 C 0.503 3.497 15 O -0.595 6.595 16 C -0.083 4.083 17 C -0.139 4.139 18 C -0.034 4.034 19 C -0.128 4.128 20 C -0.091 4.091 21 C -0.119 4.119 22 C -0.085 4.085 23 C -0.125 4.125 24 C 0.117 3.883 25 N -0.532 5.532 26 C 0.343 3.657 27 O -0.492 6.492 28 H 0.036 0.964 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.025 0.975 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.134 0.866 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -14.632 -17.498 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.211 4.211 4 N -0.325 5.325 5 C 0.144 3.856 6 C -0.560 4.560 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.190 1.190 12 H -0.198 1.198 13 H -0.213 1.213 14 C 0.292 3.708 15 O -0.477 6.477 16 C -0.123 4.123 17 C -0.142 4.142 18 C -0.059 4.059 19 C -0.130 4.130 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.105 4.105 23 C -0.143 4.143 24 C -0.004 4.004 25 N -0.251 5.251 26 C 0.149 3.851 27 O -0.301 6.301 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.010 0.990 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.194 0.806 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.180 0.820 44 H 0.151 0.849 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.849 -14.803 -17.236 22.796 hybrid contribution -0.039 1.235 1.619 2.036 sum 1.811 -13.568 -15.618 20.767 Atomic orbital electron populations 1.22128 0.94187 1.02438 1.02729 1.21448 0.95272 0.93979 0.87178 1.22090 1.00666 0.96015 1.02373 1.48344 1.49125 1.26698 1.08283 1.18626 0.95172 0.92551 0.79242 1.21706 1.08950 1.23271 1.02080 0.92599 1.25760 0.97678 0.99075 0.96668 1.70056 1.31307 1.44655 1.11107 0.85512 0.79286 0.78856 0.78064 1.19016 1.19837 1.21283 1.21024 0.78071 0.80169 0.91522 1.90662 1.55401 1.59704 1.41917 1.20621 1.01438 0.95757 0.94445 1.20229 0.93072 0.96752 1.04183 1.21691 1.01180 0.89733 0.93266 1.19125 0.93785 0.96388 1.03663 1.21362 1.01784 0.89794 0.98045 1.21384 0.93124 1.00651 0.98532 1.21327 0.96549 0.96694 0.95899 1.20983 1.00046 0.91197 1.02104 1.19063 0.92410 0.90328 0.98622 1.67470 1.40322 0.99363 1.17980 1.19413 0.87755 0.84687 0.93200 1.84540 1.83916 1.26578 1.35050 0.94477 0.88542 0.92071 0.86450 0.93817 0.89292 0.93840 0.95705 0.99046 0.92749 0.86187 0.84170 0.80597 0.82156 0.81756 0.82023 0.84854 0.72987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 9.17 71.98 0.66 -3.31 16 2 C 0.12 3.53 3.17 44.99 0.14 3.67 16 3 C -0.15 -4.63 8.47 71.98 0.61 -4.02 16 4 N -0.59 -23.59 2.39 -802.16 -1.91 -25.51 16 5 C 0.27 13.79 4.59 85.63 0.39 14.19 16 6 C -0.52 -29.03 7.83 25.60 0.20 -28.83 16 7 H 0.06 3.08 7.63 -2.91 -0.02 3.06 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 10 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 14 C 0.50 19.65 7.66 87.66 0.67 20.32 16 15 O -0.60 -29.55 15.54 -3.03 -0.05 -29.60 16 16 C -0.08 -2.22 3.79 29.10 0.11 -2.11 16 17 C -0.14 -4.17 4.41 -19.88 -0.09 -4.25 16 18 C -0.03 -0.84 9.49 22.48 0.21 -0.63 16 19 C -0.13 -3.29 5.74 -21.27 -0.12 -3.41 16 20 C -0.09 -1.60 9.77 22.31 0.22 -1.39 16 21 C -0.12 -1.69 9.96 22.05 0.22 -1.48 16 22 C -0.09 -1.39 9.94 22.03 0.22 -1.17 16 23 C -0.12 -3.00 9.98 22.34 0.22 -2.78 16 24 C 0.12 3.57 6.60 40.25 0.27 3.84 16 25 N -0.53 -19.12 10.37 -302.14 -3.13 -22.25 16 26 C 0.34 12.03 7.60 85.16 0.65 12.68 16 27 O -0.49 -17.08 12.75 -88.87 -1.13 -18.22 16 28 H 0.04 1.17 6.66 -2.39 -0.02 1.16 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.12 2.41 5.76 -2.39 -0.01 2.39 16 32 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.63 6.92 -2.39 -0.02 1.62 16 35 H 0.03 1.33 6.43 -2.39 -0.02 1.31 16 36 H -0.01 -0.53 7.42 -2.39 -0.02 -0.54 16 37 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.12 2.93 7.48 -2.39 -0.02 2.92 16 39 H 0.14 2.53 7.65 -2.39 -0.02 2.52 16 40 H 0.18 2.98 8.04 -2.91 -0.02 2.96 16 41 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 45 H 0.41 13.69 9.06 -74.06 -0.67 13.02 16 Total: -1.00 -81.05 375.01 1.48 -79.58 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.35 Total: 22.57 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.05 Total: 2.15 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -4.76 Total: -103.56 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.18 Total: -47.81 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -81.05 1.48 -79.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.362 kcal (2) G-P(sol) polarization free energy of solvation -81.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds