Wall clock time and date at job start Tue Mar 31 2020 15:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47132 * 2 1 4 4 H 1.09001 * 109.70761 * 63.16542 * 3 2 1 5 5 C 1.52875 * 109.62175 * 302.86294 * 3 2 1 6 6 O 1.42965 * 109.30244 * 188.10926 * 5 3 2 7 7 C 1.42965 * 114.16281 * 62.45102 * 6 5 3 8 8 C 1.53301 * 109.22116 * 297.42020 * 7 6 5 9 9 N 1.47150 * 108.38539 * 52.30172 * 8 7 6 10 10 C 1.34777 * 120.98271 * 129.44109 * 9 8 7 11 11 O 1.21664 * 120.00437 * 186.18109 * 10 9 8 12 12 C 1.46885 * 119.99713 * 6.18463 * 10 9 8 13 13 C 1.36120 * 125.43957 * 21.07409 * 12 10 9 14 14 C 1.41702 * 107.75211 * 179.97438 * 13 12 10 15 15 C 1.40021 * 133.35039 * 180.02562 * 14 13 12 16 16 C 1.36572 * 119.83024 * 180.02562 * 15 14 13 17 17 C 1.38852 * 120.60207 * 0.02562 * 16 15 14 18 18 C 1.37851 * 120.63468 * 359.97438 * 17 16 15 19 19 C 1.39088 * 119.80834 * 359.97438 * 18 17 16 20 20 N 1.37840 * 133.16193 * 179.97438 * 19 18 17 21 21 C 1.36893 * 125.62009 * 359.97438 * 20 19 18 22 22 H 1.07993 * 120.00310 * 130.96598 * 21 20 19 23 23 C 1.39015 * 119.99606 * 310.96226 * 21 20 19 24 24 N 1.31347 * 119.99983 * 178.49380 * 23 21 20 25 25 Si 1.86800 * 120.00024 * 358.49173 * 23 21 20 26 26 H 1.48503 * 109.46946 * 96.33357 * 25 23 21 27 27 H 1.48498 * 109.46900 * 216.33077 * 25 23 21 28 28 H 1.48500 * 109.47466 * 336.33297 * 25 23 21 29 29 H 1.09010 * 109.46846 * 185.55062 * 1 2 3 30 30 H 1.09001 * 109.47021 * 305.54729 * 1 2 3 31 31 H 1.08998 * 109.47663 * 65.54865 * 1 2 3 32 32 H 1.09002 * 109.46865 * 240.00209 * 2 1 3 33 33 H 1.09001 * 109.47442 * 120.00449 * 2 1 3 34 34 H 1.09008 * 109.58305 * 68.09929 * 5 3 2 35 35 H 1.09003 * 109.41171 * 308.02032 * 5 3 2 36 36 H 1.08999 * 109.51256 * 177.49405 * 7 6 5 37 37 H 1.09004 * 109.55489 * 57.36762 * 7 6 5 38 38 H 1.09000 * 109.67910 * 292.57953 * 8 7 6 39 39 H 1.08997 * 109.67935 * 172.02869 * 8 7 6 40 40 H 1.08005 * 126.12739 * 0.03629 * 13 12 10 41 41 H 1.08001 * 120.08445 * 0.05995 * 15 14 13 42 42 H 1.07999 * 119.70068 * 179.97438 * 16 15 14 43 43 H 1.08001 * 119.68519 * 179.97438 * 17 16 15 44 44 H 1.07996 * 120.09677 * 179.71752 * 18 17 16 45 45 H 0.96995 * 120.00130 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7257 1.9434 0.9157 5 6 1.4744 2.1869 -1.2095 6 8 2.0992 3.4689 -1.3099 7 6 3.5112 3.4163 -1.5274 8 6 4.1815 2.7356 -0.3284 9 7 3.5087 1.4489 -0.0894 10 6 4.2165 0.3091 0.0383 11 8 3.6399 -0.7589 0.1229 12 6 5.6842 0.3563 0.0753 13 6 6.4310 1.4488 0.3940 14 6 7.7961 1.0777 0.3126 15 6 8.9946 1.7693 0.5268 16 6 10.1884 1.1259 0.3656 17 6 10.2261 -0.2104 -0.0100 18 6 9.0597 -0.9123 -0.2267 19 6 7.8318 -0.2787 -0.0677 20 7 6.5274 -0.7016 -0.2082 21 6 6.1322 -1.9610 -0.5709 22 1 5.3784 -2.4773 0.0050 23 6 6.7012 -2.5755 -1.6805 24 7 6.3436 -3.7953 -2.0111 25 14 7.9743 -1.6663 -2.7012 26 1 9.3362 -2.0623 -2.2612 27 1 7.7974 -2.0112 -4.1347 28 1 7.8013 -0.2026 -2.5193 29 1 -0.3633 -1.0230 0.0994 30 1 -0.3633 0.5975 0.8362 31 1 -0.3634 0.4253 -0.9354 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.3985 2.3147 -1.0896 35 1 1.6741 1.6127 -2.1143 36 1 3.9008 4.4284 -1.6361 37 1 3.7199 2.8466 -2.4330 38 1 4.0865 3.3690 0.5536 39 1 5.2357 2.5639 -0.5459 40 1 6.0511 2.4237 0.6619 41 1 8.9750 2.8087 0.8194 42 1 11.1115 1.6614 0.5310 43 1 11.1785 -0.7045 -0.1337 44 1 9.0992 -1.9501 -0.5230 45 1 6.7403 -4.2239 -2.7855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609657492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:24 Heat of formation + Delta-G solvation = 1.865610 kcal Electronic energy + Delta-G solvation = -29334.431747 eV Core-core repulsion = 25511.252353 eV Total energy + Delta-G solvation = -3823.179394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.69403 -41.33588 -39.21665 -37.76828 -36.12880 -35.83510 -34.98842 -33.14877 -30.93256 -30.82380 -30.17877 -28.29634 -26.95262 -25.89604 -24.79233 -23.27472 -22.98498 -22.17012 -21.56750 -20.55779 -19.73136 -17.99939 -17.70539 -17.47782 -17.36109 -17.00762 -16.69610 -16.35123 -15.98579 -15.90149 -15.57756 -15.54835 -14.96251 -14.89522 -14.61881 -14.47360 -14.28514 -14.08271 -13.98609 -13.53211 -13.37024 -13.19478 -12.90949 -12.63919 -12.54280 -12.37218 -12.29875 -12.08667 -11.89452 -11.78160 -11.64359 -11.60354 -11.23090 -11.13720 -10.44291 -10.17448 -9.54094 -9.01627 -8.81468 -8.59002 -6.63986 -0.03093 0.89203 1.04463 1.11875 1.23254 1.34230 1.63930 1.96277 2.32493 2.64193 2.67516 2.82821 3.11461 3.51664 3.66426 3.90127 3.96764 4.00240 4.05686 4.17885 4.25403 4.32530 4.35707 4.39032 4.50089 4.51277 4.59017 4.65514 4.70527 4.76467 4.78299 4.85060 4.89820 4.97993 5.03922 5.21032 5.23873 5.24286 5.32819 5.42795 5.62934 5.65439 5.77627 5.82792 5.98510 6.06047 6.07356 6.31619 6.40294 6.77486 7.13134 7.23525 8.29492 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.005149 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.548541 B = 5436.811559 C = 6614.204224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C 0.118 3.882 4 H 0.098 0.902 5 C 0.057 3.943 6 O -0.384 6.384 7 C 0.046 3.954 8 C 0.040 3.960 9 N -0.605 5.605 10 C 0.578 3.422 11 O -0.556 6.556 12 C -0.033 4.033 13 C -0.177 4.177 14 C -0.139 4.139 15 C -0.063 4.063 16 C -0.154 4.154 17 C -0.104 4.104 18 C -0.167 4.167 19 C 0.041 3.959 20 N -0.295 5.295 21 C -0.348 4.348 22 H 0.074 0.926 23 C 0.034 3.966 24 N -0.888 5.888 25 Si 0.943 3.057 26 H -0.230 1.230 27 H -0.286 1.286 28 H -0.260 1.260 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.040 0.960 36 H 0.143 0.857 37 H 0.040 0.960 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.194 0.806 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.144 0.856 44 H 0.099 0.901 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 18.338 1.972 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C 0.015 3.985 4 H 0.115 0.885 5 C -0.020 4.020 6 O -0.302 6.302 7 C -0.031 4.031 8 C -0.081 4.081 9 N -0.340 5.340 10 C 0.368 3.632 11 O -0.435 6.435 12 C -0.148 4.148 13 C -0.204 4.204 14 C -0.143 4.143 15 C -0.081 4.081 16 C -0.173 4.173 17 C -0.124 4.124 18 C -0.187 4.187 19 C -0.071 4.071 20 N 0.039 4.961 21 C -0.476 4.476 22 H 0.092 0.908 23 C -0.173 4.173 24 N -0.521 5.521 25 Si 0.766 3.234 26 H -0.154 1.154 27 H -0.214 1.214 28 H -0.185 1.185 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.059 0.941 36 H 0.160 0.840 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.211 0.789 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.162 0.838 44 H 0.117 0.883 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.908 17.372 1.807 17.570 hybrid contribution 0.269 -1.556 -0.604 1.690 sum -1.639 15.816 1.202 15.946 Atomic orbital electron populations 1.21915 0.93572 1.02326 1.03003 1.21743 0.96275 0.94052 1.02305 1.22076 0.78110 0.97717 1.00571 0.88468 1.23079 0.99288 0.84115 0.95562 1.87923 1.21253 1.27970 1.93099 1.23186 0.80812 1.03455 0.95632 1.23547 1.00450 0.83370 1.00727 1.47881 1.06886 1.07168 1.72089 1.17429 0.85591 0.83819 0.76369 1.90850 1.70879 1.31032 1.50708 1.20414 0.91367 0.89123 1.13855 1.21394 0.90601 0.98114 1.10268 1.18482 0.95215 0.92574 1.08062 1.20719 0.89472 1.00384 0.97563 1.20937 0.98869 0.94143 1.03363 1.21121 0.96285 0.95629 0.99346 1.20398 0.91320 0.99933 1.07080 1.19012 0.85657 0.96438 1.05989 1.40151 1.02999 1.07165 1.45773 1.19006 1.25262 0.90188 1.13157 0.90847 1.26243 0.98479 0.96076 0.96484 1.69697 1.41819 1.13548 1.27002 0.85947 0.80477 0.80060 0.76906 1.15360 1.21361 1.18462 0.92941 0.90695 0.91176 0.94361 0.92751 0.84756 0.94144 0.83955 0.94117 0.87603 0.85875 0.78949 0.82342 0.82276 0.83779 0.88291 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.32 71.98 0.67 -2.81 16 2 C -0.11 -3.50 3.91 30.59 0.12 -3.38 16 3 C 0.12 3.29 3.23 44.82 0.14 3.44 16 4 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 5 C 0.06 1.33 5.57 71.94 0.40 1.73 16 6 O -0.38 -8.81 10.74 -148.98 -1.60 -10.41 16 7 C 0.05 0.96 6.99 72.08 0.50 1.46 16 8 C 0.04 0.95 5.18 86.36 0.45 1.40 16 9 N -0.61 -19.93 3.03 -798.76 -2.42 -22.35 16 10 C 0.58 25.82 7.48 86.51 0.65 26.46 16 11 O -0.56 -29.42 10.93 -4.23 -0.05 -29.46 16 12 C -0.03 -1.52 6.46 39.91 0.26 -1.27 16 13 C -0.18 -6.43 8.49 22.63 0.19 -6.24 16 14 C -0.14 -5.34 6.16 -21.34 -0.13 -5.47 16 15 C -0.06 -1.83 10.06 22.31 0.22 -1.60 16 16 C -0.15 -4.23 9.97 22.03 0.22 -4.01 16 17 C -0.10 -3.45 10.02 22.33 0.22 -3.23 16 18 C -0.17 -7.30 6.68 22.38 0.15 -7.15 16 19 C 0.04 1.95 4.63 39.06 0.18 2.13 16 20 N -0.30 -15.78 2.44 -331.35 -0.81 -16.59 16 21 C -0.35 -21.36 9.29 84.09 0.78 -20.58 16 22 H 0.07 5.15 7.37 -2.91 -0.02 5.12 16 23 C 0.03 2.00 5.39 84.95 0.46 2.46 16 24 N -0.89 -54.11 13.95 21.67 0.30 -53.81 16 25 Si 0.94 45.87 23.41 68.60 1.61 47.48 16 26 H -0.23 -10.11 5.84 99.48 0.58 -9.53 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 28 H -0.26 -12.92 6.35 99.48 0.63 -12.29 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.35 6.90 -2.39 -0.02 1.33 16 32 H 0.04 1.56 7.01 -2.39 -0.02 1.54 16 33 H 0.05 2.16 6.57 -2.39 -0.02 2.14 16 34 H 0.13 2.32 7.01 -2.38 -0.02 2.30 16 35 H 0.04 1.08 8.13 -2.39 -0.02 1.06 16 36 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.91 8.13 -2.39 -0.02 1.89 16 39 H 0.12 3.09 3.94 -2.39 -0.01 3.08 16 40 H 0.19 4.93 5.54 -2.91 -0.02 4.92 16 41 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 42 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.10 4.67 5.42 -2.91 -0.02 4.65 16 45 H 0.29 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -78.89 341.83 3.34 -75.55 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.81 Total: 26.24 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 5.49 Total: -16.65 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -2.92 Total: -92.74 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.65 Total: -39.87 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.61 Total: 47.48 kcal Total: -78.89 3.34 -75.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609657492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.420 kcal (2) G-P(sol) polarization free energy of solvation -78.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds