Wall clock time and date at job start Tue Mar 31 2020 15:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47132 * 2 1 4 4 H 1.09001 * 109.70761 * 63.16542 * 3 2 1 5 5 C 1.52875 * 109.62175 * 302.86294 * 3 2 1 6 6 O 1.42965 * 109.30244 * 188.10926 * 5 3 2 7 7 C 1.42965 * 114.16281 * 62.45102 * 6 5 3 8 8 C 1.53301 * 109.22116 * 297.42020 * 7 6 5 9 9 N 1.47150 * 108.38539 * 52.30172 * 8 7 6 10 10 C 1.34777 * 120.98271 * 129.44109 * 9 8 7 11 11 O 1.21664 * 120.00437 * 186.18109 * 10 9 8 12 12 C 1.46885 * 119.99713 * 6.18463 * 10 9 8 13 13 C 1.36120 * 125.43957 * 21.07409 * 12 10 9 14 14 C 1.41702 * 107.75211 * 179.97438 * 13 12 10 15 15 C 1.40021 * 133.35039 * 180.02562 * 14 13 12 16 16 C 1.36572 * 119.83024 * 180.02562 * 15 14 13 17 17 C 1.38852 * 120.60207 * 0.02562 * 16 15 14 18 18 C 1.37851 * 120.63468 * 359.97438 * 17 16 15 19 19 C 1.39088 * 119.80834 * 359.97438 * 18 17 16 20 20 N 1.37840 * 133.16193 * 179.97438 * 19 18 17 21 21 C 1.36893 * 125.62009 * 359.97438 * 20 19 18 22 22 H 1.07993 * 120.00310 * 130.96598 * 21 20 19 23 23 C 1.39015 * 119.99606 * 310.96226 * 21 20 19 24 24 N 1.31347 * 119.99983 * 178.49380 * 23 21 20 25 25 Si 1.86800 * 120.00024 * 358.49173 * 23 21 20 26 26 H 1.48503 * 109.46946 * 96.33357 * 25 23 21 27 27 H 1.48498 * 109.46900 * 216.33077 * 25 23 21 28 28 H 1.48500 * 109.47466 * 336.33297 * 25 23 21 29 29 H 1.09010 * 109.46846 * 185.55062 * 1 2 3 30 30 H 1.09001 * 109.47021 * 305.54729 * 1 2 3 31 31 H 1.08998 * 109.47663 * 65.54865 * 1 2 3 32 32 H 1.09002 * 109.46865 * 240.00209 * 2 1 3 33 33 H 1.09001 * 109.47442 * 120.00449 * 2 1 3 34 34 H 1.09008 * 109.58305 * 68.09929 * 5 3 2 35 35 H 1.09003 * 109.41171 * 308.02032 * 5 3 2 36 36 H 1.08999 * 109.51256 * 177.49405 * 7 6 5 37 37 H 1.09004 * 109.55489 * 57.36762 * 7 6 5 38 38 H 1.09000 * 109.67910 * 292.57953 * 8 7 6 39 39 H 1.08997 * 109.67935 * 172.02869 * 8 7 6 40 40 H 1.08005 * 126.12739 * 0.03629 * 13 12 10 41 41 H 1.08001 * 120.08445 * 0.05995 * 15 14 13 42 42 H 1.07999 * 119.70068 * 179.97438 * 16 15 14 43 43 H 1.08001 * 119.68519 * 179.97438 * 17 16 15 44 44 H 1.07996 * 120.09677 * 179.71752 * 18 17 16 45 45 H 0.96995 * 120.00130 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7257 1.9434 0.9157 5 6 1.4744 2.1869 -1.2095 6 8 2.0992 3.4689 -1.3099 7 6 3.5112 3.4163 -1.5274 8 6 4.1815 2.7356 -0.3284 9 7 3.5087 1.4489 -0.0894 10 6 4.2165 0.3091 0.0383 11 8 3.6399 -0.7589 0.1229 12 6 5.6842 0.3563 0.0753 13 6 6.4310 1.4488 0.3940 14 6 7.7961 1.0777 0.3126 15 6 8.9946 1.7693 0.5268 16 6 10.1884 1.1259 0.3656 17 6 10.2261 -0.2104 -0.0100 18 6 9.0597 -0.9123 -0.2267 19 6 7.8318 -0.2787 -0.0677 20 7 6.5274 -0.7016 -0.2082 21 6 6.1322 -1.9610 -0.5709 22 1 5.3784 -2.4773 0.0050 23 6 6.7012 -2.5755 -1.6805 24 7 6.3436 -3.7953 -2.0111 25 14 7.9743 -1.6663 -2.7012 26 1 9.3362 -2.0623 -2.2612 27 1 7.7974 -2.0112 -4.1347 28 1 7.8013 -0.2026 -2.5193 29 1 -0.3633 -1.0230 0.0994 30 1 -0.3633 0.5975 0.8362 31 1 -0.3634 0.4253 -0.9354 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.3985 2.3147 -1.0896 35 1 1.6741 1.6127 -2.1143 36 1 3.9008 4.4284 -1.6361 37 1 3.7199 2.8466 -2.4330 38 1 4.0865 3.3690 0.5536 39 1 5.2357 2.5639 -0.5459 40 1 6.0511 2.4237 0.6619 41 1 8.9750 2.8087 0.8194 42 1 11.1115 1.6614 0.5310 43 1 11.1785 -0.7045 -0.1337 44 1 9.0992 -1.9501 -0.5230 45 1 6.7403 -4.2239 -2.7855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609657492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:26 Heat of formation + Delta-G solvation = 22.185299 kcal Electronic energy + Delta-G solvation = -29333.550619 eV Core-core repulsion = 25511.252353 eV Total energy + Delta-G solvation = -3822.298266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.12043 -39.98077 -37.87911 -36.25422 -34.75354 -34.44934 -33.29618 -31.45595 -29.78306 -29.31847 -28.67531 -27.07502 -25.26472 -24.56835 -23.42714 -22.03313 -21.50315 -20.77321 -20.04455 -18.98890 -18.03653 -16.64236 -16.35326 -16.13811 -15.76587 -15.59144 -15.34410 -14.94603 -14.73755 -14.45122 -14.10120 -13.95412 -13.39648 -13.30071 -13.24527 -13.10365 -12.83706 -12.70569 -12.44798 -12.25331 -12.07420 -11.75930 -11.43915 -11.27955 -11.16788 -10.91472 -10.82774 -10.68393 -10.48393 -10.46827 -10.20615 -10.01271 -9.94811 -9.36952 -8.76459 -8.63945 -8.23280 -7.38943 -7.01749 -6.78693 -4.58319 1.50799 2.40879 2.73156 2.97450 3.00410 3.12954 3.21078 3.79242 3.88677 3.99023 4.23227 4.53950 4.71744 4.75715 4.87631 5.01923 5.09079 5.21253 5.27858 5.37167 5.45652 5.53116 5.60434 5.61347 5.62127 5.70323 5.76576 5.78579 5.86295 5.91987 5.99319 6.12183 6.19932 6.32638 6.44826 6.47541 6.57244 6.61447 6.71979 6.90333 7.08009 7.12111 7.23529 7.28173 7.50199 7.54368 7.73037 7.87195 8.24261 8.67443 8.78015 9.03329 10.24151 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.005149 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.548541 B = 5436.811559 C = 6614.204224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.113 4.113 3 C 0.121 3.879 4 H 0.075 0.925 5 C 0.050 3.950 6 O -0.384 6.384 7 C 0.045 3.955 8 C 0.046 3.954 9 N -0.612 5.612 10 C 0.589 3.411 11 O -0.510 6.510 12 C -0.001 4.001 13 C -0.217 4.217 14 C -0.117 4.117 15 C -0.080 4.080 16 C -0.156 4.156 17 C -0.129 4.129 18 C -0.115 4.115 19 C 0.059 3.941 20 N -0.255 5.255 21 C -0.336 4.336 22 H 0.131 0.869 23 C 0.077 3.923 24 N -0.834 5.834 25 Si 0.878 3.122 26 H -0.253 1.253 27 H -0.286 1.286 28 H -0.249 1.249 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 12.530 1.363 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.151 4.151 3 C 0.018 3.982 4 H 0.093 0.907 5 C -0.027 4.027 6 O -0.303 6.303 7 C -0.032 4.032 8 C -0.077 4.077 9 N -0.348 5.348 10 C 0.379 3.621 11 O -0.385 6.385 12 C -0.118 4.118 13 C -0.244 4.244 14 C -0.122 4.122 15 C -0.098 4.098 16 C -0.176 4.176 17 C -0.149 4.149 18 C -0.134 4.134 19 C -0.054 4.054 20 N 0.083 4.917 21 C -0.464 4.464 22 H 0.148 0.852 23 C -0.136 4.136 24 N -0.464 5.464 25 Si 0.704 3.296 26 H -0.178 1.178 27 H -0.213 1.213 28 H -0.172 1.172 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.741 11.514 1.186 12.164 hybrid contribution 0.759 -0.014 -0.621 0.980 sum -2.982 11.500 0.565 11.894 Atomic orbital electron populations 1.21992 0.96949 1.01858 1.00975 1.22015 0.93478 0.93594 1.06008 1.21849 0.79413 0.98441 0.98509 0.90717 1.23071 0.97729 0.84537 0.97389 1.87912 1.20786 1.28279 1.93304 1.23049 0.81275 1.01739 0.97148 1.23298 1.01000 0.84774 0.98601 1.47749 1.05846 1.07265 1.73972 1.17186 0.85475 0.83067 0.76323 1.90847 1.70197 1.28954 1.48487 1.19845 0.90532 0.88219 1.13234 1.20818 0.91408 0.97614 1.14543 1.17974 0.93381 0.93554 1.07278 1.20158 0.90937 0.98459 1.00281 1.20372 0.96994 0.95001 1.05190 1.20580 0.96451 0.94717 1.03179 1.20308 0.90196 1.00187 1.02724 1.18459 0.86040 0.94781 1.06151 1.40198 1.01701 1.07526 1.42263 1.19616 1.25646 0.88172 1.12987 0.85219 1.25567 0.96650 0.95486 0.95885 1.69601 1.39315 1.11868 1.25621 0.86892 0.81578 0.82286 0.78881 1.17825 1.21335 1.17240 0.92376 0.93083 0.93151 0.90132 0.89247 0.87839 0.92597 0.87801 0.92600 0.90819 0.85123 0.83644 0.87103 0.87183 0.86874 0.86010 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.32 37.16 0.35 -1.53 16 2 C -0.11 -1.76 3.91 -26.74 -0.10 -1.86 16 3 C 0.12 1.74 3.23 -67.64 -0.22 1.52 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.05 0.64 5.57 37.09 0.21 0.84 16 6 O -0.38 -5.08 10.74 -35.23 -0.38 -5.46 16 7 C 0.05 0.55 6.99 37.31 0.26 0.81 16 8 C 0.05 0.61 5.18 -3.53 -0.02 0.60 16 9 N -0.61 -10.14 3.03 -166.45 -0.50 -10.64 16 10 C 0.59 12.40 7.48 -12.76 -0.10 12.31 16 11 O -0.51 -12.09 10.93 5.22 0.06 -12.03 16 12 C 0.00 -0.02 6.46 -82.25 -0.53 -0.55 16 13 C -0.22 -4.18 8.49 -39.02 -0.33 -4.51 16 14 C -0.12 -2.42 6.16 -106.89 -0.66 -3.08 16 15 C -0.08 -1.39 10.06 -39.52 -0.40 -1.79 16 16 C -0.16 -2.63 9.97 -39.96 -0.40 -3.02 16 17 C -0.13 -2.38 10.02 -39.50 -0.40 -2.78 16 18 C -0.11 -2.52 6.68 -39.41 -0.26 -2.78 16 19 C 0.06 1.38 4.63 -83.83 -0.39 0.99 16 20 N -0.25 -6.41 2.44 -56.08 -0.14 -6.54 16 21 C -0.34 -9.31 9.29 -15.00 -0.14 -9.45 16 22 H 0.13 3.95 7.37 -52.49 -0.39 3.57 16 23 C 0.08 2.07 5.39 -17.47 -0.09 1.98 16 24 N -0.83 -23.18 13.95 55.50 0.77 -22.40 16 25 Si 0.88 20.86 23.41 -169.99 -3.98 16.88 16 26 H -0.25 -5.62 5.84 56.52 0.33 -5.29 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.25 -6.13 6.35 56.52 0.36 -5.77 16 29 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.52 6.90 -51.93 -0.36 0.16 16 32 H 0.08 1.48 7.01 -51.93 -0.36 1.12 16 33 H 0.09 1.60 6.57 -51.93 -0.34 1.26 16 34 H 0.10 1.07 7.01 -51.92 -0.36 0.71 16 35 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.13 1.86 3.94 -51.93 -0.20 1.65 16 40 H 0.15 2.21 5.54 -52.48 -0.29 1.92 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.77 5.42 -52.49 -0.28 2.48 16 45 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -30.57 341.83 -8.31 -38.87 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.07 Total: 8.49 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -3.22 Total: -12.32 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.13 Total: -39.59 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.32 Total: -17.49 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -3.98 Total: 16.88 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.57 -8.31 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609657492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.060 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds