Wall clock time and date at job start Tue Mar 31 2020 16:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46834 * 2 1 4 4 C 1.52993 * 109.47104 * 239.99505 * 2 1 3 5 5 N 1.46503 * 109.47303 * 60.11227 * 4 2 1 6 6 C 1.34776 * 119.99947 * 185.42981 * 5 4 2 7 7 O 1.21668 * 120.00303 * 5.12872 * 6 5 4 8 8 C 1.46896 * 119.99763 * 185.12662 * 6 5 4 9 9 C 1.36120 * 125.43615 * 186.33627 * 8 6 5 10 10 C 1.41697 * 107.74685 * 180.25604 * 9 8 6 11 11 C 1.40024 * 133.35055 * 179.81031 * 10 9 8 12 12 C 1.36572 * 119.82944 * 179.97438 * 11 10 9 13 13 C 1.38852 * 120.60280 * 359.95353 * 12 11 10 14 14 C 1.37843 * 120.63283 * 0.02562 * 13 12 11 15 15 C 1.39085 * 119.81418 * 0.02562 * 14 13 12 16 16 N 1.37840 * 133.16418 * 180.02562 * 15 14 13 17 17 C 1.36885 * 125.61698 * 359.97438 * 16 15 14 18 18 H 1.07999 * 119.99898 * 224.21749 * 17 16 15 19 19 C 1.39014 * 120.00199 * 44.22328 * 17 16 15 20 20 N 1.31348 * 119.99763 * 200.28850 * 19 17 16 21 21 Si 1.86796 * 120.00110 * 20.28490 * 19 17 16 22 22 H 1.48503 * 109.47219 * 264.79645 * 21 19 17 23 23 H 1.48504 * 109.46873 * 24.79519 * 21 19 17 24 24 H 1.48495 * 109.47287 * 144.79746 * 21 19 17 25 25 C 1.53001 * 109.46883 * 119.99221 * 2 1 3 26 26 C 1.53006 * 117.50050 * 13.75250 * 25 2 1 27 27 C 1.52998 * 117.50305 * 305.09276 * 25 2 1 28 28 H 1.09004 * 109.46920 * 174.49436 * 1 2 3 29 29 H 1.09003 * 109.47179 * 294.49013 * 1 2 3 30 30 H 1.08998 * 109.47278 * 54.49989 * 1 2 3 31 31 H 0.96701 * 114.00220 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47234 * 300.10959 * 4 2 1 33 33 H 1.09000 * 109.46866 * 180.11103 * 4 2 1 34 34 H 0.97001 * 119.99749 * 5.42397 * 5 4 2 35 35 H 1.08003 * 126.12460 * 0.02562 * 9 8 6 36 36 H 1.08001 * 120.08400 * 359.93996 * 11 10 9 37 37 H 1.07999 * 119.69810 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.68428 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.09224 * 180.02562 * 14 13 12 40 40 H 0.97001 * 119.99745 * 174.98499 * 20 19 17 41 41 H 1.08996 * 115.54719 * 159.41705 * 25 2 1 42 42 H 1.09000 * 117.49764 * 359.97438 * 26 25 2 43 43 H 1.08998 * 117.49959 * 145.01615 * 26 25 2 44 44 H 1.09001 * 117.49792 * 214.98080 * 27 25 2 45 45 H 1.09003 * 117.49569 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.5539 -0.0293 -2.4454 6 6 1.7872 -0.5497 -3.6665 7 8 2.3186 -1.6391 -3.7722 8 6 1.3998 0.1983 -4.8699 9 6 1.4698 -0.2692 -6.1464 10 6 1.0114 0.7579 -7.0083 11 6 0.8640 0.8525 -8.3975 12 6 0.3827 2.0036 -8.9528 13 6 0.0361 3.0837 -8.1519 14 6 0.1718 3.0143 -6.7820 15 6 0.6609 1.8529 -6.1934 16 7 0.9036 1.4882 -4.8865 17 6 0.6918 2.2752 -3.7867 18 1 1.4357 2.3226 -3.0053 19 6 -0.4810 3.0133 -3.6757 20 7 -0.5326 4.0463 -2.8661 21 14 -1.9834 2.5361 -4.6779 22 1 -2.0204 3.3384 -5.9270 23 1 -1.9128 1.0925 -5.0188 24 1 -3.2111 2.7981 -3.8848 25 6 2.0400 -0.7211 1.2494 26 6 1.0326 -1.5531 2.0455 27 6 1.5399 -0.2224 2.6066 28 1 -0.3633 -1.0230 -0.0986 29 1 -0.3634 0.4260 0.9352 30 1 -0.3634 0.5968 -0.8366 31 1 2.9703 1.4237 -0.0004 32 1 1.6751 -1.7485 -1.2500 33 1 3.1300 -0.7230 -1.2481 34 1 1.0641 0.8035 -2.3585 35 1 1.8165 -1.2464 -6.4485 36 1 1.1309 0.0175 -9.0283 37 1 0.2702 2.0744 -10.0246 38 1 -0.3435 3.9868 -8.6068 39 1 -0.1008 3.8595 -6.1673 40 1 -1.3254 4.6046 -2.8422 41 1 3.0646 -1.0887 1.1946 42 1 0.0064 -1.5865 1.6795 43 1 1.3946 -2.4679 2.5149 44 1 2.2355 -0.2621 3.4448 45 1 0.8479 0.6198 2.6094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610357122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:30 Heat of formation + Delta-G solvation = -12.438301 kcal Electronic energy + Delta-G solvation = -28656.041151 eV Core-core repulsion = 24832.241492 eV Total energy + Delta-G solvation = -3823.799658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.49623 -40.82965 -39.72058 -37.77541 -36.68967 -35.65798 -35.10164 -33.11322 -31.80147 -30.81232 -29.97134 -28.02750 -26.73117 -25.23311 -23.62700 -23.15657 -22.81755 -21.77164 -21.21224 -20.56422 -20.19784 -18.39396 -17.97898 -17.59860 -17.17450 -16.70273 -16.60919 -16.39336 -16.21422 -15.74025 -15.34239 -15.23645 -15.00110 -14.79909 -14.71278 -14.44062 -13.96498 -13.90783 -13.67252 -13.54371 -13.39465 -13.19464 -12.89619 -12.78063 -12.48141 -12.29877 -12.17435 -12.01490 -11.84834 -11.53700 -11.47632 -11.34086 -11.28478 -11.11591 -10.80732 -10.45205 -10.10293 -9.05329 -8.84399 -8.62602 -6.58617 -0.04564 0.89104 1.09338 1.17393 1.30340 1.32847 1.98700 2.17483 2.28384 2.43011 2.74571 2.83035 3.14222 3.41913 3.47120 3.71618 3.84356 3.93952 4.03848 4.09726 4.15753 4.29399 4.32362 4.37445 4.53561 4.58703 4.66552 4.67741 4.73013 4.80176 4.82778 4.89179 4.98968 5.03019 5.11978 5.12933 5.26100 5.27121 5.28396 5.36081 5.44029 5.68191 5.73224 5.81125 5.99155 6.05071 6.38406 6.52738 6.76307 6.79784 7.18716 7.21750 8.20418 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.004261 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.353932 B = 6568.978089 C = 7693.462374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.159 3.841 3 O -0.563 6.563 4 C 0.094 3.906 5 N -0.716 5.716 6 C 0.587 3.413 7 O -0.578 6.578 8 C -0.042 4.042 9 C -0.160 4.160 10 C -0.145 4.145 11 C -0.075 4.075 12 C -0.152 4.152 13 C -0.112 4.112 14 C -0.140 4.140 15 C 0.043 3.957 16 N -0.292 5.292 17 C -0.382 4.382 18 H 0.106 0.894 19 C 0.070 3.930 20 N -0.843 5.843 21 Si 0.908 3.092 22 H -0.229 1.229 23 H -0.281 1.281 24 H -0.272 1.272 25 C -0.190 4.190 26 C -0.170 4.170 27 C -0.161 4.161 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.386 0.614 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.420 0.580 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.104 0.896 40 H 0.294 0.706 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 -5.259 3.311 6.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.119 3.881 3 O -0.370 6.370 4 C -0.030 4.030 5 N -0.374 5.374 6 C 0.376 3.624 7 O -0.460 6.460 8 C -0.156 4.156 9 C -0.187 4.187 10 C -0.150 4.150 11 C -0.093 4.093 12 C -0.170 4.170 13 C -0.132 4.132 14 C -0.160 4.160 15 C -0.070 4.070 16 N 0.042 4.958 17 C -0.508 4.508 18 H 0.123 0.877 19 C -0.144 4.144 20 N -0.472 5.472 21 Si 0.731 3.269 22 H -0.153 1.153 23 H -0.207 1.207 24 H -0.198 1.198 25 C -0.208 4.208 26 C -0.207 4.207 27 C -0.198 4.198 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.234 0.766 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.266 0.734 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.270 -5.489 3.851 6.711 hybrid contribution -0.162 0.387 0.104 0.432 sum 0.108 -5.102 3.955 6.457 Atomic orbital electron populations 1.21895 0.93171 1.02692 1.02430 1.20764 0.94523 0.81792 0.91059 1.86668 1.27732 1.25806 1.96824 1.22148 0.99386 0.97117 0.84304 1.46675 1.57090 1.28819 1.04792 1.17265 0.77839 0.84355 0.82987 1.90681 1.46400 1.21423 1.87471 1.20591 1.12823 0.86522 0.95635 1.20761 1.08092 0.99973 0.89898 1.18404 1.07629 0.94245 0.94746 1.20637 0.98376 0.99090 0.91228 1.20881 1.02482 0.92852 1.00823 1.21122 1.00523 1.00220 0.91286 1.20314 1.03990 0.95525 0.96169 1.18908 1.06400 0.97428 0.84239 1.40287 1.43252 1.08215 1.04064 1.19052 1.05743 1.25862 1.00155 0.87698 1.25784 0.99406 0.93537 0.95662 1.69688 1.31215 1.11817 1.34517 0.86373 0.79524 0.80271 0.80753 1.15252 1.20672 1.19804 1.22795 1.00589 1.05498 0.91952 1.23220 0.99204 0.95614 1.02629 1.22920 1.03683 0.97762 0.95408 0.89524 0.90762 0.94374 0.76550 0.90446 0.91102 0.73434 0.82903 0.83720 0.82602 0.83556 0.87758 0.89500 0.86163 0.88199 0.86939 0.87142 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 7.22 71.98 0.52 -3.77 16 2 C 0.16 4.44 0.88 -10.79 -0.01 4.43 16 3 O -0.56 -17.74 12.63 -148.98 -1.88 -19.62 16 4 C 0.09 3.02 4.81 86.38 0.42 3.43 16 5 N -0.72 -29.32 4.92 -466.88 -2.30 -31.62 16 6 C 0.59 27.04 7.76 86.51 0.67 27.71 16 7 O -0.58 -27.53 16.82 -4.25 -0.07 -27.60 16 8 C -0.04 -2.04 6.77 39.91 0.27 -1.77 16 9 C -0.16 -7.11 10.55 22.63 0.24 -6.87 16 10 C -0.15 -6.26 6.16 -21.34 -0.13 -6.39 16 11 C -0.07 -2.54 10.06 22.31 0.22 -2.32 16 12 C -0.15 -4.59 9.97 22.03 0.22 -4.37 16 13 C -0.11 -3.79 10.02 22.32 0.22 -3.57 16 14 C -0.14 -6.00 6.94 22.38 0.16 -5.84 16 15 C 0.04 2.05 5.18 39.06 0.20 2.25 16 16 N -0.29 -14.62 2.37 -331.34 -0.79 -15.40 16 17 C -0.38 -19.78 8.01 84.09 0.67 -19.10 16 18 H 0.11 5.75 6.73 -2.91 -0.02 5.73 16 19 C 0.07 3.54 4.88 84.95 0.41 3.95 16 20 N -0.84 -43.45 13.95 21.67 0.30 -43.15 16 21 Si 0.91 41.32 24.56 68.60 1.68 43.00 16 22 H -0.23 -9.70 5.77 99.48 0.57 -9.13 16 23 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C -0.19 -3.93 5.32 -10.79 -0.06 -3.99 16 26 C -0.17 -3.00 9.64 30.62 0.30 -2.71 16 27 C -0.16 -3.01 9.82 30.62 0.30 -2.71 16 28 H 0.09 2.23 7.12 -2.38 -0.02 2.21 16 29 H 0.07 2.01 6.59 -2.39 -0.02 1.99 16 30 H 0.04 1.39 7.15 -2.39 -0.02 1.38 16 31 H 0.39 9.52 9.05 -74.06 -0.67 8.85 16 32 H 0.08 2.44 8.09 -2.39 -0.02 2.42 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.42 18.63 3.46 -92.71 -0.32 18.31 16 35 H 0.15 6.11 8.06 -2.91 -0.02 6.09 16 36 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 38 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 39 H 0.10 4.66 6.11 -2.91 -0.02 4.65 16 40 H 0.29 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.10 1.82 5.96 -2.39 -0.01 1.81 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 1.86 7.25 -2.39 -0.02 1.85 16 Total: -1.00 -64.04 359.85 1.49 -62.55 By element: Atomic # 1 Polarization: 53.55 SS G_CDS: -0.08 Total: 53.47 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 4.63 Total: -21.63 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -2.78 Total: -90.17 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.95 Total: -47.21 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.68 Total: 43.00 kcal Total: -64.04 1.49 -62.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610357122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.110 kcal (2) G-P(sol) polarization free energy of solvation -64.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds