Wall clock time and date at job start Tue Mar 31 2020 15:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47241 * 2 1 4 4 H 1.08993 * 110.88979 * 308.88508 * 3 2 1 5 5 C 1.55131 * 110.93600 * 72.95844 * 3 2 1 6 6 N 1.47425 * 104.72312 * 155.28682 * 5 3 2 7 7 C 1.34777 * 125.64819 * 155.81490 * 6 5 3 8 8 O 1.21664 * 119.99952 * 4.83742 * 7 6 5 9 9 C 1.46888 * 119.99608 * 184.83256 * 7 6 5 10 10 C 1.36123 * 125.44168 * 354.24092 * 9 7 6 11 11 C 1.41701 * 107.74929 * 179.97438 * 10 9 7 12 12 C 1.40019 * 133.34951 * 180.02562 * 11 10 9 13 13 C 1.36582 * 119.83086 * 179.97438 * 12 11 10 14 14 C 1.38859 * 120.59763 * 359.97438 * 13 12 11 15 15 C 1.37840 * 120.63304 * 0.02562 * 14 13 12 16 16 C 1.39093 * 119.81593 * 359.71110 * 15 14 13 17 17 N 1.37833 * 133.15923 * 179.56635 * 16 15 14 18 18 C 1.36889 * 125.61826 * 0.75672 * 17 16 15 19 19 H 1.08004 * 120.00193 * 142.78676 * 18 17 16 20 20 C 1.39010 * 120.00110 * 322.78350 * 18 17 16 21 21 N 1.31347 * 120.00073 * 341.44336 * 20 18 17 22 22 Si 1.86798 * 120.00160 * 161.71859 * 20 18 17 23 23 H 1.48499 * 109.47375 * 179.72491 * 22 20 18 24 24 H 1.48500 * 109.47172 * 299.72853 * 22 20 18 25 25 H 1.48502 * 109.47051 * 59.72504 * 22 20 18 26 26 C 1.47030 * 108.70262 * 335.55453 * 6 5 3 27 27 C 1.54321 * 107.26818 * 1.28448 * 26 6 5 28 28 H 1.08996 * 110.72084 * 140.55718 * 27 26 6 29 29 O 1.42899 * 110.72312 * 263.65240 * 27 26 6 30 30 H 1.09001 * 109.46783 * 299.99975 * 1 2 3 31 31 H 1.09008 * 109.47071 * 59.99377 * 1 2 3 32 32 H 1.08998 * 109.47647 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47145 * 240.00426 * 2 1 3 34 34 H 1.08995 * 109.47358 * 120.00411 * 2 1 3 35 35 H 1.09005 * 110.49893 * 36.44966 * 5 3 2 36 36 H 1.08994 * 110.34533 * 274.05127 * 5 3 2 37 37 H 1.08001 * 126.12478 * 359.95641 * 10 9 7 38 38 H 1.07996 * 120.09045 * 0.02562 * 12 11 10 39 39 H 1.07999 * 119.70192 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.68159 * 179.97438 * 14 13 12 41 41 H 1.08002 * 120.09344 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00605 * 176.26646 * 21 20 18 43 43 H 1.08998 * 109.88367 * 120.70244 * 26 6 5 44 44 H 1.08992 * 109.87925 * 241.86710 * 26 6 5 45 45 H 0.96703 * 113.99577 * 298.54946 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5669 2.0220 -0.7926 5 6 1.8245 2.1067 1.3853 6 7 2.8409 3.1724 1.4520 7 6 2.7674 4.2813 2.2146 8 8 1.8431 4.4243 2.9927 9 6 3.8034 5.3169 2.1064 10 6 4.9379 5.2236 1.3599 11 6 5.6654 6.4280 1.5272 12 6 6.8823 6.8949 1.0156 13 6 7.3370 8.1336 1.3680 14 6 6.6028 8.9371 2.2303 15 6 5.4021 8.4995 2.7468 16 6 4.9158 7.2438 2.3981 17 7 3.7819 6.5418 2.7463 18 6 2.7938 6.9874 3.5823 19 1 1.7617 6.7455 3.3756 20 6 3.1187 7.7511 4.6975 21 7 4.3477 7.7469 5.1609 22 14 1.8058 8.7772 5.5417 23 1 2.4024 9.4880 6.7009 24 1 1.2588 9.7688 4.5810 25 1 0.7123 7.8905 6.0141 26 6 3.9509 2.8223 0.5537 27 6 3.5858 1.4858 -0.1262 28 1 3.8872 1.4910 -1.1736 29 8 4.1840 0.3872 0.5646 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.9814 1.3822 2.1845 36 1 0.8233 2.5328 1.4496 37 1 5.2311 4.3822 0.7497 38 1 7.4596 6.2774 0.3434 39 1 8.2757 8.4918 0.9718 40 1 6.9765 9.9140 2.4994 41 1 4.8383 9.1315 3.4170 42 1 4.5874 8.3209 5.9052 43 1 4.0770 3.5994 -0.2002 44 1 4.8702 2.7072 1.1278 45 1 5.1506 0.4111 0.5791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611176540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:00 Heat of formation + Delta-G solvation = -14.301728 kcal Electronic energy + Delta-G solvation = -28445.889241 eV Core-core repulsion = 24622.008779 eV Total energy + Delta-G solvation = -3823.880462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.61009 -39.61552 -37.66550 -35.81226 -35.21160 -34.20467 -33.47039 -30.74309 -29.67760 -28.97113 -28.69671 -27.36396 -24.87184 -24.67870 -22.59959 -22.01641 -20.88073 -20.10742 -19.80463 -19.14382 -17.93071 -17.41157 -16.18527 -15.63334 -15.41255 -15.34076 -14.81399 -14.77671 -14.61393 -14.39473 -13.93177 -13.64632 -13.32569 -13.14957 -12.90724 -12.88997 -12.61945 -12.37839 -12.28012 -12.05738 -11.78894 -11.68728 -11.59748 -11.25614 -11.15054 -10.97220 -10.89819 -10.72695 -10.59403 -10.37430 -10.25278 -10.13861 -9.73729 -9.14134 -9.06097 -8.61810 -8.28379 -7.16462 -6.83080 -6.52890 -4.37395 1.84362 2.78465 3.06790 3.07915 3.09758 3.16510 3.24466 3.89039 3.98998 4.24526 4.36777 4.49379 4.67955 4.76810 4.82487 5.10466 5.11630 5.12935 5.33105 5.35217 5.42138 5.52366 5.70585 5.72555 5.75604 5.84208 5.89975 5.96997 5.97494 6.02948 6.12689 6.14021 6.30902 6.32588 6.54588 6.60125 6.74954 6.90202 7.04377 7.11253 7.20218 7.49594 7.50702 7.59256 7.69132 7.86466 7.99650 8.12255 8.44823 8.75008 8.97251 9.34481 10.24556 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013106 B = 0.004181 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.903676 B = 6695.604010 C = 8510.789902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C -0.095 4.095 4 H 0.095 0.905 5 C 0.121 3.879 6 N -0.616 5.616 7 C 0.602 3.398 8 O -0.530 6.530 9 C -0.022 4.022 10 C -0.222 4.222 11 C -0.124 4.124 12 C -0.094 4.094 13 C -0.155 4.155 14 C -0.156 4.156 15 C -0.046 4.046 16 C 0.081 3.919 17 N -0.227 5.227 18 C -0.332 4.332 19 H 0.117 0.883 20 C 0.051 3.949 21 N -0.820 5.820 22 Si 0.929 3.071 23 H -0.277 1.277 24 H -0.265 1.265 25 H -0.264 1.264 26 C 0.070 3.930 27 C 0.092 3.908 28 H 0.077 0.923 29 O -0.556 6.556 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.281 0.719 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -9.629 -10.655 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.114 4.114 4 H 0.113 0.887 5 C -0.001 4.001 6 N -0.352 5.352 7 C 0.394 3.606 8 O -0.406 6.406 9 C -0.140 4.140 10 C -0.250 4.250 11 C -0.129 4.129 12 C -0.113 4.113 13 C -0.174 4.174 14 C -0.177 4.177 15 C -0.066 4.066 16 C -0.033 4.033 17 N 0.113 4.887 18 C -0.461 4.461 19 H 0.134 0.866 20 C -0.161 4.161 21 N -0.449 5.449 22 Si 0.753 3.247 23 H -0.202 1.202 24 H -0.190 1.190 25 H -0.188 1.188 26 C -0.054 4.054 27 C 0.032 3.968 28 H 0.094 0.906 29 O -0.362 6.362 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.122 -9.491 -9.604 13.549 hybrid contribution 0.296 0.690 0.563 0.938 sum -0.826 -8.802 -9.041 12.645 Atomic orbital electron populations 1.21848 0.95969 1.01561 1.02010 1.21248 0.95147 0.94599 1.02969 1.22579 0.93170 0.97644 0.97963 0.88700 1.22216 0.92698 0.89085 0.96140 1.47957 1.21313 1.21166 1.44812 1.16921 0.84774 0.79726 0.79145 1.90784 1.35394 1.78125 1.36292 1.19471 0.98389 0.88608 1.07487 1.20871 0.96086 0.99424 1.08581 1.17964 0.96576 0.95761 1.02561 1.19994 0.94961 0.95776 1.00548 1.20264 0.99874 0.95410 1.01863 1.20536 0.95925 0.99624 1.01617 1.20155 0.95316 0.93805 0.97274 1.18147 0.90588 0.94579 1.00021 1.39937 1.14182 1.07192 1.27400 1.19996 0.88899 1.32833 1.04361 0.86594 1.25640 0.97682 0.97428 0.95385 1.70030 1.19186 1.32768 1.22940 0.85945 0.80424 0.79679 0.78659 1.20185 1.18955 1.18848 1.23166 0.91330 0.96847 0.94028 1.22896 0.94031 0.85134 0.94709 0.90552 1.86494 1.24766 1.46179 1.78722 0.92459 0.92836 0.92775 0.91745 0.90838 0.91418 0.90664 0.84546 0.87993 0.88041 0.87759 0.86829 0.90789 0.89725 0.90334 0.77233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.82 37.16 0.36 -1.00 16 2 C -0.10 -0.96 4.92 -26.73 -0.13 -1.10 16 3 C -0.09 -1.02 2.95 -88.35 -0.26 -1.28 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.12 1.77 5.84 -2.41 -0.01 1.76 16 6 N -0.62 -10.76 3.33 -171.84 -0.57 -11.33 16 7 C 0.60 13.84 7.80 -12.76 -0.10 13.74 16 8 O -0.53 -13.91 15.30 5.22 0.08 -13.83 16 9 C -0.02 -0.54 6.75 -82.25 -0.56 -1.10 16 10 C -0.22 -4.79 9.29 -39.02 -0.36 -5.15 16 11 C -0.12 -2.87 6.16 -106.89 -0.66 -3.53 16 12 C -0.09 -1.88 10.06 -39.51 -0.40 -2.28 16 13 C -0.16 -2.99 9.97 -39.95 -0.40 -3.39 16 14 C -0.16 -3.25 10.02 -39.50 -0.40 -3.64 16 15 C -0.05 -1.11 8.51 -39.41 -0.34 -1.45 16 16 C 0.08 2.10 6.10 -83.84 -0.51 1.59 16 17 N -0.23 -6.17 2.84 -56.08 -0.16 -6.33 16 18 C -0.33 -9.23 8.80 -15.01 -0.13 -9.36 16 19 H 0.12 3.28 6.94 -52.48 -0.36 2.92 16 20 C 0.05 1.33 4.41 -17.47 -0.08 1.26 16 21 N -0.82 -22.08 10.76 55.50 0.60 -21.48 16 22 Si 0.93 20.04 29.59 -169.99 -5.03 15.00 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 25 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 26 C 0.07 0.92 4.73 -3.06 -0.01 0.91 16 27 C 0.09 0.92 4.07 -24.90 -0.10 0.82 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 O -0.56 -5.56 12.26 -35.23 -0.43 -5.99 16 30 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 31 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.79 7.56 -51.93 -0.39 0.39 16 35 H 0.07 1.03 7.91 -51.93 -0.41 0.62 16 36 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 37 H 0.14 2.34 4.22 -52.49 -0.22 2.12 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.11 2.82 6.31 -52.49 -0.33 2.49 16 42 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.08 1.08 6.69 -51.93 -0.35 0.74 16 44 H 0.08 1.04 7.01 -51.93 -0.36 0.67 16 45 H 0.38 2.38 9.09 45.56 0.41 2.79 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -33.03 360.40 -9.52 -42.56 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.36 Total: 9.17 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -4.08 Total: -13.20 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.13 Total: -39.14 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.35 Total: -19.82 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.03 -9.52 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.254 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds