Wall clock time and date at job start Tue Mar 31 2020 14:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99823 * 2 1 4 4 C 1.52998 * 109.46747 * 125.00092 * 3 2 1 5 5 O 1.42905 * 109.47107 * 184.94451 * 4 3 2 6 6 C 1.42898 * 113.99948 * 184.94519 * 5 4 3 7 7 C 1.53006 * 109.46806 * 175.05547 * 6 5 4 8 8 N 1.46496 * 109.47322 * 63.71219 * 7 6 5 9 9 C 1.34781 * 120.00067 * 175.32238 * 8 7 6 10 10 O 1.21665 * 119.99593 * 3.94350 * 9 8 7 11 11 C 1.46892 * 119.99870 * 183.93970 * 9 8 7 12 12 C 1.36117 * 125.43045 * 183.36041 * 11 9 8 13 13 C 1.41708 * 107.74251 * 179.87905 * 12 11 9 14 14 C 1.40020 * 133.34694 * 180.14577 * 13 12 11 15 15 C 1.36577 * 119.82871 * 180.27307 * 14 13 12 16 16 C 1.38858 * 120.60202 * 0.02562 * 15 14 13 17 17 C 1.37847 * 120.62964 * 359.97211 * 16 15 14 18 18 C 1.39087 * 119.81481 * 0.02790 * 17 16 15 19 19 N 1.37838 * 133.16190 * 180.02562 * 18 17 16 20 20 C 1.36894 * 125.61929 * 359.97438 * 19 18 17 21 21 H 1.08001 * 119.99533 * 129.69511 * 20 19 18 22 22 C 1.39008 * 119.99863 * 309.69055 * 20 19 18 23 23 N 1.31340 * 120.00391 * 3.31101 * 22 20 19 24 24 Si 1.86808 * 119.99582 * 183.30404 * 22 20 19 25 25 H 1.48504 * 109.46704 * 95.00097 * 24 22 20 26 26 H 1.48501 * 109.46936 * 214.99444 * 24 22 20 27 27 H 1.48492 * 109.47196 * 334.99732 * 24 22 20 28 28 H 1.08001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00284 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00016 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46907 * 5.00138 * 3 2 1 32 32 H 1.08999 * 109.47354 * 245.00009 * 3 2 1 33 33 H 1.09005 * 109.47487 * 64.94556 * 4 3 2 34 34 H 1.09000 * 109.47372 * 304.94309 * 4 3 2 35 35 H 1.08999 * 109.47062 * 55.05705 * 6 5 4 36 36 H 1.08999 * 109.47237 * 295.05052 * 6 5 4 37 37 H 1.09004 * 109.46951 * 303.71515 * 7 6 5 38 38 H 1.08998 * 109.47204 * 183.71448 * 7 6 5 39 39 H 0.96999 * 119.99794 * 355.05511 * 8 7 6 40 40 H 1.07993 * 126.13184 * 359.97438 * 12 11 9 41 41 H 1.08002 * 120.08890 * 0.25479 * 14 13 12 42 42 H 1.08004 * 119.70221 * 180.02562 * 15 14 13 43 43 H 1.08002 * 119.68369 * 179.97438 * 16 15 14 44 44 H 1.08001 * 120.08809 * 179.97438 * 17 16 15 45 45 H 0.96997 * 120.00343 * 185.00497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.6656 2.6136 1.2497 6 6 4.6776 2.7105 2.2539 7 6 5.3651 4.0738 2.1552 8 7 4.3940 5.1324 2.4426 9 6 4.7968 6.4170 2.5070 10 8 5.9517 6.7057 2.2559 11 6 3.8413 7.4684 2.8801 12 6 4.1102 8.8023 2.9166 13 6 2.9275 9.4704 3.3205 14 6 2.6078 10.8177 3.5278 15 6 1.3499 11.1629 3.9326 16 6 0.3824 10.1891 4.1417 17 6 0.6734 8.8562 3.9442 18 6 1.9475 8.4802 3.5321 19 7 2.5279 7.2606 3.2569 20 6 1.9057 6.0442 3.3420 21 1 1.9586 5.3517 2.5150 22 6 1.2060 5.7005 4.4930 23 7 1.0868 6.5672 5.4726 24 14 0.4352 4.0058 4.6462 25 1 1.3661 3.1021 5.3687 26 1 -0.8400 4.1084 5.4002 27 1 0.1668 3.4598 3.2916 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 3.7931 0.5614 1.0471 34 1 2.4881 1.1478 2.1061 35 1 5.4139 1.9207 2.1051 36 1 4.2235 2.6031 3.2389 37 1 5.7622 4.2085 1.1490 38 1 6.1803 4.1228 2.8771 39 1 3.4605 4.9092 2.5828 40 1 5.0550 9.2681 2.6788 41 1 3.3540 11.5820 3.3683 42 1 1.1054 12.2029 4.0914 43 1 -0.6074 10.4787 4.4622 44 1 -0.0856 8.1060 4.1099 45 1 0.6621 6.3040 6.3040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611139024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:20 Heat of formation + Delta-G solvation = -24.498314 kcal Electronic energy + Delta-G solvation = -27806.593658 eV Core-core repulsion = 23982.271038 eV Total energy + Delta-G solvation = -3824.322620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20617 -40.28542 -39.13906 -37.59304 -36.38558 -35.57986 -35.13595 -32.51345 -31.50994 -30.56955 -29.92473 -29.01911 -26.84689 -25.04991 -23.97360 -23.17536 -22.69249 -21.71788 -21.03293 -20.69173 -19.90102 -18.19611 -17.75362 -17.46681 -17.39261 -16.74400 -16.52562 -16.30735 -16.14467 -15.94781 -15.58949 -15.16334 -14.77213 -14.71785 -14.57084 -14.49974 -14.20295 -13.83131 -13.59020 -13.52045 -13.38897 -13.23703 -12.86040 -12.67309 -12.43619 -12.31530 -12.18895 -12.03218 -11.95768 -11.83545 -11.43173 -11.15519 -11.04634 -10.62293 -10.36124 -10.29469 -10.06306 -8.91521 -8.61115 -8.31947 -6.58542 0.13050 1.11802 1.32135 1.32874 1.34069 1.41790 1.46628 2.05974 2.28870 2.51229 2.66372 2.81384 2.86451 3.36572 3.83854 4.00976 4.04002 4.11788 4.17956 4.24191 4.26635 4.37102 4.44110 4.44747 4.46965 4.55068 4.65053 4.75662 4.81516 4.87881 4.89943 5.01319 5.02504 5.06803 5.08150 5.21449 5.37252 5.46036 5.49377 5.68748 5.77576 5.84632 5.91502 5.97769 6.19870 6.21247 6.25297 6.57872 6.58522 6.89782 7.26752 7.49563 8.38612 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.004059 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.355466 B = 6897.296393 C = 8261.887856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C -0.097 4.097 4 C 0.062 3.938 5 O -0.410 6.410 6 C 0.055 3.945 7 C 0.115 3.885 8 N -0.717 5.717 9 C 0.589 3.411 10 O -0.583 6.583 11 C -0.042 4.042 12 C -0.176 4.176 13 C -0.157 4.157 14 C -0.092 4.092 15 C -0.153 4.153 16 C -0.137 4.137 17 C -0.080 4.080 18 C 0.081 3.919 19 N -0.279 5.279 20 C -0.389 4.389 21 H 0.109 0.891 22 C 0.027 3.973 23 N -0.853 5.853 24 Si 0.982 3.018 25 H -0.261 1.261 26 H -0.271 1.271 27 H -0.249 1.249 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.416 0.584 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 -10.913 -4.526 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.175 4.175 3 C -0.134 4.134 4 C -0.014 4.014 5 O -0.330 6.330 6 C -0.021 4.021 7 C -0.009 4.009 8 N -0.375 5.375 9 C 0.378 3.622 10 O -0.465 6.465 11 C -0.156 4.156 12 C -0.204 4.204 13 C -0.162 4.162 14 C -0.111 4.111 15 C -0.172 4.172 16 C -0.157 4.157 17 C -0.100 4.100 18 C -0.033 4.033 19 N 0.056 4.944 20 C -0.515 4.515 21 H 0.126 0.874 22 C -0.184 4.184 23 N -0.482 5.482 24 Si 0.802 3.198 25 H -0.185 1.185 26 H -0.196 1.196 27 H -0.173 1.173 28 H 0.135 0.865 29 H 0.107 0.893 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.261 0.739 40 H 0.160 0.840 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.119 0.881 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.844 -10.968 -4.615 11.929 hybrid contribution -0.635 -0.863 0.619 1.237 sum -1.479 -11.831 -3.996 12.575 Atomic orbital electron populations 1.24091 0.96166 1.02576 1.00196 1.22868 0.96083 0.97884 1.00676 1.20677 0.97936 0.96315 0.98452 1.22587 0.95647 0.84869 0.98320 1.87909 1.53782 1.34400 1.56872 1.22811 0.91283 0.96420 0.91604 1.21573 0.91814 0.85373 1.02095 1.46664 1.14614 1.05516 1.70718 1.17248 0.86067 0.82626 0.76228 1.90668 1.19262 1.83367 1.53202 1.20561 0.86029 0.95221 1.13836 1.20649 0.98449 0.91233 1.10054 1.18451 0.94206 0.94535 1.09006 1.20470 0.97524 0.92878 1.00216 1.20747 0.92955 0.99844 1.03630 1.21027 1.00343 0.91479 1.02832 1.20144 0.93887 0.96068 0.99914 1.18815 0.95210 0.84881 1.04426 1.40104 1.05221 1.04758 1.44319 1.19744 1.35186 0.93068 1.03542 0.87432 1.26544 0.95080 1.02767 0.93959 1.70032 1.37494 1.35648 1.05016 0.85075 0.78222 0.76433 0.80047 1.18537 1.19578 1.17260 0.86516 0.89328 0.85173 0.92467 0.89882 0.90604 0.93455 0.87990 0.92508 0.91206 0.89390 0.73882 0.83973 0.84826 0.83558 0.84534 0.88110 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 14.32 67.78 0.97 -2.32 16 2 C -0.16 -2.66 9.52 25.65 0.24 -2.42 16 3 C -0.10 -2.02 6.03 29.85 0.18 -1.84 16 4 C 0.06 1.32 5.93 71.98 0.43 1.75 16 5 O -0.41 -11.44 10.19 -148.98 -1.52 -12.95 16 6 C 0.06 1.36 6.10 71.98 0.44 1.80 16 7 C 0.11 3.58 6.07 86.38 0.52 4.10 16 8 N -0.72 -29.29 5.40 -466.87 -2.52 -31.81 16 9 C 0.59 28.22 7.78 86.51 0.67 28.89 16 10 O -0.58 -29.13 16.85 -4.24 -0.07 -29.20 16 11 C -0.04 -2.17 6.77 39.91 0.27 -1.90 16 12 C -0.18 -8.67 10.55 22.63 0.24 -8.43 16 13 C -0.16 -7.63 6.16 -21.34 -0.13 -7.76 16 14 C -0.09 -3.69 10.06 22.31 0.22 -3.46 16 15 C -0.15 -5.52 9.97 22.03 0.22 -5.30 16 16 C -0.14 -5.37 10.02 22.33 0.22 -5.14 16 17 C -0.08 -3.82 8.59 22.38 0.19 -3.63 16 18 C 0.08 4.19 6.02 39.06 0.24 4.43 16 19 N -0.28 -14.67 2.79 -331.35 -0.93 -15.59 16 20 C -0.39 -19.35 7.84 84.09 0.66 -18.69 16 21 H 0.11 5.14 6.11 -2.91 -0.02 5.12 16 22 C 0.03 1.28 5.13 84.95 0.44 1.72 16 23 N -0.85 -43.42 10.64 21.67 0.23 -43.19 16 24 Si 0.98 36.23 29.56 68.60 2.03 38.26 16 25 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 26 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 27 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 28 H 0.12 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.09 1.67 7.84 -2.91 -0.02 1.65 16 30 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.06 1.43 7.79 -2.39 -0.02 1.41 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.20 8.12 -2.38 -0.02 1.19 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.72 8.12 -2.39 -0.02 1.70 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.42 17.45 4.16 -92.71 -0.39 17.07 16 40 H 0.14 6.45 8.06 -2.91 -0.02 6.42 16 41 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 44 H 0.10 5.00 6.91 -2.91 -0.02 4.98 16 45 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -65.32 380.01 3.86 -61.47 By element: Atomic # 1 Polarization: 50.63 SS G_CDS: 0.61 Total: 51.24 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 6.03 Total: -18.21 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -3.21 Total: -90.59 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.59 Total: -42.16 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -65.32 3.86 -61.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611139024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.968 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds