Wall clock time and date at job start Tue Mar 31 2020 16:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46834 * 2 1 4 4 C 1.52993 * 109.47104 * 239.99505 * 2 1 3 5 5 N 1.46503 * 109.47303 * 60.11227 * 4 2 1 6 6 C 1.34776 * 119.99947 * 185.42981 * 5 4 2 7 7 O 1.21668 * 120.00303 * 5.12872 * 6 5 4 8 8 C 1.46896 * 119.99763 * 185.12662 * 6 5 4 9 9 C 1.36120 * 125.43615 * 186.33627 * 8 6 5 10 10 C 1.41697 * 107.74685 * 180.25604 * 9 8 6 11 11 C 1.40024 * 133.35055 * 179.81031 * 10 9 8 12 12 C 1.36572 * 119.82944 * 179.97438 * 11 10 9 13 13 C 1.38852 * 120.60280 * 359.95353 * 12 11 10 14 14 C 1.37843 * 120.63283 * 0.02562 * 13 12 11 15 15 C 1.39085 * 119.81418 * 0.02562 * 14 13 12 16 16 N 1.37840 * 133.16418 * 180.02562 * 15 14 13 17 17 C 1.36885 * 125.61698 * 359.97438 * 16 15 14 18 18 H 1.07999 * 119.99898 * 224.21749 * 17 16 15 19 19 C 1.39014 * 120.00199 * 44.22328 * 17 16 15 20 20 N 1.31348 * 119.99763 * 200.28850 * 19 17 16 21 21 Si 1.86796 * 120.00110 * 20.28490 * 19 17 16 22 22 H 1.48503 * 109.47219 * 264.79645 * 21 19 17 23 23 H 1.48504 * 109.46873 * 24.79519 * 21 19 17 24 24 H 1.48495 * 109.47287 * 144.79746 * 21 19 17 25 25 C 1.53001 * 109.46883 * 119.99221 * 2 1 3 26 26 C 1.53006 * 117.50050 * 13.75250 * 25 2 1 27 27 C 1.52998 * 117.50305 * 305.09276 * 25 2 1 28 28 H 1.09004 * 109.46920 * 174.49436 * 1 2 3 29 29 H 1.09003 * 109.47179 * 294.49013 * 1 2 3 30 30 H 1.08998 * 109.47278 * 54.49989 * 1 2 3 31 31 H 0.96701 * 114.00220 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47234 * 300.10959 * 4 2 1 33 33 H 1.09000 * 109.46866 * 180.11103 * 4 2 1 34 34 H 0.97001 * 119.99749 * 5.42397 * 5 4 2 35 35 H 1.08003 * 126.12460 * 0.02562 * 9 8 6 36 36 H 1.08001 * 120.08400 * 359.93996 * 11 10 9 37 37 H 1.07999 * 119.69810 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.68428 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.09224 * 180.02562 * 14 13 12 40 40 H 0.97001 * 119.99745 * 174.98499 * 20 19 17 41 41 H 1.08996 * 115.54719 * 159.41705 * 25 2 1 42 42 H 1.09000 * 117.49764 * 359.97438 * 26 25 2 43 43 H 1.08998 * 117.49959 * 145.01615 * 26 25 2 44 44 H 1.09001 * 117.49792 * 214.98080 * 27 25 2 45 45 H 1.09003 * 117.49569 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.5539 -0.0293 -2.4454 6 6 1.7872 -0.5497 -3.6665 7 8 2.3186 -1.6391 -3.7722 8 6 1.3998 0.1983 -4.8699 9 6 1.4698 -0.2692 -6.1464 10 6 1.0114 0.7579 -7.0083 11 6 0.8640 0.8525 -8.3975 12 6 0.3827 2.0036 -8.9528 13 6 0.0361 3.0837 -8.1519 14 6 0.1718 3.0143 -6.7820 15 6 0.6609 1.8529 -6.1934 16 7 0.9036 1.4882 -4.8865 17 6 0.6918 2.2752 -3.7867 18 1 1.4357 2.3226 -3.0053 19 6 -0.4810 3.0133 -3.6757 20 7 -0.5326 4.0463 -2.8661 21 14 -1.9834 2.5361 -4.6779 22 1 -2.0204 3.3384 -5.9270 23 1 -1.9128 1.0925 -5.0188 24 1 -3.2111 2.7981 -3.8848 25 6 2.0400 -0.7211 1.2494 26 6 1.0326 -1.5531 2.0455 27 6 1.5399 -0.2224 2.6066 28 1 -0.3633 -1.0230 -0.0986 29 1 -0.3634 0.4260 0.9352 30 1 -0.3634 0.5968 -0.8366 31 1 2.9703 1.4237 -0.0004 32 1 1.6751 -1.7485 -1.2500 33 1 3.1300 -0.7230 -1.2481 34 1 1.0641 0.8035 -2.3585 35 1 1.8165 -1.2464 -6.4485 36 1 1.1309 0.0175 -9.0283 37 1 0.2702 2.0744 -10.0246 38 1 -0.3435 3.9868 -8.6068 39 1 -0.1008 3.8595 -6.1673 40 1 -1.3254 4.6046 -2.8422 41 1 3.0646 -1.0887 1.1946 42 1 0.0064 -1.5865 1.6795 43 1 1.3946 -2.4679 2.5149 44 1 2.2355 -0.2621 3.4448 45 1 0.8479 0.6198 2.6094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610357122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:31 Heat of formation + Delta-G solvation = 5.549114 kcal Electronic energy + Delta-G solvation = -28655.261158 eV Core-core repulsion = 24832.241492 eV Total energy + Delta-G solvation = -3823.019665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81972 -39.56816 -38.25872 -36.17699 -35.61742 -34.05112 -33.42341 -31.40040 -30.50419 -29.24609 -28.39311 -26.71087 -24.93963 -23.89805 -22.54892 -22.10694 -21.17154 -20.19144 -19.81555 -19.16472 -18.46565 -16.87848 -16.79511 -15.93227 -15.84362 -15.29811 -15.12598 -14.91691 -14.58846 -14.14303 -14.00362 -13.81181 -13.41521 -13.29043 -13.06491 -12.93899 -12.72435 -12.35050 -12.25167 -12.18110 -12.03932 -11.67910 -11.44036 -11.32676 -11.02825 -10.99825 -10.80122 -10.58424 -10.52776 -10.30672 -10.23503 -9.92516 -9.86873 -9.51038 -9.42531 -8.74759 -8.51925 -7.39343 -7.01254 -6.93064 -4.71048 1.58776 2.46322 2.82908 2.98286 3.09290 3.16929 3.52959 3.78665 3.82884 4.05776 4.13531 4.46153 4.51144 4.61309 4.73676 4.75655 4.86636 4.99328 5.10987 5.32836 5.51703 5.53341 5.63839 5.69203 5.73844 5.79402 5.86058 5.90195 5.95060 5.99389 6.06658 6.14247 6.17501 6.22824 6.39411 6.41890 6.59814 6.75375 6.82288 7.00181 7.13419 7.22785 7.32924 7.53735 7.62977 7.72584 7.81308 8.06521 8.24092 8.57908 8.89257 8.99562 10.02609 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.004261 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.353932 B = 6568.978089 C = 7693.462374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.153 3.847 3 O -0.541 6.541 4 C 0.098 3.902 5 N -0.720 5.720 6 C 0.593 3.407 7 O -0.559 6.559 8 C -0.014 4.014 9 C -0.160 4.160 10 C -0.126 4.126 11 C -0.076 4.076 12 C -0.160 4.160 13 C -0.130 4.130 14 C -0.102 4.102 15 C 0.063 3.937 16 N -0.273 5.273 17 C -0.378 4.378 18 H 0.128 0.872 19 C 0.090 3.910 20 N -0.813 5.813 21 Si 0.867 3.133 22 H -0.246 1.246 23 H -0.254 1.254 24 H -0.280 1.280 25 C -0.183 4.183 26 C -0.177 4.177 27 C -0.164 4.164 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.374 0.626 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.425 0.575 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.288 0.712 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 -4.621 4.876 6.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.112 3.888 3 O -0.346 6.346 4 C -0.027 4.027 5 N -0.381 5.381 6 C 0.382 3.618 7 O -0.439 6.439 8 C -0.129 4.129 9 C -0.187 4.187 10 C -0.132 4.132 11 C -0.095 4.095 12 C -0.179 4.179 13 C -0.151 4.151 14 C -0.121 4.121 15 C -0.050 4.050 16 N 0.063 4.937 17 C -0.505 4.505 18 H 0.145 0.855 19 C -0.126 4.126 20 N -0.440 5.440 21 Si 0.690 3.310 22 H -0.170 1.170 23 H -0.177 1.177 24 H -0.206 1.206 25 C -0.202 4.202 26 C -0.214 4.214 27 C -0.201 4.201 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.221 0.779 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.272 0.728 35 H 0.155 0.845 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.459 -4.870 5.398 7.285 hybrid contribution -0.279 0.211 -0.218 0.412 sum 0.180 -4.659 5.180 6.969 Atomic orbital electron populations 1.21877 0.92387 1.02413 1.03551 1.20810 0.95130 0.82232 0.90618 1.86696 1.26449 1.24688 1.96746 1.21884 0.98844 0.97078 0.84923 1.46644 1.58012 1.29190 1.04260 1.17223 0.77729 0.84499 0.82365 1.90718 1.45181 1.20886 1.87134 1.20222 1.12095 0.86038 0.94524 1.20454 1.08878 0.99283 0.90108 1.18010 1.07110 0.94908 0.93130 1.20172 0.99499 0.97343 0.92497 1.20352 1.04733 0.94265 0.98593 1.20588 1.03331 0.98604 0.92543 1.20180 1.01241 0.96068 0.94638 1.18435 1.06117 0.96190 0.84300 1.40286 1.41670 1.07928 1.03864 1.19264 1.06021 1.25299 0.99875 0.85531 1.25464 0.98334 0.93685 0.95138 1.69668 1.30340 1.10876 1.33137 0.86957 0.81033 0.82280 0.80726 1.16977 1.17708 1.20605 1.22914 0.99583 1.04668 0.93082 1.23116 0.99663 0.95037 1.03612 1.22881 1.03724 0.97946 0.95585 0.91027 0.91713 0.90746 0.77906 0.90770 0.92008 0.72755 0.84457 0.87128 0.87276 0.86990 0.86438 0.90100 0.87577 0.87940 0.88873 0.88960 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 7.22 37.16 0.27 -1.82 16 2 C 0.15 2.10 0.88 -90.62 -0.08 2.02 16 3 O -0.54 -8.21 12.63 -35.23 -0.44 -8.66 16 4 C 0.10 1.53 4.81 -4.04 -0.02 1.51 16 5 N -0.72 -14.07 4.92 -61.55 -0.30 -14.38 16 6 C 0.59 13.17 7.76 -12.76 -0.10 13.07 16 7 O -0.56 -13.05 16.82 5.22 0.09 -12.97 16 8 C -0.01 -0.33 6.77 -82.25 -0.56 -0.89 16 9 C -0.16 -3.55 10.55 -39.02 -0.41 -3.96 16 10 C -0.13 -2.79 6.16 -106.89 -0.66 -3.45 16 11 C -0.08 -1.43 10.06 -39.51 -0.40 -1.83 16 12 C -0.16 -2.81 9.97 -39.96 -0.40 -3.21 16 13 C -0.13 -2.45 10.02 -39.50 -0.40 -2.84 16 14 C -0.10 -2.22 6.94 -39.41 -0.27 -2.49 16 15 C 0.06 1.49 5.18 -83.83 -0.43 1.06 16 16 N -0.27 -6.59 2.37 -56.08 -0.13 -6.73 16 17 C -0.38 -9.31 8.01 -15.01 -0.12 -9.43 16 18 H 0.13 3.23 6.73 -52.49 -0.35 2.88 16 19 C 0.09 2.20 4.88 -17.47 -0.09 2.12 16 20 N -0.81 -20.20 13.95 55.50 0.77 -19.43 16 21 Si 0.87 19.61 24.56 -169.99 -4.17 15.43 16 22 H -0.25 -5.34 5.77 56.52 0.33 -5.01 16 23 H -0.25 -6.16 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.18 -2.02 5.32 -90.62 -0.48 -2.50 16 26 C -0.18 -1.74 9.64 -26.69 -0.26 -1.99 16 27 C -0.16 -1.66 9.82 -26.70 -0.26 -1.92 16 28 H 0.07 0.91 7.12 -51.93 -0.37 0.54 16 29 H 0.06 0.86 6.59 -51.93 -0.34 0.51 16 30 H 0.07 1.28 7.15 -51.93 -0.37 0.91 16 31 H 0.37 4.45 9.05 45.56 0.41 4.86 16 32 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.42 8.85 3.46 -40.82 -0.14 8.71 16 35 H 0.14 2.78 8.06 -52.48 -0.42 2.35 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.12 2.61 6.11 -52.48 -0.32 2.29 16 40 H 0.29 6.63 8.31 -40.82 -0.34 6.30 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.10 1.01 5.96 -51.93 -0.31 0.70 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.10 1.10 7.25 -51.93 -0.38 0.72 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -28.55 359.85 -8.62 -37.17 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -5.19 Total: 20.68 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -4.66 Total: -16.56 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.34 Total: -40.53 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.36 Total: -21.62 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.17 Total: 15.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.55 -8.62 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610357122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.722 kcal (2) G-P(sol) polarization free energy of solvation -28.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds