Wall clock time and date at job start Tue Mar 31 2020 14:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99823 * 2 1 4 4 C 1.52998 * 109.46747 * 125.00092 * 3 2 1 5 5 O 1.42905 * 109.47107 * 184.94451 * 4 3 2 6 6 C 1.42898 * 113.99948 * 184.94519 * 5 4 3 7 7 C 1.53006 * 109.46806 * 175.05547 * 6 5 4 8 8 N 1.46496 * 109.47322 * 63.71219 * 7 6 5 9 9 C 1.34781 * 120.00067 * 175.32238 * 8 7 6 10 10 O 1.21665 * 119.99593 * 3.94350 * 9 8 7 11 11 C 1.46892 * 119.99870 * 183.93970 * 9 8 7 12 12 C 1.36117 * 125.43045 * 183.36041 * 11 9 8 13 13 C 1.41708 * 107.74251 * 179.87905 * 12 11 9 14 14 C 1.40020 * 133.34694 * 180.14577 * 13 12 11 15 15 C 1.36577 * 119.82871 * 180.27307 * 14 13 12 16 16 C 1.38858 * 120.60202 * 0.02562 * 15 14 13 17 17 C 1.37847 * 120.62964 * 359.97211 * 16 15 14 18 18 C 1.39087 * 119.81481 * 0.02790 * 17 16 15 19 19 N 1.37838 * 133.16190 * 180.02562 * 18 17 16 20 20 C 1.36894 * 125.61929 * 359.97438 * 19 18 17 21 21 H 1.08001 * 119.99533 * 129.69511 * 20 19 18 22 22 C 1.39008 * 119.99863 * 309.69055 * 20 19 18 23 23 N 1.31340 * 120.00391 * 3.31101 * 22 20 19 24 24 Si 1.86808 * 119.99582 * 183.30404 * 22 20 19 25 25 H 1.48504 * 109.46704 * 95.00097 * 24 22 20 26 26 H 1.48501 * 109.46936 * 214.99444 * 24 22 20 27 27 H 1.48492 * 109.47196 * 334.99732 * 24 22 20 28 28 H 1.08001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00284 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00016 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46907 * 5.00138 * 3 2 1 32 32 H 1.08999 * 109.47354 * 245.00009 * 3 2 1 33 33 H 1.09005 * 109.47487 * 64.94556 * 4 3 2 34 34 H 1.09000 * 109.47372 * 304.94309 * 4 3 2 35 35 H 1.08999 * 109.47062 * 55.05705 * 6 5 4 36 36 H 1.08999 * 109.47237 * 295.05052 * 6 5 4 37 37 H 1.09004 * 109.46951 * 303.71515 * 7 6 5 38 38 H 1.08998 * 109.47204 * 183.71448 * 7 6 5 39 39 H 0.96999 * 119.99794 * 355.05511 * 8 7 6 40 40 H 1.07993 * 126.13184 * 359.97438 * 12 11 9 41 41 H 1.08002 * 120.08890 * 0.25479 * 14 13 12 42 42 H 1.08004 * 119.70221 * 180.02562 * 15 14 13 43 43 H 1.08002 * 119.68369 * 179.97438 * 16 15 14 44 44 H 1.08001 * 120.08809 * 179.97438 * 17 16 15 45 45 H 0.96997 * 120.00343 * 185.00497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.6656 2.6136 1.2497 6 6 4.6776 2.7105 2.2539 7 6 5.3651 4.0738 2.1552 8 7 4.3940 5.1324 2.4426 9 6 4.7968 6.4170 2.5070 10 8 5.9517 6.7057 2.2559 11 6 3.8413 7.4684 2.8801 12 6 4.1102 8.8023 2.9166 13 6 2.9275 9.4704 3.3205 14 6 2.6078 10.8177 3.5278 15 6 1.3499 11.1629 3.9326 16 6 0.3824 10.1891 4.1417 17 6 0.6734 8.8562 3.9442 18 6 1.9475 8.4802 3.5321 19 7 2.5279 7.2606 3.2569 20 6 1.9057 6.0442 3.3420 21 1 1.9586 5.3517 2.5150 22 6 1.2060 5.7005 4.4930 23 7 1.0868 6.5672 5.4726 24 14 0.4352 4.0058 4.6462 25 1 1.3661 3.1021 5.3687 26 1 -0.8400 4.1084 5.4002 27 1 0.1668 3.4598 3.2916 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 3.7931 0.5614 1.0471 34 1 2.4881 1.1478 2.1061 35 1 5.4139 1.9207 2.1051 36 1 4.2235 2.6031 3.2389 37 1 5.7622 4.2085 1.1490 38 1 6.1803 4.1228 2.8771 39 1 3.4605 4.9092 2.5828 40 1 5.0550 9.2681 2.6788 41 1 3.3540 11.5820 3.3683 42 1 1.1054 12.2029 4.0914 43 1 -0.6074 10.4787 4.4622 44 1 -0.0856 8.1060 4.1099 45 1 0.6621 6.3040 6.3040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611139024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:21 Heat of formation + Delta-G solvation = -9.078486 kcal Electronic energy + Delta-G solvation = -27805.925004 eV Core-core repulsion = 23982.271038 eV Total energy + Delta-G solvation = -3823.653966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.43943 -38.72804 -37.94732 -35.88647 -35.36724 -34.15620 -33.45383 -30.75478 -30.25620 -29.07076 -28.51501 -27.56101 -25.03555 -23.54281 -23.10263 -21.78361 -20.94787 -20.02721 -19.95923 -19.24658 -18.15649 -16.74179 -16.56773 -16.27612 -15.65613 -15.40792 -15.21009 -14.85900 -14.56637 -14.46941 -14.20149 -13.76310 -13.42234 -13.26962 -13.03339 -12.96067 -12.83682 -12.48357 -12.17575 -11.91548 -11.79490 -11.66207 -11.54920 -11.46631 -11.21105 -11.14717 -11.03530 -10.74032 -10.63388 -10.11891 -9.72954 -9.69424 -9.54843 -9.34575 -9.28918 -8.58852 -8.45160 -7.14406 -6.82665 -6.55169 -4.73724 1.88727 2.03606 2.77090 2.89936 2.94176 2.96184 3.18899 3.58198 3.68699 3.89806 4.31393 4.58425 4.63827 4.76456 4.88533 4.97518 5.07283 5.10312 5.23969 5.27490 5.31092 5.35471 5.66836 5.72307 5.78771 5.82058 5.88221 5.96914 5.99872 6.07649 6.20862 6.41022 6.46620 6.55243 6.62509 6.73702 6.85784 6.94131 7.04605 7.14341 7.16065 7.18174 7.52466 7.61313 7.69855 7.94726 7.97200 8.28878 8.35990 8.68584 9.01446 9.30322 10.15057 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.004059 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.355466 B = 6897.296393 C = 8261.887856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.096 4.096 4 C 0.066 3.934 5 O -0.382 6.382 6 C 0.050 3.950 7 C 0.122 3.878 8 N -0.723 5.723 9 C 0.595 3.405 10 O -0.562 6.562 11 C -0.014 4.014 12 C -0.164 4.164 13 C -0.136 4.136 14 C -0.087 4.087 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.051 4.051 18 C 0.112 3.888 19 N -0.265 5.265 20 C -0.373 4.373 21 H 0.107 0.893 22 C 0.063 3.937 23 N -0.820 5.820 24 Si 0.919 3.081 25 H -0.269 1.269 26 H -0.273 1.273 27 H -0.258 1.258 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.418 0.582 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 -10.041 -4.678 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.133 4.133 4 C -0.011 4.011 5 O -0.302 6.302 6 C -0.027 4.027 7 C -0.003 4.003 8 N -0.384 5.384 9 C 0.385 3.615 10 O -0.442 6.442 11 C -0.128 4.128 12 C -0.192 4.192 13 C -0.140 4.140 14 C -0.106 4.106 15 C -0.180 4.180 16 C -0.169 4.169 17 C -0.071 4.071 18 C -0.003 4.003 19 N 0.070 4.930 20 C -0.500 4.500 21 H 0.124 0.876 22 C -0.151 4.151 23 N -0.449 5.449 24 Si 0.742 3.258 25 H -0.195 1.195 26 H -0.198 1.198 27 H -0.182 1.182 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.264 0.736 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.134 0.866 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.328 -10.077 -4.754 11.147 hybrid contribution -0.753 -1.244 0.684 1.607 sum -1.081 -11.321 -4.070 12.079 Atomic orbital electron populations 1.23939 0.95971 1.02121 1.00413 1.22790 0.96028 0.97956 1.00539 1.20672 0.98247 0.96040 0.98322 1.22415 0.94976 0.85376 0.98316 1.87942 1.53183 1.32504 1.56534 1.22799 0.90663 0.97325 0.91865 1.21274 0.92021 0.85034 1.01924 1.46633 1.13982 1.05620 1.72154 1.17269 0.86524 0.81744 0.75989 1.90707 1.18767 1.82899 1.51790 1.20156 0.85512 0.94201 1.12944 1.20405 0.97821 0.91076 1.09886 1.18062 0.94543 0.93128 1.08290 1.20050 0.96021 0.93598 1.00956 1.20270 0.94056 0.97931 1.05715 1.20579 0.98589 0.92566 1.05144 1.20079 0.94544 0.94836 0.97627 1.18335 0.94105 0.84397 1.03459 1.39899 1.04978 1.04270 1.43886 1.19467 1.34663 0.92983 1.02930 0.87617 1.25706 0.95268 0.99370 0.94753 1.69923 1.36620 1.33850 1.04501 0.86010 0.79119 0.80895 0.79736 1.19466 1.19809 1.18154 0.88389 0.88240 0.87329 0.90227 0.90181 0.93321 0.93233 0.91888 0.92385 0.91215 0.90247 0.73592 0.84994 0.87793 0.87966 0.87730 0.86553 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 14.32 29.01 0.42 -1.31 16 2 C -0.16 -1.45 9.52 -36.03 -0.34 -1.80 16 3 C -0.10 -1.05 6.03 -27.88 -0.17 -1.21 16 4 C 0.07 0.76 5.93 37.16 0.22 0.98 16 5 O -0.38 -5.54 10.19 -35.23 -0.36 -5.90 16 6 C 0.05 0.66 6.10 37.16 0.23 0.89 16 7 C 0.12 1.93 6.07 -4.04 -0.02 1.90 16 8 N -0.72 -14.47 5.40 -61.55 -0.33 -14.80 16 9 C 0.60 13.79 7.78 -12.76 -0.10 13.69 16 10 O -0.56 -13.67 16.85 5.22 0.09 -13.58 16 11 C -0.01 -0.34 6.77 -82.25 -0.56 -0.89 16 12 C -0.16 -3.92 10.55 -39.02 -0.41 -4.33 16 13 C -0.14 -3.24 6.16 -106.89 -0.66 -3.90 16 14 C -0.09 -1.82 10.06 -39.51 -0.40 -2.22 16 15 C -0.16 -3.13 9.97 -39.95 -0.40 -3.53 16 16 C -0.15 -3.04 10.02 -39.50 -0.40 -3.44 16 17 C -0.05 -1.20 8.59 -39.41 -0.34 -1.54 16 18 C 0.11 2.82 6.02 -83.84 -0.50 2.31 16 19 N -0.27 -6.72 2.79 -56.08 -0.16 -6.88 16 20 C -0.37 -8.99 7.84 -15.01 -0.12 -9.11 16 21 H 0.11 2.43 6.11 -52.49 -0.32 2.11 16 22 C 0.06 1.47 5.13 -17.48 -0.09 1.38 16 23 N -0.82 -20.39 10.64 55.50 0.59 -19.80 16 24 Si 0.92 17.62 29.56 -169.99 -5.02 12.60 16 25 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 28 H 0.10 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.10 0.95 7.84 -52.48 -0.41 0.54 16 30 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.08 0.98 7.79 -51.93 -0.40 0.57 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.42 8.55 4.16 -40.82 -0.17 8.38 16 40 H 0.13 2.91 8.06 -52.49 -0.42 2.48 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 43 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.12 2.79 6.91 -52.49 -0.36 2.43 16 45 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -29.10 380.01 -9.41 -38.50 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -6.30 Total: 16.27 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -3.64 Total: -12.14 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.10 Total: -41.49 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.27 Total: -19.48 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.02 Total: 12.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.10 -9.41 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611139024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.424 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds