Wall clock time and date at job start Tue Mar 31 2020 15:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 H 1.08992 * 109.51374 * 55.09815 * 3 2 1 5 5 C 1.53711 * 109.48401 * 175.36199 * 3 2 1 6 6 N 1.47147 * 108.16233 * 172.39776 * 5 3 2 7 7 C 1.34779 * 120.98377 * 129.43176 * 6 5 3 8 8 O 1.21663 * 119.99876 * 7.21195 * 7 6 5 9 9 C 1.46892 * 120.00019 * 187.20807 * 7 6 5 10 10 C 1.36119 * 125.43539 * 27.67670 * 9 7 6 11 11 C 1.41704 * 107.74589 * 180.02562 * 10 9 7 12 12 C 1.40020 * 133.34988 * 179.97438 * 11 10 9 13 13 C 1.36572 * 119.83110 * 180.02562 * 12 11 10 14 14 C 1.38858 * 120.60250 * 359.69012 * 13 12 11 15 15 C 1.37843 * 120.62957 * 0.59933 * 14 13 12 16 16 C 1.39092 * 119.81220 * 359.43517 * 15 14 13 17 17 N 1.37841 * 133.16271 * 180.24807 * 16 15 14 18 18 C 1.36894 * 125.61988 * 0.02562 * 17 16 15 19 19 H 1.07998 * 119.99823 * 217.90521 * 18 17 16 20 20 C 1.39013 * 119.99948 * 37.90583 * 18 17 16 21 21 N 1.31351 * 119.99946 * 18.36570 * 20 18 17 22 22 Si 1.86796 * 119.99859 * 198.37107 * 20 18 17 23 23 H 1.48501 * 109.47119 * 5.00549 * 22 20 18 24 24 H 1.48501 * 109.47358 * 125.00511 * 22 20 18 25 25 H 1.48500 * 109.47054 * 245.00711 * 22 20 18 26 26 C 1.47155 * 118.03803 * 309.15813 * 6 5 3 27 27 C 1.53299 * 108.37980 * 50.78453 * 26 6 5 28 28 O 1.42959 * 109.22582 * 307.69459 * 27 26 6 29 29 H 1.08996 * 109.47140 * 300.00196 * 1 2 3 30 30 H 1.09005 * 109.47229 * 60.00027 * 1 2 3 31 31 H 1.08995 * 109.46733 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47140 * 239.99804 * 2 1 3 33 33 H 1.08991 * 109.47117 * 119.99784 * 2 1 3 34 34 H 1.09010 * 109.83991 * 52.71594 * 5 3 2 35 35 H 1.08995 * 109.74602 * 292.02553 * 5 3 2 36 36 H 1.07999 * 126.13158 * 359.97438 * 10 9 7 37 37 H 1.08007 * 120.08041 * 0.06174 * 12 11 10 38 38 H 1.07998 * 119.69980 * 180.02562 * 13 12 11 39 39 H 1.07996 * 119.68739 * 180.29108 * 14 13 12 40 40 H 1.07997 * 120.09696 * 179.70256 * 15 14 13 41 41 H 0.97001 * 119.99366 * 174.95493 * 21 20 18 42 42 H 1.08996 * 109.68740 * 170.50916 * 26 6 5 43 43 H 1.08998 * 109.68064 * 291.06822 * 26 6 5 44 44 H 1.08993 * 109.51188 * 67.62689 * 27 26 6 45 45 H 1.09008 * 109.51147 * 187.72507 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6072 1.9817 0.8425 5 6 3.5726 1.4445 0.1172 6 7 4.0451 2.8255 -0.0696 7 6 4.8934 3.3936 0.8103 8 8 5.3826 2.7255 1.7017 9 6 5.2274 4.8192 0.6930 10 6 4.4250 5.7757 0.1506 11 6 5.1134 7.0119 0.2283 12 6 4.7920 8.3172 -0.1633 13 6 5.6845 9.3291 0.0484 14 6 6.9078 9.0774 0.6552 15 6 7.2491 7.7998 1.0440 16 6 6.3569 6.7527 0.8384 17 7 6.4068 5.4033 1.1149 18 6 7.4519 4.7495 1.7103 19 1 7.7266 3.7582 1.3812 20 6 8.1596 5.3616 2.7384 21 7 7.6341 6.3785 3.3827 22 14 9.8578 4.7380 3.2035 23 1 10.2704 3.6718 2.2557 24 1 10.8306 5.8584 3.1420 25 1 9.8227 4.1881 4.5824 26 6 3.5690 3.5660 -1.2488 27 6 2.0407 3.4587 -1.3022 28 8 1.6622 2.0825 -1.2214 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 4.0032 0.8021 -0.6510 35 1 3.8670 1.0861 1.1035 36 1 3.4405 5.6202 -0.2654 37 1 3.8406 8.5234 -0.6310 38 1 5.4342 10.3352 -0.2541 39 1 7.6004 9.8895 0.8197 40 1 8.2049 7.6129 1.5109 41 1 8.0949 6.7588 4.1468 42 1 3.8609 4.6130 -1.1674 43 1 3.9991 3.1335 -2.1521 44 1 1.6079 4.0053 -0.4644 45 1 1.6786 3.8822 -2.2391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609162856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:27 Heat of formation + Delta-G solvation = -3.052447 kcal Electronic energy + Delta-G solvation = -28612.558564 eV Core-core repulsion = 24789.165907 eV Total energy + Delta-G solvation = -3823.392657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.73909 -39.63221 -37.86602 -35.85376 -34.81115 -33.95877 -33.57186 -30.90116 -30.10649 -29.01648 -28.51565 -27.23834 -25.05617 -24.20527 -23.30939 -22.01700 -21.09180 -20.68920 -20.05417 -18.94157 -17.78077 -16.67882 -16.49843 -15.98246 -15.47052 -15.27413 -15.08894 -14.82643 -14.63448 -14.42095 -13.95251 -13.83310 -13.65419 -13.28406 -13.14543 -12.90709 -12.61426 -12.46057 -12.34974 -11.96454 -11.82114 -11.52043 -11.36614 -11.30196 -11.14661 -11.09748 -11.04980 -10.75895 -10.58249 -10.44569 -10.28974 -10.00806 -9.79611 -9.19139 -9.11551 -8.65635 -8.25375 -7.16767 -6.83804 -6.61291 -4.42621 1.82143 2.74121 2.99229 3.02125 3.06788 3.10471 3.15249 3.70661 3.83215 4.09530 4.57902 4.63083 4.71762 4.87899 4.98878 5.05835 5.06539 5.17465 5.24297 5.29847 5.47776 5.53733 5.67443 5.69473 5.79088 5.81769 5.82752 5.92061 5.93569 5.97704 6.05796 6.11667 6.18825 6.27398 6.53026 6.61663 6.74903 6.87107 6.98345 7.06221 7.15610 7.16407 7.44642 7.55498 7.64385 7.71649 7.93456 8.04837 8.38809 8.67389 8.87560 9.28176 10.20488 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.004224 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.458758 B = 6627.440689 C = 8392.189688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.063 0.937 5 C 0.089 3.911 6 N -0.615 5.615 7 C 0.593 3.407 8 O -0.525 6.525 9 C -0.019 4.019 10 C -0.225 4.225 11 C -0.120 4.120 12 C -0.095 4.095 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.046 4.046 16 C 0.083 3.917 17 N -0.226 5.226 18 C -0.338 4.338 19 H 0.110 0.890 20 C 0.054 3.946 21 N -0.818 5.818 22 Si 0.932 3.068 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.038 3.962 27 C 0.049 3.951 28 O -0.378 6.378 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.282 0.718 42 H 0.139 0.861 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -4.511 -7.507 12.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.019 3.981 4 H 0.081 0.919 5 C -0.034 4.034 6 N -0.351 5.351 7 C 0.384 3.616 8 O -0.401 6.401 9 C -0.138 4.138 10 C -0.251 4.251 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.172 4.172 14 C -0.176 4.176 15 C -0.066 4.066 16 C -0.031 4.031 17 N 0.114 4.886 18 C -0.466 4.466 19 H 0.128 0.872 20 C -0.159 4.159 21 N -0.447 5.447 22 Si 0.756 3.244 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.084 4.084 27 C -0.029 4.029 28 O -0.297 6.297 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.154 0.846 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.156 0.844 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.171 -5.002 -6.820 11.760 hybrid contribution 0.808 -0.067 0.686 1.062 sum -7.363 -5.070 -6.133 10.841 Atomic orbital electron populations 1.21696 0.95093 1.01411 1.02323 1.21499 0.96806 0.93951 1.02955 1.22625 0.93471 0.94431 0.87548 0.91914 1.22273 0.93792 0.83525 1.03831 1.47776 1.48332 1.13789 1.25209 1.17341 0.77689 0.85841 0.80768 1.90778 1.51453 1.63873 1.33956 1.19544 0.89727 0.92261 1.12245 1.20393 1.00222 0.91423 1.13104 1.17932 0.95565 0.93371 1.05568 1.20004 0.98453 0.91293 1.01628 1.20275 0.95280 0.97695 1.03959 1.20540 0.97478 0.95487 1.04117 1.20136 0.98745 0.90421 0.97258 1.18122 0.96803 0.84879 1.03299 1.39953 1.09311 1.04557 1.34802 1.19843 1.06238 1.02807 1.17712 0.87210 1.25639 1.00301 0.95379 0.94576 1.69985 1.37309 1.21291 1.16119 0.85788 0.80182 0.79256 0.79216 1.18472 1.19698 1.19764 1.23296 0.94731 1.02280 0.88129 1.22973 0.94231 0.82967 1.02693 1.87899 1.79795 1.23940 1.38081 0.92913 0.91931 0.92798 0.90933 0.90364 0.91160 0.88425 0.84601 0.87859 0.87972 0.87721 0.86820 0.90741 0.84403 0.91344 0.92600 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.81 37.16 0.36 -0.97 16 2 C -0.11 -1.13 5.65 -26.73 -0.15 -1.28 16 3 C 0.08 0.97 2.79 -26.36 -0.07 0.90 16 4 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.09 1.31 5.93 -3.32 -0.02 1.29 16 6 N -0.62 -10.70 3.01 -173.48 -0.52 -11.22 16 7 C 0.59 13.26 7.48 -12.76 -0.10 13.16 16 8 O -0.53 -13.42 15.32 5.22 0.08 -13.34 16 9 C -0.02 -0.46 6.39 -82.25 -0.53 -0.99 16 10 C -0.22 -4.71 8.55 -39.02 -0.33 -5.05 16 11 C -0.12 -2.71 6.16 -106.89 -0.66 -3.37 16 12 C -0.09 -1.86 10.06 -39.52 -0.40 -2.26 16 13 C -0.15 -2.89 9.97 -39.95 -0.40 -3.29 16 14 C -0.16 -3.17 10.02 -39.50 -0.40 -3.57 16 15 C -0.05 -1.09 8.55 -39.41 -0.34 -1.43 16 16 C 0.08 2.10 6.09 -83.83 -0.51 1.59 16 17 N -0.23 -5.99 2.83 -56.08 -0.16 -6.15 16 18 C -0.34 -9.15 8.74 -15.00 -0.13 -9.28 16 19 H 0.11 3.01 7.62 -52.49 -0.40 2.61 16 20 C 0.05 1.39 4.41 -17.47 -0.08 1.31 16 21 N -0.82 -21.71 10.88 55.50 0.60 -21.11 16 22 Si 0.93 19.64 29.59 -169.99 -5.03 14.61 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 C 0.04 0.54 6.00 -3.53 -0.02 0.52 16 27 C 0.05 0.58 6.89 37.31 0.26 0.84 16 28 O -0.38 -4.87 9.92 -35.23 -0.35 -5.22 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.10 1.54 7.14 -51.93 -0.37 1.17 16 36 H 0.14 2.32 5.91 -52.49 -0.31 2.01 16 37 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.11 2.78 6.40 -52.49 -0.34 2.45 16 41 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.14 2.09 3.18 -51.93 -0.17 1.93 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -31.09 360.21 -9.65 -40.74 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.20 Total: 8.13 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -3.50 Total: -11.87 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.08 Total: -38.48 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.27 Total: -18.56 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.09 -9.65 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609162856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.691 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds