Wall clock time and date at job start Tue Mar 31 2020 16:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20766 * 120.00217 * 2 1 4 4 C 1.50698 * 120.00191 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47349 * 180.02562 * 4 2 1 6 6 C 1.34772 * 119.99745 * 89.99821 * 5 4 2 7 7 O 1.21666 * 120.00371 * 9.47819 * 6 5 4 8 8 C 1.46893 * 119.99602 * 189.47314 * 6 5 4 9 9 C 1.36118 * 125.43992 * 27.16303 * 8 6 5 10 10 C 1.41701 * 107.74708 * 180.23876 * 9 8 6 11 11 C 1.40024 * 133.34562 * 179.81975 * 10 9 8 12 12 C 1.36577 * 119.82758 * 179.97438 * 11 10 9 13 13 C 1.38860 * 120.60148 * 359.97438 * 12 11 10 14 14 C 1.37837 * 120.63122 * 359.97438 * 13 12 11 15 15 C 1.39095 * 119.81628 * 0.02562 * 14 13 12 16 16 N 1.37831 * 133.16252 * 180.02562 * 15 14 13 17 17 C 1.36898 * 125.62363 * 359.94522 * 16 15 14 18 18 H 1.07995 * 120.00260 * 146.46237 * 17 16 15 19 19 C 1.39007 * 119.99564 * 326.46377 * 17 16 15 20 20 N 1.31357 * 120.00240 * 334.10558 * 19 17 16 21 21 Si 1.86797 * 119.99994 * 153.83113 * 19 17 16 22 22 H 1.48507 * 109.47407 * 180.27410 * 21 19 17 23 23 H 1.48503 * 109.47188 * 300.27549 * 21 19 17 24 24 H 1.48499 * 109.47127 * 60.27745 * 21 19 17 25 25 C 1.46498 * 119.99864 * 270.00075 * 5 4 2 26 26 C 1.53001 * 109.47388 * 310.96055 * 25 5 4 27 27 C 1.53001 * 109.47236 * 70.96095 * 25 5 4 28 28 H 1.09004 * 109.47432 * 239.99520 * 1 2 3 29 29 H 1.08998 * 109.47263 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47070 * 119.99617 * 1 2 3 31 31 H 1.09005 * 109.47001 * 60.00428 * 4 2 1 32 32 H 1.08998 * 109.47317 * 300.00561 * 4 2 1 33 33 H 1.07998 * 126.12418 * 0.02562 * 9 8 6 34 34 H 1.08001 * 120.08648 * 359.94478 * 11 10 9 35 35 H 1.08002 * 119.70260 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.68412 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.09284 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99367 * 355.99693 * 20 19 17 39 39 H 1.08999 * 109.46982 * 190.95548 * 25 5 4 40 40 H 1.08999 * 109.47473 * 59.99794 * 26 25 5 41 41 H 1.08997 * 109.47036 * 180.02562 * 26 25 5 42 42 H 1.09004 * 109.46521 * 300.00110 * 26 25 5 43 43 H 1.09000 * 109.47109 * 59.99319 * 27 25 5 44 44 H 1.08999 * 109.47062 * 180.02562 * 27 25 5 45 45 H 1.09001 * 109.47130 * 299.99893 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7008 -1.0374 0.0002 6 6 4.3628 -0.9150 1.1677 7 8 3.8083 -1.1951 2.2138 8 6 5.7540 -0.4435 1.1772 9 6 6.3191 0.3670 0.2409 10 6 7.6700 0.5795 0.6122 11 6 8.7203 1.3088 0.0415 12 6 9.9441 1.3248 0.6476 13 6 10.1580 0.6241 1.8272 14 6 9.1393 -0.1001 2.4084 15 6 7.8842 -0.1316 1.8097 16 7 6.6969 -0.7483 2.1407 17 6 6.4878 -1.5384 3.2390 18 1 5.5244 -1.5408 3.7270 19 6 7.5157 -2.3375 3.7260 20 7 8.4700 -2.7438 2.9199 21 14 7.5440 -2.8275 5.5283 22 1 8.7382 -3.6693 5.7939 23 1 7.6011 -1.6069 6.3723 24 1 6.3151 -3.5958 5.8518 25 6 4.4214 -0.9027 -1.2682 26 6 4.0664 -2.0760 -2.1837 27 6 4.0226 0.4106 -1.9444 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.9972 -1.8762 -0.8909 32 1 1.9971 -1.8771 0.8891 33 1 5.8270 0.7724 -0.6308 34 1 8.5632 1.8567 -0.8758 35 1 10.7527 1.8884 0.2059 36 1 11.1318 0.6467 2.2937 37 1 9.3154 -0.6422 3.3258 38 1 8.4271 -2.5350 1.9736 39 1 5.4947 -0.9020 -1.0780 40 1 2.9932 -2.0767 -2.3739 41 1 4.6030 -1.9760 -3.1271 42 1 4.3506 -3.0116 -1.7018 43 1 4.2754 1.2465 -1.2922 44 1 4.5584 0.5105 -2.8883 45 1 2.9493 0.4100 -2.1347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000633222503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:18 Heat of formation + Delta-G solvation = 0.231787 kcal Electronic energy + Delta-G solvation = -29198.303891 eV Core-core repulsion = 25375.053650 eV Total energy + Delta-G solvation = -3823.250242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.86339 -39.81700 -38.25503 -36.31057 -35.86137 -33.88057 -31.95602 -30.70427 -30.48487 -29.05718 -28.78723 -27.09693 -26.58395 -24.60263 -23.00934 -21.49479 -20.98000 -20.06381 -19.94195 -18.73507 -18.01455 -16.61459 -16.10157 -16.02075 -15.65670 -15.26610 -14.91069 -14.56918 -14.25212 -14.24218 -13.91132 -13.81216 -13.54895 -13.19838 -13.06783 -12.91388 -12.54055 -12.45929 -12.41555 -12.25982 -12.01638 -11.86065 -11.60419 -11.37094 -11.19673 -11.08943 -10.86884 -10.77402 -10.46120 -10.36079 -10.28782 -9.87955 -9.83703 -9.28406 -9.01033 -8.70532 -8.34214 -7.49211 -6.98902 -6.74714 -4.40484 1.77513 2.02161 2.67804 3.00214 3.09509 3.16174 3.20594 3.37728 3.90859 4.00554 4.25301 4.50923 4.71652 4.88883 4.95998 4.97987 5.03603 5.19059 5.25726 5.28060 5.40864 5.52531 5.60980 5.65903 5.74232 5.81490 5.84033 5.89455 5.90373 6.06335 6.08891 6.21228 6.26810 6.46203 6.50206 6.62399 6.75889 6.86215 6.96004 7.04521 7.37369 7.47842 7.55068 7.59581 7.66116 7.80010 7.87257 7.97954 8.23002 8.72828 8.87346 9.15567 10.09529 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.005104 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.531589 B = 5484.596735 C = 6958.587832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.329 3.671 3 O -0.437 6.437 4 C 0.065 3.935 5 N -0.596 5.596 6 C 0.601 3.399 7 O -0.538 6.538 8 C -0.030 4.030 9 C -0.216 4.216 10 C -0.120 4.120 11 C -0.089 4.089 12 C -0.155 4.155 13 C -0.147 4.147 14 C -0.071 4.071 15 C 0.041 3.959 16 N -0.231 5.231 17 C -0.415 4.415 18 H 0.119 0.881 19 C 0.022 3.978 20 N -0.816 5.816 21 Si 1.079 2.921 22 H -0.272 1.272 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.113 3.887 26 C -0.161 4.161 27 C -0.159 4.159 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.289 0.711 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 1.086 -9.108 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.202 3.798 3 O -0.309 6.309 4 C -0.059 4.059 5 N -0.329 5.329 6 C 0.392 3.608 7 O -0.415 6.415 8 C -0.148 4.148 9 C -0.243 4.243 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.174 4.174 13 C -0.168 4.168 14 C -0.091 4.091 15 C -0.073 4.073 16 N 0.109 4.891 17 C -0.544 4.544 18 H 0.136 0.864 19 C -0.194 4.194 20 N -0.442 5.442 21 Si 0.901 3.099 22 H -0.197 1.197 23 H -0.200 1.200 24 H -0.201 1.201 25 C 0.010 3.990 26 C -0.219 4.219 27 C -0.217 4.217 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.157 0.843 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.125 0.412 -7.129 10.817 hybrid contribution -1.098 0.716 -1.329 1.867 sum -9.223 1.128 -8.458 12.565 Atomic orbital electron populations 1.22288 0.94470 1.04824 1.04346 1.25250 0.91940 0.91315 0.71336 1.90439 1.71813 1.34693 1.33921 1.21817 0.81776 0.96767 1.05558 1.47303 1.06509 1.72987 1.06101 1.17216 0.84981 0.75946 0.82612 1.90716 1.69511 1.49864 1.31454 1.19501 0.91821 1.10210 0.93218 1.20736 0.93623 1.08315 1.01591 1.17927 0.94210 1.03034 0.97333 1.20056 0.92303 0.99362 0.99045 1.20310 0.96681 1.02981 0.97417 1.20549 0.97791 1.01101 0.97336 1.20344 0.90129 0.98560 1.00044 1.18276 0.89201 1.01052 0.98777 1.40143 1.05834 1.28879 1.14212 1.21113 1.04437 1.24203 1.04639 0.86374 1.26928 0.91874 0.92917 1.07651 1.70657 1.32777 1.33556 1.07242 0.83377 0.77375 0.77425 0.71679 1.19656 1.20009 1.20087 1.21702 0.99788 0.94611 0.82863 1.22168 1.01320 0.98669 0.99763 1.22257 1.00998 0.98040 1.00400 0.88981 0.90148 0.89213 0.87293 0.86620 0.84279 0.87744 0.87795 0.87405 0.86086 0.89888 0.86086 0.92760 0.91238 0.92014 0.90971 0.92070 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 10.26 36.00 0.37 -1.34 16 2 C 0.33 4.33 6.49 -29.04 -0.19 4.14 16 3 O -0.44 -7.57 14.84 5.99 0.09 -7.48 16 4 C 0.06 0.86 5.58 -5.19 -0.03 0.83 16 5 N -0.60 -10.30 1.98 -168.92 -0.33 -10.63 16 6 C 0.60 13.69 7.43 -12.76 -0.09 13.60 16 7 O -0.54 -13.69 14.78 5.22 0.08 -13.61 16 8 C -0.03 -0.74 6.20 -82.25 -0.51 -1.25 16 9 C -0.22 -4.80 8.35 -39.02 -0.33 -5.13 16 10 C -0.12 -2.81 6.16 -106.90 -0.66 -3.47 16 11 C -0.09 -1.80 10.06 -39.51 -0.40 -2.19 16 12 C -0.15 -2.99 9.97 -39.95 -0.40 -3.39 16 13 C -0.15 -3.07 10.02 -39.50 -0.40 -3.46 16 14 C -0.07 -1.72 8.39 -39.41 -0.33 -2.05 16 15 C 0.04 1.05 5.53 -83.84 -0.46 0.59 16 16 N -0.23 -6.22 2.68 -56.08 -0.15 -6.37 16 17 C -0.42 -11.48 9.16 -15.00 -0.14 -11.62 16 18 H 0.12 3.40 6.66 -52.49 -0.35 3.05 16 19 C 0.02 0.57 4.14 -17.47 -0.07 0.50 16 20 N -0.82 -22.01 11.64 55.50 0.65 -21.37 16 21 Si 1.08 22.74 29.99 -169.99 -5.10 17.64 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 C 0.11 1.68 2.46 -67.93 -0.17 1.51 16 26 C -0.16 -1.84 8.91 37.16 0.33 -1.51 16 27 C -0.16 -2.14 7.14 37.16 0.27 -1.87 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.03 5.93 -51.93 -0.31 0.72 16 32 H 0.12 1.59 7.31 -51.93 -0.38 1.21 16 33 H 0.14 2.67 4.07 -52.49 -0.21 2.45 16 34 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.12 3.05 6.22 -52.49 -0.33 2.73 16 38 H 0.29 8.17 6.98 -40.82 -0.29 7.89 16 39 H 0.12 2.10 4.63 -51.93 -0.24 1.86 16 40 H 0.05 0.51 6.43 -51.93 -0.33 0.17 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.16 6.36 -51.93 -0.33 0.83 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.63 6.65 -51.93 -0.35 0.28 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -33.03 357.74 -8.30 -41.32 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.71 Total: 11.22 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -3.20 Total: -16.11 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.16 Total: -38.37 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.17 Total: -21.09 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.10 Total: 17.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.03 -8.30 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000633222503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.556 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds