Wall clock time and date at job start Tue Mar 31 2020 16:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.46997 * 2 1 4 4 C 1.52996 * 109.47510 * 120.00439 * 2 1 3 5 5 N 1.46500 * 109.46920 * 298.44783 * 4 2 1 6 6 C 1.34781 * 120.00079 * 183.97506 * 5 4 2 7 7 O 1.21661 * 120.00221 * 4.87705 * 6 5 4 8 8 C 1.46887 * 119.99742 * 184.88471 * 6 5 4 9 9 C 1.36128 * 125.43421 * 173.89916 * 8 6 5 10 10 C 1.41700 * 107.74791 * 180.23786 * 9 8 6 11 11 C 1.40027 * 133.35033 * 179.81297 * 10 9 8 12 12 C 1.36572 * 119.83006 * 179.97438 * 11 10 9 13 13 C 1.38856 * 120.60142 * 0.02562 * 12 11 10 14 14 C 1.37845 * 120.63171 * 359.97313 * 13 12 11 15 15 C 1.39079 * 119.81839 * 0.02562 * 14 13 12 16 16 N 1.37834 * 133.16777 * 180.02562 * 15 14 13 17 17 C 1.36889 * 125.61982 * 359.94108 * 16 15 14 18 18 H 1.07999 * 119.99984 * 129.98435 * 17 16 15 19 19 C 1.39009 * 119.99836 * 309.97956 * 17 16 15 20 20 N 1.31353 * 119.99621 * 156.86784 * 19 17 16 21 21 Si 1.86796 * 120.00382 * 336.59344 * 19 17 16 22 22 H 1.48500 * 109.47221 * 185.45540 * 21 19 17 23 23 H 1.48498 * 109.47095 * 305.45753 * 21 19 17 24 24 H 1.48505 * 109.46916 * 65.45563 * 21 19 17 25 25 C 1.53004 * 109.47163 * 240.00247 * 2 1 3 26 26 C 1.52998 * 117.49576 * 128.74193 * 25 2 1 27 27 C 1.52999 * 117.49719 * 60.08663 * 25 2 1 28 28 H 1.08996 * 109.47188 * 305.11746 * 1 2 3 29 29 H 1.08993 * 109.47725 * 65.12055 * 1 2 3 30 30 H 1.09001 * 109.46896 * 185.12336 * 1 2 3 31 31 H 0.96701 * 114.00097 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47486 * 178.45235 * 4 2 1 33 33 H 1.09000 * 109.47423 * 58.44565 * 4 2 1 34 34 H 0.97009 * 120.00076 * 3.97641 * 5 4 2 35 35 H 1.07998 * 126.12533 * 0.02562 * 9 8 6 36 36 H 1.07997 * 120.08236 * 359.95355 * 11 10 9 37 37 H 1.08002 * 119.69864 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.68558 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.09399 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00533 * 359.72261 * 20 19 17 41 41 H 1.08996 * 115.55441 * 274.41611 * 25 2 1 42 42 H 1.08994 * 117.50472 * 0.02562 * 26 25 2 43 43 H 1.09000 * 117.49651 * 145.02276 * 26 25 2 44 44 H 1.09004 * 117.49878 * 214.98358 * 27 25 2 45 45 H 1.09006 * 117.50185 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.5825 -0.0095 2.4450 6 6 1.9795 -0.4191 3.6662 7 8 2.7869 -1.3230 3.7720 8 6 1.4370 0.2258 4.8694 9 6 1.6677 -0.1726 6.1504 10 6 0.9620 0.7058 7.0097 11 6 0.8241 0.7848 8.4009 12 6 0.0564 1.7704 8.9526 13 6 -0.5909 2.6971 8.1462 14 6 -0.4703 2.6398 6.7742 15 6 0.3060 1.6452 6.1891 16 7 0.6125 1.3350 4.8816 17 6 0.1693 2.0111 3.7769 18 1 0.8715 2.3277 3.0198 19 6 -1.1845 2.2900 3.6295 20 7 -1.5704 3.2850 2.8638 21 14 -2.4552 1.2451 4.5142 22 1 -3.8174 1.6593 4.0922 23 1 -2.2446 -0.1848 4.1731 24 1 -2.3137 1.4300 5.9809 25 6 2.0400 -0.7212 -1.2493 26 6 3.0762 0.0041 -2.1101 27 6 1.6374 -0.1482 -2.6096 28 1 -0.3633 0.5911 0.8406 29 1 -0.3634 0.4323 -0.9322 30 1 -0.3633 -1.0236 0.0918 31 1 2.9703 1.4237 -0.0004 32 1 3.1297 -0.7454 1.2353 33 1 1.6542 -1.7406 1.2632 34 1 0.9939 0.7566 2.3580 35 1 2.2764 -1.0104 6.4569 36 1 1.3233 0.0680 9.0359 37 1 -0.0481 1.8296 10.0259 38 1 -1.1947 3.4701 8.5982 39 1 -0.9780 3.3648 6.1552 40 1 -0.9106 3.8277 2.4044 41 1 2.1253 -1.8045 -1.1649 42 1 3.3949 0.9948 -1.7863 43 1 3.8431 -0.6021 -2.5923 44 1 1.4581 -0.8546 -3.4202 45 1 1.0088 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610357123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:34 Heat of formation + Delta-G solvation = -21.601556 kcal Electronic energy + Delta-G solvation = -28691.366746 eV Core-core repulsion = 24867.169740 eV Total energy + Delta-G solvation = -3824.197007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.45954 -40.86695 -39.77351 -37.75828 -36.45708 -35.65266 -35.13342 -33.00551 -32.22168 -30.75478 -29.97192 -27.93215 -26.34094 -25.11598 -23.44862 -23.18381 -22.70151 -21.74396 -21.29068 -20.73712 -20.56422 -18.42411 -18.12906 -17.61843 -17.18578 -16.86981 -16.49945 -16.41152 -16.21879 -15.61522 -15.44310 -15.11358 -15.02119 -14.85884 -14.66223 -14.27778 -14.09851 -13.73392 -13.63793 -13.60876 -13.41849 -13.02104 -12.87100 -12.47696 -12.33242 -12.21806 -12.19466 -12.05118 -11.90060 -11.52387 -11.49045 -11.37107 -11.15892 -11.09121 -10.86421 -10.39632 -10.13009 -9.42728 -8.93297 -8.55544 -6.69458 -0.02413 0.93034 1.20378 1.33193 1.37446 1.56984 2.10308 2.18170 2.33345 2.44760 2.76694 2.80885 3.17172 3.19265 3.48904 3.68762 3.84053 3.93745 4.06197 4.07661 4.18812 4.32264 4.33826 4.41392 4.50778 4.62220 4.64135 4.69921 4.72479 4.77712 4.83803 4.85581 4.98754 5.06471 5.14917 5.15787 5.20890 5.25553 5.27128 5.40560 5.43221 5.68569 5.76484 5.83810 6.00969 6.12040 6.39665 6.48852 6.64246 6.72369 7.18039 7.27814 8.07083 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.004268 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.489678 B = 6558.744266 C = 7626.880358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.161 3.839 3 O -0.565 6.565 4 C 0.093 3.907 5 N -0.715 5.715 6 C 0.586 3.414 7 O -0.579 6.579 8 C -0.044 4.044 9 C -0.159 4.159 10 C -0.146 4.146 11 C -0.077 4.077 12 C -0.150 4.150 13 C -0.112 4.112 14 C -0.127 4.127 15 C 0.052 3.948 16 N -0.294 5.294 17 C -0.450 4.450 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.843 5.843 21 Si 1.041 2.959 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.236 1.236 25 C -0.187 4.187 26 C -0.169 4.169 27 C -0.163 4.163 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.384 0.616 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.419 0.581 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.280 0.720 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -4.943 -3.187 6.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.120 3.880 3 O -0.373 6.373 4 C -0.031 4.031 5 N -0.374 5.374 6 C 0.374 3.626 7 O -0.461 6.461 8 C -0.157 4.157 9 C -0.187 4.187 10 C -0.151 4.151 11 C -0.096 4.096 12 C -0.169 4.169 13 C -0.132 4.132 14 C -0.147 4.147 15 C -0.061 4.061 16 N 0.039 4.961 17 C -0.577 4.577 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.469 5.469 21 Si 0.862 3.138 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.160 1.160 25 C -0.206 4.206 26 C -0.206 4.206 27 C -0.200 4.200 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.233 0.767 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.265 0.735 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.165 0.835 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.142 0.858 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.297 -5.387 -3.378 6.490 hybrid contribution 2.049 0.720 -0.870 2.340 sum 3.346 -4.667 -4.248 7.144 Atomic orbital electron populations 1.21765 0.92742 1.02862 1.02353 1.20784 0.94505 0.81557 0.91172 1.86623 1.27672 1.26265 1.96772 1.22152 1.00028 0.96522 0.84397 1.46689 1.50880 1.35003 1.04793 1.17320 0.80240 0.81951 0.83076 1.90677 1.35423 1.32514 1.87505 1.20720 1.05903 0.93726 0.95346 1.20772 1.05469 1.02602 0.89822 1.18408 1.03292 0.98705 0.94670 1.20615 0.98682 0.99020 0.91235 1.20876 0.99454 0.95816 1.00770 1.21131 1.00486 1.00292 0.91289 1.20231 1.00727 0.97871 0.95904 1.18992 1.03136 0.99706 0.84237 1.40284 1.33712 1.18139 1.04010 1.20326 0.94780 1.40619 1.01937 0.89790 1.27170 0.97962 0.95628 0.96747 1.70866 1.38906 1.11809 1.25335 0.84041 0.75424 0.75159 0.79152 1.19229 1.20796 1.15994 1.22839 1.06420 1.00189 0.91147 1.23084 0.92773 1.02190 1.02542 1.22943 0.98141 1.03016 0.95920 0.94504 0.90818 0.89751 0.76655 0.90925 0.90647 0.73491 0.83082 0.83875 0.82724 0.83512 0.88062 0.90962 0.85765 0.88430 0.86956 0.87044 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.53 71.98 0.61 -3.66 16 2 C 0.16 4.45 0.86 -10.79 -0.01 4.44 16 3 O -0.57 -17.01 11.86 -148.98 -1.77 -18.77 16 4 C 0.09 2.99 4.77 86.38 0.41 3.40 16 5 N -0.72 -29.40 5.14 -466.89 -2.40 -31.80 16 6 C 0.59 27.03 7.76 86.51 0.67 27.70 16 7 O -0.58 -27.67 16.84 -4.22 -0.07 -27.74 16 8 C -0.04 -2.10 6.77 39.91 0.27 -1.83 16 9 C -0.16 -7.01 10.55 22.63 0.24 -6.77 16 10 C -0.15 -6.19 6.16 -21.33 -0.13 -6.32 16 11 C -0.08 -2.58 10.06 22.31 0.22 -2.36 16 12 C -0.15 -4.49 9.97 22.03 0.22 -4.27 16 13 C -0.11 -3.75 10.02 22.32 0.22 -3.52 16 14 C -0.13 -5.38 7.19 22.38 0.16 -5.22 16 15 C 0.05 2.43 5.19 39.06 0.20 2.63 16 16 N -0.29 -14.53 2.23 -331.35 -0.74 -15.27 16 17 C -0.45 -22.95 7.66 84.09 0.64 -22.31 16 18 H 0.08 4.55 6.90 -2.91 -0.02 4.53 16 19 C 0.04 1.96 4.81 84.95 0.41 2.37 16 20 N -0.84 -43.88 13.69 21.67 0.30 -43.59 16 21 Si 1.04 47.01 26.63 68.60 1.83 48.84 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.24 -10.24 5.27 99.48 0.52 -9.71 16 25 C -0.19 -3.85 5.15 -10.79 -0.06 -3.90 16 26 C -0.17 -2.93 9.74 30.62 0.30 -2.64 16 27 C -0.16 -3.03 9.61 30.62 0.29 -2.73 16 28 H 0.04 1.40 7.02 -2.39 -0.02 1.38 16 29 H 0.07 2.07 7.13 -2.39 -0.02 2.05 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.38 9.19 7.56 -74.06 -0.56 8.63 16 32 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.42 18.50 3.19 -92.70 -0.30 18.21 16 35 H 0.15 6.01 8.06 -2.91 -0.02 5.99 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.10 4.50 7.13 -2.91 -0.02 4.48 16 40 H 0.28 14.55 8.73 -92.71 -0.81 13.74 16 41 H 0.12 2.26 8.11 -2.39 -0.02 2.24 16 42 H 0.10 1.74 6.37 -2.39 -0.02 1.72 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.09 1.84 7.59 -2.38 -0.02 1.82 16 Total: -1.00 -62.44 363.33 1.79 -60.65 By element: Atomic # 1 Polarization: 52.72 SS G_CDS: -0.04 Total: 52.67 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.69 Total: -24.99 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -2.84 Total: -90.65 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -1.84 Total: -46.52 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.83 Total: 48.84 kcal Total: -62.44 1.79 -60.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610357123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.052 kcal (2) G-P(sol) polarization free energy of solvation -62.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds