Wall clock time and date at job start Tue Mar 31 2020 16:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.46997 * 2 1 4 4 C 1.52996 * 109.47510 * 120.00439 * 2 1 3 5 5 N 1.46500 * 109.46920 * 298.44783 * 4 2 1 6 6 C 1.34781 * 120.00079 * 183.97506 * 5 4 2 7 7 O 1.21661 * 120.00221 * 4.87705 * 6 5 4 8 8 C 1.46887 * 119.99742 * 184.88471 * 6 5 4 9 9 C 1.36128 * 125.43421 * 173.89916 * 8 6 5 10 10 C 1.41700 * 107.74791 * 180.23786 * 9 8 6 11 11 C 1.40027 * 133.35033 * 179.81297 * 10 9 8 12 12 C 1.36572 * 119.83006 * 179.97438 * 11 10 9 13 13 C 1.38856 * 120.60142 * 0.02562 * 12 11 10 14 14 C 1.37845 * 120.63171 * 359.97313 * 13 12 11 15 15 C 1.39079 * 119.81839 * 0.02562 * 14 13 12 16 16 N 1.37834 * 133.16777 * 180.02562 * 15 14 13 17 17 C 1.36889 * 125.61982 * 359.94108 * 16 15 14 18 18 H 1.07999 * 119.99984 * 129.98435 * 17 16 15 19 19 C 1.39009 * 119.99836 * 309.97956 * 17 16 15 20 20 N 1.31353 * 119.99621 * 156.86784 * 19 17 16 21 21 Si 1.86796 * 120.00382 * 336.59344 * 19 17 16 22 22 H 1.48500 * 109.47221 * 185.45540 * 21 19 17 23 23 H 1.48498 * 109.47095 * 305.45753 * 21 19 17 24 24 H 1.48505 * 109.46916 * 65.45563 * 21 19 17 25 25 C 1.53004 * 109.47163 * 240.00247 * 2 1 3 26 26 C 1.52998 * 117.49576 * 128.74193 * 25 2 1 27 27 C 1.52999 * 117.49719 * 60.08663 * 25 2 1 28 28 H 1.08996 * 109.47188 * 305.11746 * 1 2 3 29 29 H 1.08993 * 109.47725 * 65.12055 * 1 2 3 30 30 H 1.09001 * 109.46896 * 185.12336 * 1 2 3 31 31 H 0.96701 * 114.00097 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47486 * 178.45235 * 4 2 1 33 33 H 1.09000 * 109.47423 * 58.44565 * 4 2 1 34 34 H 0.97009 * 120.00076 * 3.97641 * 5 4 2 35 35 H 1.07998 * 126.12533 * 0.02562 * 9 8 6 36 36 H 1.07997 * 120.08236 * 359.95355 * 11 10 9 37 37 H 1.08002 * 119.69864 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.68558 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.09399 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00533 * 359.72261 * 20 19 17 41 41 H 1.08996 * 115.55441 * 274.41611 * 25 2 1 42 42 H 1.08994 * 117.50472 * 0.02562 * 26 25 2 43 43 H 1.09000 * 117.49651 * 145.02276 * 26 25 2 44 44 H 1.09004 * 117.49878 * 214.98358 * 27 25 2 45 45 H 1.09006 * 117.50185 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.5825 -0.0095 2.4450 6 6 1.9795 -0.4191 3.6662 7 8 2.7869 -1.3230 3.7720 8 6 1.4370 0.2258 4.8694 9 6 1.6677 -0.1726 6.1504 10 6 0.9620 0.7058 7.0097 11 6 0.8241 0.7848 8.4009 12 6 0.0564 1.7704 8.9526 13 6 -0.5909 2.6971 8.1462 14 6 -0.4703 2.6398 6.7742 15 6 0.3060 1.6452 6.1891 16 7 0.6125 1.3350 4.8816 17 6 0.1693 2.0111 3.7769 18 1 0.8715 2.3277 3.0198 19 6 -1.1845 2.2900 3.6295 20 7 -1.5704 3.2850 2.8638 21 14 -2.4552 1.2451 4.5142 22 1 -3.8174 1.6593 4.0922 23 1 -2.2446 -0.1848 4.1731 24 1 -2.3137 1.4300 5.9809 25 6 2.0400 -0.7212 -1.2493 26 6 3.0762 0.0041 -2.1101 27 6 1.6374 -0.1482 -2.6096 28 1 -0.3633 0.5911 0.8406 29 1 -0.3634 0.4323 -0.9322 30 1 -0.3633 -1.0236 0.0918 31 1 2.9703 1.4237 -0.0004 32 1 3.1297 -0.7454 1.2353 33 1 1.6542 -1.7406 1.2632 34 1 0.9939 0.7566 2.3580 35 1 2.2764 -1.0104 6.4569 36 1 1.3233 0.0680 9.0359 37 1 -0.0481 1.8296 10.0259 38 1 -1.1947 3.4701 8.5982 39 1 -0.9780 3.3648 6.1552 40 1 -0.9106 3.8277 2.4044 41 1 2.1253 -1.8045 -1.1649 42 1 3.3949 0.9948 -1.7863 43 1 3.8431 -0.6021 -2.5923 44 1 1.4581 -0.8546 -3.4202 45 1 1.0088 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610357123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:36 Heat of formation + Delta-G solvation = -5.088504 kcal Electronic energy + Delta-G solvation = -28690.650687 eV Core-core repulsion = 24867.169740 eV Total energy + Delta-G solvation = -3823.480947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.78907 -39.62066 -38.29274 -36.16389 -35.35761 -34.09985 -33.48142 -31.32058 -30.90866 -29.18367 -28.38075 -26.58500 -24.55296 -23.76225 -22.43090 -22.12098 -21.05459 -20.20741 -20.00471 -19.18076 -18.82631 -17.04356 -16.84663 -15.95921 -15.92540 -15.29869 -15.04285 -14.90142 -14.68654 -14.20342 -13.85052 -13.79015 -13.52115 -13.24891 -13.08565 -12.76743 -12.60422 -12.40733 -12.27931 -12.20499 -12.06701 -11.83523 -11.44160 -11.12858 -11.01852 -10.96728 -10.64036 -10.54470 -10.42136 -10.25028 -10.18104 -9.94513 -9.87644 -9.46721 -9.34617 -8.66903 -8.53751 -7.58342 -7.25224 -6.87047 -4.81278 1.60400 2.48744 2.89224 3.13758 3.19482 3.36508 3.56391 3.71249 3.93198 4.10159 4.16085 4.29202 4.51882 4.63262 4.70726 4.76642 4.78381 5.00605 5.17714 5.27586 5.49717 5.52427 5.64193 5.69725 5.71262 5.78900 5.85401 5.87570 5.97272 5.99817 6.08035 6.10683 6.18625 6.26395 6.40895 6.44200 6.63747 6.78305 6.83647 6.98695 7.23443 7.29602 7.35837 7.48893 7.63765 7.66363 7.80201 8.12600 8.19941 8.48576 8.88455 9.07582 9.98271 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.004268 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.489678 B = 6558.744266 C = 7626.880358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.153 3.847 3 O -0.547 6.547 4 C 0.097 3.903 5 N -0.719 5.719 6 C 0.593 3.407 7 O -0.560 6.560 8 C -0.015 4.015 9 C -0.161 4.161 10 C -0.128 4.128 11 C -0.078 4.078 12 C -0.159 4.159 13 C -0.132 4.132 14 C -0.090 4.090 15 C 0.072 3.928 16 N -0.275 5.275 17 C -0.455 4.455 18 H 0.107 0.893 19 C 0.057 3.943 20 N -0.820 5.820 21 Si 1.015 2.985 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.246 1.246 25 C -0.181 4.181 26 C -0.178 4.178 27 C -0.166 4.166 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.373 0.627 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.424 0.576 35 H 0.137 0.863 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.287 0.713 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -4.087 -4.780 6.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.112 3.888 3 O -0.354 6.354 4 C -0.028 4.028 5 N -0.380 5.380 6 C 0.381 3.619 7 O -0.440 6.440 8 C -0.129 4.129 9 C -0.188 4.188 10 C -0.133 4.133 11 C -0.097 4.097 12 C -0.178 4.178 13 C -0.152 4.152 14 C -0.110 4.110 15 C -0.042 4.042 16 N 0.059 4.941 17 C -0.581 4.581 18 H 0.124 0.876 19 C -0.161 4.161 20 N -0.446 5.446 21 Si 0.838 3.162 22 H -0.198 1.198 23 H -0.199 1.199 24 H -0.170 1.170 25 C -0.200 4.200 26 C -0.215 4.215 27 C -0.203 4.203 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.221 0.779 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.271 0.729 35 H 0.154 0.846 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.107 -4.541 -4.955 6.811 hybrid contribution 2.040 0.434 -0.539 2.154 sum 3.147 -4.106 -5.494 7.547 Atomic orbital electron populations 1.21765 0.91631 1.02723 1.03649 1.20873 0.95364 0.81812 0.90744 1.86643 1.26490 1.25513 1.96709 1.21883 0.99656 0.96297 0.84983 1.46650 1.51697 1.35384 1.04227 1.17251 0.80175 0.82018 0.82423 1.90714 1.34463 1.31693 1.87161 1.20389 1.05277 0.92929 0.94280 1.20480 1.05873 1.02427 0.90056 1.18042 1.03112 0.99066 0.93105 1.20160 0.98931 0.98148 0.92479 1.20353 1.01433 0.97490 0.98551 1.20608 1.01938 1.00080 0.92563 1.20107 0.99020 0.97455 0.94389 1.18547 1.02559 0.98739 0.84365 1.40289 1.32507 1.17453 1.03808 1.20602 0.95155 1.40641 1.01708 0.87619 1.26621 0.97022 0.95596 0.96854 1.70824 1.39176 1.10717 1.23865 0.84368 0.76270 0.76496 0.79067 1.19820 1.19903 1.16999 1.22971 1.04941 0.99800 0.92301 1.22982 0.92628 1.02220 1.03690 1.22897 0.97952 1.03263 0.96172 0.90652 0.91687 0.91098 0.77920 0.91492 0.91282 0.72863 0.84565 0.87209 0.87327 0.86955 0.86602 0.90199 0.87076 0.88244 0.88866 0.88959 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.53 37.16 0.32 -1.76 16 2 C 0.15 2.10 0.86 -90.62 -0.08 2.02 16 3 O -0.55 -7.99 11.86 -35.23 -0.42 -8.40 16 4 C 0.10 1.53 4.77 -4.04 -0.02 1.51 16 5 N -0.72 -14.17 5.14 -61.55 -0.32 -14.49 16 6 C 0.59 13.27 7.76 -12.76 -0.10 13.17 16 7 O -0.56 -13.17 16.84 5.22 0.09 -13.09 16 8 C -0.01 -0.34 6.77 -82.25 -0.56 -0.90 16 9 C -0.16 -3.57 10.55 -39.02 -0.41 -3.98 16 10 C -0.13 -2.80 6.16 -106.89 -0.66 -3.46 16 11 C -0.08 -1.46 10.06 -39.51 -0.40 -1.86 16 12 C -0.16 -2.77 9.97 -39.95 -0.40 -3.16 16 13 C -0.13 -2.43 10.02 -39.50 -0.40 -2.83 16 14 C -0.09 -1.94 7.19 -39.41 -0.28 -2.22 16 15 C 0.07 1.67 5.19 -83.84 -0.44 1.23 16 16 N -0.27 -6.59 2.23 -56.08 -0.12 -6.72 16 17 C -0.45 -11.04 7.66 -15.01 -0.11 -11.15 16 18 H 0.11 2.66 6.90 -52.49 -0.36 2.30 16 19 C 0.06 1.38 4.81 -17.47 -0.08 1.30 16 20 N -0.82 -20.49 13.69 55.50 0.76 -19.73 16 21 Si 1.02 22.73 26.63 -169.99 -4.53 18.20 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.25 -5.40 5.27 56.52 0.30 -5.10 16 25 C -0.18 -1.98 5.15 -90.62 -0.47 -2.45 16 26 C -0.18 -1.71 9.74 -26.70 -0.26 -1.97 16 27 C -0.17 -1.67 9.61 -26.70 -0.26 -1.92 16 28 H 0.07 1.35 7.02 -51.93 -0.36 0.99 16 29 H 0.06 0.89 7.13 -51.93 -0.37 0.52 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.37 4.36 7.56 45.56 0.34 4.71 16 32 H 0.07 1.04 8.12 -51.93 -0.42 0.61 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.42 8.82 3.19 -40.82 -0.13 8.69 16 35 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.12 2.54 7.13 -52.48 -0.37 2.16 16 40 H 0.29 7.06 8.73 -40.82 -0.36 6.70 16 41 H 0.11 1.12 8.11 -51.93 -0.42 0.70 16 42 H 0.10 0.94 6.37 -51.93 -0.33 0.61 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.10 1.10 7.59 -51.93 -0.39 0.71 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -27.90 363.33 -9.13 -37.02 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -5.46 Total: 20.15 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -4.60 Total: -18.43 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.32 Total: -40.93 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.33 Total: -21.49 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.53 Total: 18.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.90 -9.13 -37.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610357123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.934 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds