Wall clock time and date at job start Tue Mar 31 2020 15:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 H 1.08992 * 109.51374 * 55.09815 * 3 2 1 5 5 C 1.53711 * 109.48401 * 175.36199 * 3 2 1 6 6 N 1.47147 * 108.16233 * 172.39776 * 5 3 2 7 7 C 1.34779 * 120.98377 * 129.43176 * 6 5 3 8 8 O 1.21663 * 119.99876 * 7.21195 * 7 6 5 9 9 C 1.46892 * 120.00019 * 187.20807 * 7 6 5 10 10 C 1.36119 * 125.43539 * 27.67670 * 9 7 6 11 11 C 1.41704 * 107.74589 * 180.02562 * 10 9 7 12 12 C 1.40020 * 133.34988 * 179.97438 * 11 10 9 13 13 C 1.36572 * 119.83110 * 180.02562 * 12 11 10 14 14 C 1.38858 * 120.60250 * 359.69012 * 13 12 11 15 15 C 1.37843 * 120.62957 * 0.59933 * 14 13 12 16 16 C 1.39092 * 119.81220 * 359.43517 * 15 14 13 17 17 N 1.37841 * 133.16271 * 180.24807 * 16 15 14 18 18 C 1.36894 * 125.61988 * 0.02562 * 17 16 15 19 19 H 1.07998 * 119.99823 * 217.90521 * 18 17 16 20 20 C 1.39013 * 119.99948 * 37.90583 * 18 17 16 21 21 N 1.31351 * 119.99946 * 18.36570 * 20 18 17 22 22 Si 1.86796 * 119.99859 * 198.37107 * 20 18 17 23 23 H 1.48501 * 109.47119 * 5.00549 * 22 20 18 24 24 H 1.48501 * 109.47358 * 125.00511 * 22 20 18 25 25 H 1.48500 * 109.47054 * 245.00711 * 22 20 18 26 26 C 1.47155 * 118.03803 * 309.15813 * 6 5 3 27 27 C 1.53299 * 108.37980 * 50.78453 * 26 6 5 28 28 O 1.42959 * 109.22582 * 307.69459 * 27 26 6 29 29 H 1.08996 * 109.47140 * 300.00196 * 1 2 3 30 30 H 1.09005 * 109.47229 * 60.00027 * 1 2 3 31 31 H 1.08995 * 109.46733 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47140 * 239.99804 * 2 1 3 33 33 H 1.08991 * 109.47117 * 119.99784 * 2 1 3 34 34 H 1.09010 * 109.83991 * 52.71594 * 5 3 2 35 35 H 1.08995 * 109.74602 * 292.02553 * 5 3 2 36 36 H 1.07999 * 126.13158 * 359.97438 * 10 9 7 37 37 H 1.08007 * 120.08041 * 0.06174 * 12 11 10 38 38 H 1.07998 * 119.69980 * 180.02562 * 13 12 11 39 39 H 1.07996 * 119.68739 * 180.29108 * 14 13 12 40 40 H 1.07997 * 120.09696 * 179.70256 * 15 14 13 41 41 H 0.97001 * 119.99366 * 174.95493 * 21 20 18 42 42 H 1.08996 * 109.68740 * 170.50916 * 26 6 5 43 43 H 1.08998 * 109.68064 * 291.06822 * 26 6 5 44 44 H 1.08993 * 109.51188 * 67.62689 * 27 26 6 45 45 H 1.09008 * 109.51147 * 187.72507 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6072 1.9817 0.8425 5 6 3.5726 1.4445 0.1172 6 7 4.0451 2.8255 -0.0696 7 6 4.8934 3.3936 0.8103 8 8 5.3826 2.7255 1.7017 9 6 5.2274 4.8192 0.6930 10 6 4.4250 5.7757 0.1506 11 6 5.1134 7.0119 0.2283 12 6 4.7920 8.3172 -0.1633 13 6 5.6845 9.3291 0.0484 14 6 6.9078 9.0774 0.6552 15 6 7.2491 7.7998 1.0440 16 6 6.3569 6.7527 0.8384 17 7 6.4068 5.4033 1.1149 18 6 7.4519 4.7495 1.7103 19 1 7.7266 3.7582 1.3812 20 6 8.1596 5.3616 2.7384 21 7 7.6341 6.3785 3.3827 22 14 9.8578 4.7380 3.2035 23 1 10.2704 3.6718 2.2557 24 1 10.8306 5.8584 3.1420 25 1 9.8227 4.1881 4.5824 26 6 3.5690 3.5660 -1.2488 27 6 2.0407 3.4587 -1.3022 28 8 1.6622 2.0825 -1.2214 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 4.0032 0.8021 -0.6510 35 1 3.8670 1.0861 1.1035 36 1 3.4405 5.6202 -0.2654 37 1 3.8406 8.5234 -0.6310 38 1 5.4342 10.3352 -0.2541 39 1 7.6004 9.8895 0.8197 40 1 8.2049 7.6129 1.5109 41 1 8.0949 6.7588 4.1468 42 1 3.8609 4.6130 -1.1674 43 1 3.9991 3.1335 -2.1521 44 1 1.6079 4.0053 -0.4644 45 1 1.6786 3.8822 -2.2391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609162856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:26 Heat of formation + Delta-G solvation = -20.922829 kcal Electronic energy + Delta-G solvation = -28613.333482 eV Core-core repulsion = 24789.165907 eV Total energy + Delta-G solvation = -3824.167575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.39214 -40.99351 -39.32782 -37.50869 -36.24252 -35.32613 -34.93360 -32.59591 -31.25804 -30.69676 -30.02967 -28.55463 -26.87471 -25.40409 -24.65132 -23.31303 -22.55479 -21.92376 -21.70438 -20.49675 -19.49572 -18.09179 -17.80406 -17.45404 -17.14410 -16.66197 -16.62325 -16.27819 -15.90183 -15.79527 -15.45646 -15.22136 -14.83175 -14.64528 -14.59620 -14.37264 -14.10469 -13.98879 -13.78803 -13.56163 -13.18060 -12.96176 -12.87760 -12.59404 -12.46349 -12.35030 -12.17805 -12.03049 -11.97997 -11.87626 -11.60717 -11.46171 -11.16419 -10.97717 -10.79879 -10.37184 -9.62297 -8.94753 -8.63611 -8.35813 -6.39186 0.14072 1.08769 1.26650 1.31362 1.36580 1.42793 1.70204 2.09539 2.34210 2.73485 2.81928 2.98469 3.36869 3.58333 3.68912 3.94883 3.98674 4.05606 4.19549 4.22846 4.37046 4.41939 4.43825 4.45802 4.55355 4.61986 4.69758 4.73796 4.76810 4.84770 4.94088 4.98379 5.03364 5.07956 5.12107 5.18533 5.23382 5.33793 5.45168 5.45775 5.46097 5.70810 5.90460 5.97455 6.13878 6.15405 6.24383 6.38861 6.56700 6.91756 7.15633 7.43293 8.34188 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.004224 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.458758 B = 6627.440689 C = 8392.189688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.086 3.914 4 H 0.055 0.945 5 C 0.084 3.916 6 N -0.606 5.606 7 C 0.585 3.415 8 O -0.575 6.575 9 C -0.051 4.051 10 C -0.194 4.194 11 C -0.145 4.145 12 C -0.085 4.085 13 C -0.154 4.154 14 C -0.139 4.139 15 C -0.090 4.090 16 C 0.059 3.941 17 N -0.263 5.263 18 C -0.369 4.369 19 H 0.086 0.914 20 C 0.017 3.983 21 N -0.853 5.853 22 Si 0.994 3.006 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.268 1.268 26 C 0.034 3.966 27 C 0.053 3.947 28 O -0.379 6.379 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.179 0.821 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.284 0.716 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 -3.245 -9.613 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.027 3.973 4 H 0.073 0.927 5 C -0.038 4.038 6 N -0.340 5.340 7 C 0.376 3.624 8 O -0.455 6.455 9 C -0.167 4.167 10 C -0.221 4.221 11 C -0.149 4.149 12 C -0.103 4.103 13 C -0.172 4.172 14 C -0.159 4.159 15 C -0.110 4.110 16 C -0.055 4.055 17 N 0.075 4.925 18 C -0.497 4.497 19 H 0.104 0.896 20 C -0.192 4.192 21 N -0.483 5.483 22 Si 0.814 3.186 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.193 1.193 26 C -0.087 4.087 27 C -0.025 4.025 28 O -0.297 6.297 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.195 0.805 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.150 0.850 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.564 -3.748 -8.979 14.362 hybrid contribution 1.372 -0.359 1.171 1.839 sum -9.192 -4.107 -7.808 12.741 Atomic orbital electron populations 1.21666 0.94102 1.02399 1.01980 1.21527 0.97567 0.92112 1.03729 1.22600 0.91245 0.96077 0.87370 0.92732 1.22509 0.95793 0.82136 1.03385 1.47856 1.46521 1.14829 1.24745 1.17458 0.78252 0.85591 0.81098 1.90732 1.53661 1.64711 1.36352 1.20124 0.90256 0.93585 1.12755 1.20889 1.00919 0.90067 1.10245 1.18422 0.94857 0.95315 1.06335 1.20505 1.00129 0.89703 0.99998 1.20770 0.94027 0.99758 1.02663 1.20988 0.98615 0.94640 1.01640 1.20196 0.98572 0.91987 1.00243 1.18689 0.98389 0.84776 1.03680 1.40127 1.10155 1.05330 1.36853 1.19732 1.08157 1.02627 1.19188 0.89607 1.26432 1.03358 0.95489 0.93922 1.70055 1.38815 1.22658 1.16764 0.84907 0.76036 0.78971 0.78666 1.18717 1.18066 1.19328 1.23488 0.96803 1.01394 0.86995 1.23110 0.91909 0.82771 1.04662 1.87917 1.79478 1.24412 1.37940 0.93060 0.92425 0.91198 0.90268 0.89562 0.89865 0.90147 0.80454 0.83572 0.83430 0.85001 0.89094 0.90548 0.85255 0.90064 0.92530 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.81 71.98 0.71 -1.57 16 2 C -0.11 -2.00 5.65 30.60 0.17 -1.83 16 3 C 0.09 2.02 2.79 30.84 0.09 2.11 16 4 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 5 C 0.08 2.47 5.93 86.50 0.51 2.98 16 6 N -0.61 -21.14 3.01 -821.01 -2.47 -23.61 16 7 C 0.59 27.40 7.48 86.51 0.65 28.05 16 8 O -0.57 -31.53 15.32 -4.23 -0.06 -31.59 16 9 C -0.05 -2.50 6.39 39.91 0.25 -2.25 16 10 C -0.19 -8.00 8.55 22.63 0.19 -7.80 16 11 C -0.14 -6.39 6.16 -21.34 -0.13 -6.52 16 12 C -0.08 -3.00 10.06 22.31 0.22 -2.78 16 13 C -0.15 -5.18 9.97 22.03 0.22 -4.96 16 14 C -0.14 -5.42 10.02 22.32 0.22 -5.19 16 15 C -0.09 -4.39 8.55 22.38 0.19 -4.20 16 16 C 0.06 3.06 6.09 39.06 0.24 3.29 16 17 N -0.26 -14.70 2.83 -331.33 -0.94 -15.64 16 18 C -0.37 -21.58 8.74 84.09 0.73 -20.84 16 19 H 0.09 5.19 7.62 -2.91 -0.02 5.17 16 20 C 0.02 0.92 4.41 84.95 0.37 1.30 16 21 N -0.85 -47.87 10.88 21.67 0.24 -47.64 16 22 Si 0.99 42.67 29.59 68.60 2.03 44.70 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 C 0.03 0.91 6.00 86.35 0.52 1.43 16 27 C 0.05 1.08 6.89 72.08 0.50 1.57 16 28 O -0.38 -8.68 9.92 -148.98 -1.48 -10.15 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.97 7.82 -2.38 -0.02 0.95 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.08 2.66 7.14 -2.39 -0.02 2.64 16 36 H 0.18 5.54 5.91 -2.91 -0.02 5.52 16 37 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 38 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.09 4.73 6.40 -2.91 -0.02 4.71 16 41 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.13 3.66 3.18 -2.39 -0.01 3.65 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -74.24 360.21 3.98 -70.26 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 1.00 Total: 30.89 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 5.66 Total: -17.21 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -3.18 Total: -86.89 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.54 Total: -41.75 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -74.24 3.98 -70.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609162856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.340 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds