Wall clock time and date at job start Tue Mar 31 2020 16:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20766 * 120.00217 * 2 1 4 4 C 1.50698 * 120.00191 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47349 * 180.02562 * 4 2 1 6 6 C 1.34772 * 119.99745 * 89.99821 * 5 4 2 7 7 O 1.21666 * 120.00371 * 9.47819 * 6 5 4 8 8 C 1.46893 * 119.99602 * 189.47314 * 6 5 4 9 9 C 1.36118 * 125.43992 * 27.16303 * 8 6 5 10 10 C 1.41701 * 107.74708 * 180.23876 * 9 8 6 11 11 C 1.40024 * 133.34562 * 179.81975 * 10 9 8 12 12 C 1.36577 * 119.82758 * 179.97438 * 11 10 9 13 13 C 1.38860 * 120.60148 * 359.97438 * 12 11 10 14 14 C 1.37837 * 120.63122 * 359.97438 * 13 12 11 15 15 C 1.39095 * 119.81628 * 0.02562 * 14 13 12 16 16 N 1.37831 * 133.16252 * 180.02562 * 15 14 13 17 17 C 1.36898 * 125.62363 * 359.94522 * 16 15 14 18 18 H 1.07995 * 120.00260 * 146.46237 * 17 16 15 19 19 C 1.39007 * 119.99564 * 326.46377 * 17 16 15 20 20 N 1.31357 * 120.00240 * 334.10558 * 19 17 16 21 21 Si 1.86797 * 119.99994 * 153.83113 * 19 17 16 22 22 H 1.48507 * 109.47407 * 180.27410 * 21 19 17 23 23 H 1.48503 * 109.47188 * 300.27549 * 21 19 17 24 24 H 1.48499 * 109.47127 * 60.27745 * 21 19 17 25 25 C 1.46498 * 119.99864 * 270.00075 * 5 4 2 26 26 C 1.53001 * 109.47388 * 310.96055 * 25 5 4 27 27 C 1.53001 * 109.47236 * 70.96095 * 25 5 4 28 28 H 1.09004 * 109.47432 * 239.99520 * 1 2 3 29 29 H 1.08998 * 109.47263 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47070 * 119.99617 * 1 2 3 31 31 H 1.09005 * 109.47001 * 60.00428 * 4 2 1 32 32 H 1.08998 * 109.47317 * 300.00561 * 4 2 1 33 33 H 1.07998 * 126.12418 * 0.02562 * 9 8 6 34 34 H 1.08001 * 120.08648 * 359.94478 * 11 10 9 35 35 H 1.08002 * 119.70260 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.68412 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.09284 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99367 * 355.99693 * 20 19 17 39 39 H 1.08999 * 109.46982 * 190.95548 * 25 5 4 40 40 H 1.08999 * 109.47473 * 59.99794 * 26 25 5 41 41 H 1.08997 * 109.47036 * 180.02562 * 26 25 5 42 42 H 1.09004 * 109.46521 * 300.00110 * 26 25 5 43 43 H 1.09000 * 109.47109 * 59.99319 * 27 25 5 44 44 H 1.08999 * 109.47062 * 180.02562 * 27 25 5 45 45 H 1.09001 * 109.47130 * 299.99893 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7008 -1.0374 0.0002 6 6 4.3628 -0.9150 1.1677 7 8 3.8083 -1.1951 2.2138 8 6 5.7540 -0.4435 1.1772 9 6 6.3191 0.3670 0.2409 10 6 7.6700 0.5795 0.6122 11 6 8.7203 1.3088 0.0415 12 6 9.9441 1.3248 0.6476 13 6 10.1580 0.6241 1.8272 14 6 9.1393 -0.1001 2.4084 15 6 7.8842 -0.1316 1.8097 16 7 6.6969 -0.7483 2.1407 17 6 6.4878 -1.5384 3.2390 18 1 5.5244 -1.5408 3.7270 19 6 7.5157 -2.3375 3.7260 20 7 8.4700 -2.7438 2.9199 21 14 7.5440 -2.8275 5.5283 22 1 8.7382 -3.6693 5.7939 23 1 7.6011 -1.6069 6.3723 24 1 6.3151 -3.5958 5.8518 25 6 4.4214 -0.9027 -1.2682 26 6 4.0664 -2.0760 -2.1837 27 6 4.0226 0.4106 -1.9444 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.9972 -1.8762 -0.8909 32 1 1.9971 -1.8771 0.8891 33 1 5.8270 0.7724 -0.6308 34 1 8.5632 1.8567 -0.8758 35 1 10.7527 1.8884 0.2059 36 1 11.1318 0.6467 2.2937 37 1 9.3154 -0.6422 3.3258 38 1 8.4271 -2.5350 1.9736 39 1 5.4947 -0.9020 -1.0780 40 1 2.9932 -2.0767 -2.3739 41 1 4.6030 -1.9760 -3.1271 42 1 4.3506 -3.0116 -1.7018 43 1 4.2754 1.2465 -1.2922 44 1 4.5584 0.5105 -2.8883 45 1 2.9493 0.4100 -2.1347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000633222503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:16 Heat of formation + Delta-G solvation = -18.951052 kcal Electronic energy + Delta-G solvation = -29199.135722 eV Core-core repulsion = 25375.053650 eV Total energy + Delta-G solvation = -3824.082072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.57522 -41.20709 -39.67974 -37.81759 -37.54089 -35.74021 -33.14808 -32.38450 -31.71029 -30.80817 -30.25221 -28.15153 -27.89301 -26.51714 -24.62000 -22.97078 -22.59474 -21.76588 -21.28122 -20.27292 -19.58024 -18.15170 -17.63777 -17.48429 -17.16000 -16.76492 -16.21953 -16.09615 -15.89427 -15.66694 -15.42772 -15.20438 -14.92827 -14.79861 -14.69985 -14.39882 -14.05611 -13.75567 -13.52606 -13.34796 -13.17472 -13.08774 -12.92134 -12.85826 -12.53000 -12.44460 -12.31426 -12.26239 -12.15427 -11.99085 -11.85155 -11.56747 -11.11111 -10.95313 -10.86678 -10.49693 -9.69613 -9.43666 -8.85258 -8.54331 -6.44672 0.03138 0.96148 0.99589 1.26959 1.39368 1.48841 1.67356 1.73037 2.18741 2.29853 2.72516 2.89398 3.17955 3.20158 3.61834 3.81317 4.06592 4.10892 4.17280 4.24095 4.30630 4.32800 4.42215 4.45325 4.59340 4.60920 4.68784 4.69751 4.71169 4.76182 4.88055 4.90707 5.01974 5.07437 5.11315 5.17186 5.21695 5.30191 5.42113 5.43581 5.57272 5.71897 5.75059 5.83845 6.04618 6.09890 6.28605 6.43242 6.57307 6.89021 7.10883 7.25134 8.05192 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.005104 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.531589 B = 5484.596735 C = 6958.587832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.331 3.669 3 O -0.487 6.487 4 C 0.052 3.948 5 N -0.584 5.584 6 C 0.588 3.412 7 O -0.582 6.582 8 C -0.057 4.057 9 C -0.193 4.193 10 C -0.146 4.146 11 C -0.082 4.082 12 C -0.151 4.151 13 C -0.127 4.127 14 C -0.115 4.115 15 C 0.022 3.978 16 N -0.267 5.267 17 C -0.449 4.449 18 H 0.090 0.910 19 C -0.008 4.008 20 N -0.833 5.833 21 Si 1.123 2.877 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.265 1.265 25 C 0.105 3.895 26 C -0.153 4.153 27 C -0.148 4.148 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.157 0.843 32 H 0.108 0.892 33 H 0.169 0.831 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.269 0.731 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.090 0.910 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 1.995 -12.164 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.207 3.793 3 O -0.362 6.362 4 C -0.070 4.070 5 N -0.315 5.315 6 C 0.379 3.621 7 O -0.463 6.463 8 C -0.173 4.173 9 C -0.219 4.219 10 C -0.151 4.151 11 C -0.100 4.100 12 C -0.170 4.170 13 C -0.147 4.147 14 C -0.135 4.135 15 C -0.091 4.091 16 N 0.072 4.928 17 C -0.576 4.576 18 H 0.108 0.892 19 C -0.217 4.217 20 N -0.459 5.459 21 Si 0.939 3.061 22 H -0.185 1.185 23 H -0.192 1.192 24 H -0.190 1.190 25 C 0.003 3.997 26 C -0.211 4.211 27 C -0.206 4.206 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.174 0.826 32 H 0.126 0.874 33 H 0.186 0.814 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.543 1.310 -10.246 13.404 hybrid contribution -0.985 0.593 -0.624 1.308 sum -9.528 1.903 -10.870 14.580 Atomic orbital electron populations 1.22278 0.90230 1.05542 1.06788 1.25791 0.94139 0.90058 0.69307 1.90441 1.73159 1.36008 1.36599 1.22292 0.79300 0.97952 1.07447 1.47405 1.08229 1.70673 1.05223 1.17357 0.84779 0.76111 0.83808 1.90668 1.70219 1.52095 1.33329 1.20207 0.92711 1.10563 0.93844 1.21122 0.93329 1.06188 1.01295 1.18428 0.95566 1.03967 0.97095 1.20541 0.91500 0.98016 0.99968 1.20818 0.97652 1.02175 0.96331 1.21034 0.97897 0.98498 0.97287 1.20398 0.91127 1.01279 1.00698 1.18827 0.89391 1.01134 0.99785 1.40280 1.06923 1.30508 1.15135 1.20924 1.04018 1.26270 1.06404 0.89247 1.28206 0.91041 0.91957 1.10523 1.70763 1.33840 1.35128 1.06137 0.82883 0.78053 0.77645 0.67504 1.18455 1.19242 1.19006 1.21875 0.98062 0.97377 0.82390 1.22127 1.03553 0.95959 0.99456 1.22150 1.02202 0.95583 1.00672 0.87626 0.90366 0.85308 0.82582 0.87414 0.81395 0.83786 0.82979 0.84384 0.88345 0.92071 0.89105 0.89846 0.88901 0.93451 0.93963 0.89165 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 10.26 71.23 0.73 -1.96 16 2 C 0.33 8.27 6.49 29.10 0.19 8.46 16 3 O -0.49 -16.81 14.84 -1.47 -0.02 -16.83 16 4 C 0.05 1.33 5.58 85.63 0.48 1.81 16 5 N -0.58 -20.39 1.98 -806.59 -1.60 -21.99 16 6 C 0.59 28.45 7.43 86.51 0.64 29.10 16 7 O -0.58 -31.91 14.78 -4.24 -0.06 -31.97 16 8 C -0.06 -2.99 6.20 39.91 0.25 -2.74 16 9 C -0.19 -8.75 8.35 22.63 0.19 -8.56 16 10 C -0.15 -6.84 6.16 -21.34 -0.13 -6.98 16 11 C -0.08 -3.08 10.06 22.31 0.22 -2.86 16 12 C -0.15 -5.29 9.97 22.03 0.22 -5.07 16 13 C -0.13 -5.10 10.02 22.32 0.22 -4.88 16 14 C -0.11 -5.76 8.39 22.38 0.19 -5.58 16 15 C 0.02 1.21 5.53 39.06 0.22 1.42 16 16 N -0.27 -15.41 2.68 -331.35 -0.89 -16.30 16 17 C -0.45 -26.96 9.16 84.09 0.77 -26.19 16 18 H 0.09 5.70 6.66 -2.91 -0.02 5.68 16 19 C -0.01 -0.42 4.14 84.95 0.35 -0.07 16 20 N -0.83 -47.74 11.64 21.67 0.25 -47.49 16 21 Si 1.12 48.47 29.99 68.60 2.06 50.53 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 C 0.11 3.00 2.46 44.99 0.11 3.11 16 26 C -0.15 -3.06 8.91 71.98 0.64 -2.42 16 27 C -0.15 -3.65 7.14 71.98 0.51 -3.14 16 28 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 30 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.16 2.38 5.93 -2.38 -0.01 2.36 16 32 H 0.11 2.99 7.31 -2.39 -0.02 2.97 16 33 H 0.17 6.40 4.07 -2.91 -0.01 6.39 16 34 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 36 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.10 5.29 6.22 -2.91 -0.02 5.27 16 38 H 0.27 16.32 6.98 -92.71 -0.65 15.67 16 39 H 0.09 3.16 4.63 -2.39 -0.01 3.15 16 40 H 0.08 1.17 6.43 -2.39 -0.02 1.16 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.04 1.31 6.36 -2.39 -0.02 1.29 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 1.39 6.65 -2.39 -0.02 1.38 16 Total: -1.00 -82.23 357.74 6.69 -75.54 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 1.15 Total: 35.07 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 5.81 Total: -26.54 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.23 Total: -85.78 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.08 Total: -48.81 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.06 Total: 50.53 kcal Total: -82.23 6.69 -75.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000633222503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.589 kcal (2) G-P(sol) polarization free energy of solvation -82.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds