Wall clock time and date at job start Tue Mar 31 2020 15:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47241 * 2 1 4 4 H 1.08993 * 110.88979 * 308.88508 * 3 2 1 5 5 C 1.55131 * 110.93600 * 72.95844 * 3 2 1 6 6 N 1.47425 * 104.72312 * 155.28682 * 5 3 2 7 7 C 1.34777 * 125.64819 * 155.81490 * 6 5 3 8 8 O 1.21664 * 119.99952 * 4.83742 * 7 6 5 9 9 C 1.46888 * 119.99608 * 184.83256 * 7 6 5 10 10 C 1.36123 * 125.44168 * 354.24092 * 9 7 6 11 11 C 1.41701 * 107.74929 * 179.97438 * 10 9 7 12 12 C 1.40019 * 133.34951 * 180.02562 * 11 10 9 13 13 C 1.36582 * 119.83086 * 179.97438 * 12 11 10 14 14 C 1.38859 * 120.59763 * 359.97438 * 13 12 11 15 15 C 1.37840 * 120.63304 * 0.02562 * 14 13 12 16 16 C 1.39093 * 119.81593 * 359.71110 * 15 14 13 17 17 N 1.37833 * 133.15923 * 179.56635 * 16 15 14 18 18 C 1.36889 * 125.61826 * 0.75672 * 17 16 15 19 19 H 1.08004 * 120.00193 * 142.78676 * 18 17 16 20 20 C 1.39010 * 120.00110 * 322.78350 * 18 17 16 21 21 N 1.31347 * 120.00073 * 341.44336 * 20 18 17 22 22 Si 1.86798 * 120.00160 * 161.71859 * 20 18 17 23 23 H 1.48499 * 109.47375 * 179.72491 * 22 20 18 24 24 H 1.48500 * 109.47172 * 299.72853 * 22 20 18 25 25 H 1.48502 * 109.47051 * 59.72504 * 22 20 18 26 26 C 1.47030 * 108.70262 * 335.55453 * 6 5 3 27 27 C 1.54321 * 107.26818 * 1.28448 * 26 6 5 28 28 H 1.08996 * 110.72084 * 140.55718 * 27 26 6 29 29 O 1.42899 * 110.72312 * 263.65240 * 27 26 6 30 30 H 1.09001 * 109.46783 * 299.99975 * 1 2 3 31 31 H 1.09008 * 109.47071 * 59.99377 * 1 2 3 32 32 H 1.08998 * 109.47647 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47145 * 240.00426 * 2 1 3 34 34 H 1.08995 * 109.47358 * 120.00411 * 2 1 3 35 35 H 1.09005 * 110.49893 * 36.44966 * 5 3 2 36 36 H 1.08994 * 110.34533 * 274.05127 * 5 3 2 37 37 H 1.08001 * 126.12478 * 359.95641 * 10 9 7 38 38 H 1.07996 * 120.09045 * 0.02562 * 12 11 10 39 39 H 1.07999 * 119.70192 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.68159 * 179.97438 * 14 13 12 41 41 H 1.08002 * 120.09344 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00605 * 176.26646 * 21 20 18 43 43 H 1.08998 * 109.88367 * 120.70244 * 26 6 5 44 44 H 1.08992 * 109.87925 * 241.86710 * 26 6 5 45 45 H 0.96703 * 113.99577 * 298.54946 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5669 2.0220 -0.7926 5 6 1.8245 2.1067 1.3853 6 7 2.8409 3.1724 1.4520 7 6 2.7674 4.2813 2.2146 8 8 1.8431 4.4243 2.9927 9 6 3.8034 5.3169 2.1064 10 6 4.9379 5.2236 1.3599 11 6 5.6654 6.4280 1.5272 12 6 6.8823 6.8949 1.0156 13 6 7.3370 8.1336 1.3680 14 6 6.6028 8.9371 2.2303 15 6 5.4021 8.4995 2.7468 16 6 4.9158 7.2438 2.3981 17 7 3.7819 6.5418 2.7463 18 6 2.7938 6.9874 3.5823 19 1 1.7617 6.7455 3.3756 20 6 3.1187 7.7511 4.6975 21 7 4.3477 7.7469 5.1609 22 14 1.8058 8.7772 5.5417 23 1 2.4024 9.4880 6.7009 24 1 1.2588 9.7688 4.5810 25 1 0.7123 7.8905 6.0141 26 6 3.9509 2.8223 0.5537 27 6 3.5858 1.4858 -0.1262 28 1 3.8872 1.4910 -1.1736 29 8 4.1840 0.3872 0.5646 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.9814 1.3822 2.1845 36 1 0.8233 2.5328 1.4496 37 1 5.2311 4.3822 0.7497 38 1 7.4596 6.2774 0.3434 39 1 8.2757 8.4918 0.9718 40 1 6.9765 9.9140 2.4994 41 1 4.8383 9.1315 3.4170 42 1 4.5874 8.3209 5.9052 43 1 4.0770 3.5994 -0.2002 44 1 4.8702 2.7072 1.1278 45 1 5.1506 0.4111 0.5791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611176540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:59 Heat of formation + Delta-G solvation = -36.387841 kcal Electronic energy + Delta-G solvation = -28446.846967 eV Core-core repulsion = 24622.008779 eV Total energy + Delta-G solvation = -3824.838188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.28780 -40.92288 -39.13255 -37.47135 -36.26300 -35.65129 -34.91988 -32.50742 -30.89741 -30.68475 -29.98093 -28.71412 -26.73627 -25.99475 -23.88656 -23.18379 -22.56258 -21.46854 -21.04186 -20.70027 -19.57520 -18.53513 -17.69291 -17.34142 -17.04695 -16.75935 -16.42028 -16.17492 -15.80072 -15.49769 -15.21839 -15.07148 -14.83330 -14.62100 -14.34739 -14.27326 -14.00567 -13.83631 -13.62527 -13.45841 -13.15116 -13.03428 -12.98991 -12.85398 -12.55820 -12.38481 -12.22641 -12.01345 -11.81113 -11.69469 -11.51075 -11.19217 -11.11706 -10.93292 -10.73524 -10.39328 -9.73892 -8.99122 -8.64251 -8.32650 -6.37971 0.12897 1.09897 1.26296 1.34831 1.38734 1.42641 1.77442 2.12212 2.43450 2.86645 3.03092 3.22596 3.37747 3.44750 3.59592 3.86075 3.90482 4.23040 4.24771 4.34363 4.43449 4.43646 4.49550 4.54029 4.55993 4.63709 4.73250 4.79477 4.85940 4.92610 4.96718 5.01777 5.06474 5.10268 5.18925 5.22133 5.33064 5.37932 5.41790 5.46344 5.55463 5.73555 5.91069 5.97377 6.25173 6.28322 6.46948 6.57503 6.94237 6.95752 7.22670 7.45780 8.34414 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013106 B = 0.004181 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.903676 B = 6695.604010 C = 8510.789902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.094 4.094 3 C -0.086 4.086 4 H 0.109 0.891 5 C 0.114 3.886 6 N -0.608 5.608 7 C 0.591 3.409 8 O -0.583 6.583 9 C -0.056 4.056 10 C -0.192 4.192 11 C -0.151 4.151 12 C -0.083 4.083 13 C -0.156 4.156 14 C -0.138 4.138 15 C -0.091 4.091 16 C 0.057 3.943 17 N -0.265 5.265 18 C -0.366 4.366 19 H 0.090 0.910 20 C 0.014 3.986 21 N -0.853 5.853 22 Si 0.991 3.009 23 H -0.260 1.260 24 H -0.257 1.257 25 H -0.271 1.271 26 C 0.057 3.943 27 C 0.108 3.892 28 H 0.119 0.881 29 O -0.568 6.568 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.184 0.816 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.284 0.716 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -10.741 -13.809 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.132 4.132 3 C -0.105 4.105 4 H 0.127 0.873 5 C -0.008 4.008 6 N -0.342 5.342 7 C 0.383 3.617 8 O -0.465 6.465 9 C -0.172 4.172 10 C -0.219 4.219 11 C -0.155 4.155 12 C -0.102 4.102 13 C -0.174 4.174 14 C -0.158 4.158 15 C -0.112 4.112 16 C -0.058 4.058 17 N 0.073 4.927 18 C -0.494 4.494 19 H 0.108 0.892 20 C -0.194 4.194 21 N -0.483 5.483 22 Si 0.812 3.188 23 H -0.184 1.184 24 H -0.182 1.182 25 H -0.196 1.196 26 C -0.065 4.065 27 C 0.048 3.952 28 H 0.136 0.864 29 O -0.377 6.377 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.200 0.800 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.151 0.849 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.585 -10.655 -12.807 16.735 hybrid contribution -0.359 0.923 1.376 1.695 sum 1.226 -9.732 -11.432 15.063 Atomic orbital electron populations 1.21854 0.95700 1.02202 1.01680 1.21195 0.95354 0.93447 1.03192 1.22616 0.94515 0.98185 0.95209 0.87314 1.22416 0.91330 0.88139 0.98878 1.48006 1.23063 1.19663 1.43448 1.17069 0.84107 0.81029 0.79508 1.90733 1.37232 1.79561 1.38937 1.20107 1.00079 0.88952 1.08018 1.21438 0.94001 0.99917 1.06590 1.18488 0.98019 0.96001 1.03012 1.20505 0.93457 0.96416 0.99791 1.20776 1.01126 0.94807 1.00713 1.21000 0.94153 1.00795 0.99894 1.20229 0.97451 0.94010 0.99461 1.18743 0.90653 0.95660 1.00729 1.40126 1.15046 1.08564 1.29002 1.19860 0.88465 1.35101 1.05977 0.89249 1.26426 0.99721 0.97987 0.95287 1.70096 1.20715 1.33910 1.23629 0.85058 0.77624 0.78095 0.78066 1.18389 1.18156 1.19595 1.23552 0.90005 0.99346 0.93640 1.22880 0.93018 0.83090 0.96165 0.86386 1.86476 1.26569 1.45703 1.78962 0.94095 0.91903 0.91687 0.89721 0.92231 0.92395 0.92351 0.79956 0.83527 0.83378 0.84933 0.89032 0.90594 0.88589 0.89940 0.75156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.82 71.98 0.71 -1.80 16 2 C -0.09 -1.56 4.92 30.59 0.15 -1.41 16 3 C -0.09 -1.66 2.95 -9.32 -0.03 -1.69 16 4 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.11 3.40 5.84 86.93 0.51 3.91 16 6 N -0.61 -21.45 3.33 -815.82 -2.71 -24.17 16 7 C 0.59 28.70 7.80 86.51 0.68 29.37 16 8 O -0.58 -33.38 15.30 -4.23 -0.06 -33.45 16 9 C -0.06 -2.85 6.75 39.91 0.27 -2.58 16 10 C -0.19 -8.08 9.29 22.63 0.21 -7.87 16 11 C -0.15 -6.79 6.16 -21.34 -0.13 -6.92 16 12 C -0.08 -2.99 10.06 22.31 0.22 -2.76 16 13 C -0.16 -5.33 9.97 22.03 0.22 -5.11 16 14 C -0.14 -5.48 10.02 22.32 0.22 -5.26 16 15 C -0.09 -4.54 8.51 22.38 0.19 -4.35 16 16 C 0.06 3.02 6.10 39.06 0.24 3.25 16 17 N -0.27 -15.30 2.84 -331.34 -0.94 -16.24 16 18 C -0.37 -22.05 8.80 84.09 0.74 -21.31 16 19 H 0.09 5.63 6.94 -2.91 -0.02 5.61 16 20 C 0.01 0.79 4.41 84.95 0.37 1.17 16 21 N -0.85 -48.65 10.76 21.67 0.23 -48.42 16 22 Si 0.99 43.79 29.59 68.60 2.03 45.82 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.06 1.34 4.73 86.73 0.41 1.75 16 27 C 0.11 1.75 4.07 31.78 0.13 1.88 16 28 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 29 O -0.57 -9.35 12.26 -148.98 -1.83 -11.18 16 30 H 0.04 0.78 7.75 -2.39 -0.02 0.76 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 35 H 0.06 1.83 7.91 -2.38 -0.02 1.81 16 36 H 0.06 1.91 8.09 -2.39 -0.02 1.89 16 37 H 0.18 5.63 4.22 -2.91 -0.01 5.62 16 38 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 41 H 0.09 4.83 6.31 -2.91 -0.02 4.81 16 42 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.10 2.10 6.69 -2.39 -0.02 2.09 16 44 H 0.08 1.92 7.01 -2.39 -0.02 1.91 16 45 H 0.40 3.39 9.09 -74.06 -0.67 2.72 16 Total: -1.00 -80.72 360.40 2.18 -78.54 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.35 Total: 28.82 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 5.11 Total: -19.73 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -3.42 Total: -88.83 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.89 Total: -44.62 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -80.72 2.18 -78.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.154 kcal (2) G-P(sol) polarization free energy of solvation -80.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds