Wall clock time and date at job start Tue Mar 31 2020 16:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46739 * 160.85402 * 3 2 1 5 5 C 1.47847 * 111.00022 * 56.68650 * 4 3 2 6 6 C 1.54908 * 104.79494 * 146.36189 * 5 4 3 7 7 C 1.55141 * 101.65252 * 322.93022 * 6 5 4 8 8 C 1.47442 * 110.99953 * 177.52670 * 4 3 2 9 9 H 1.08998 * 109.88884 * 117.17139 * 8 4 3 10 10 C 1.50704 * 109.88580 * 356.15170 * 8 4 3 11 11 O 1.21281 * 120.00092 * 292.74431 * 10 8 4 12 12 N 1.34777 * 119.99767 * 112.47544 * 10 8 4 13 13 C 1.46504 * 119.99597 * 180.26958 * 12 10 8 14 14 C 1.50700 * 109.46897 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93312 * 269.72830 * 14 13 12 16 16 C 1.38102 * 120.06979 * 179.72700 * 15 14 13 17 17 C 1.38879 * 119.92735 * 0.56614 * 16 15 14 18 18 O 1.35755 * 120.06611 * 179.68593 * 17 16 15 19 19 C 1.34828 * 116.99920 * 186.11638 * 18 17 16 20 20 H 1.07999 * 120.00009 * 5.89155 * 19 18 17 21 21 C 1.38653 * 120.00042 * 185.89659 * 19 18 17 22 22 N 1.31553 * 120.00088 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00056 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47306 * 89.99719 * 23 21 19 25 25 H 1.48501 * 109.47284 * 210.00022 * 23 21 19 26 26 H 1.48506 * 109.47130 * 330.00065 * 23 21 19 27 27 C 1.38871 * 119.86508 * 359.71187 * 17 16 15 28 28 C 1.38107 * 119.93181 * 359.97438 * 27 17 16 29 29 H 4.40889 * 5.52112 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47145 * 40.85323 * 3 2 1 31 31 H 1.09004 * 109.46892 * 280.85154 * 3 2 1 32 32 H 1.09000 * 110.37352 * 265.19341 * 5 4 3 33 33 H 1.09002 * 110.37010 * 27.53409 * 5 4 3 34 34 H 1.08996 * 110.99010 * 81.02299 * 6 5 4 35 35 H 1.08999 * 110.99209 * 204.80039 * 6 5 4 36 36 H 1.09001 * 110.70546 * 277.26652 * 7 6 5 37 37 H 1.08998 * 110.70172 * 154.03505 * 7 6 5 38 38 H 0.96997 * 120.00356 * 0.27380 * 12 10 8 39 39 H 1.08994 * 109.47330 * 299.99865 * 13 12 10 40 40 H 1.09004 * 109.46869 * 60.00184 * 13 12 10 41 41 H 1.08002 * 119.96822 * 359.97438 * 15 14 13 42 42 H 1.08001 * 120.03754 * 180.27539 * 16 15 14 43 43 H 0.97006 * 120.00102 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.03653 * 179.97438 * 27 17 16 45 45 H 1.07992 * 119.96597 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.3093 -0.4543 5 6 2.5964 2.3980 0.3887 6 6 3.7250 3.4581 0.4346 7 6 4.9924 2.5646 0.4827 8 6 4.6077 1.3671 -0.4112 9 1 5.0028 1.5100 -1.4170 10 6 5.1538 0.0917 0.1773 11 8 4.9542 -0.1719 1.3441 12 7 5.8593 -0.7586 -0.5946 13 6 6.3851 -2.0013 -0.0240 14 6 7.1293 -2.7669 -1.0875 15 6 6.4587 -3.6881 -1.8714 16 6 7.1367 -4.3872 -2.8506 17 6 8.4957 -4.1729 -3.0398 18 8 9.1663 -4.8633 -3.9972 19 6 10.5040 -4.7021 -4.0444 20 1 11.0054 -4.1235 -3.2827 21 6 11.2361 -5.2792 -5.0709 22 7 12.5413 -5.1215 -5.1172 23 14 10.3690 -6.2805 -6.3880 24 1 9.9720 -5.3884 -7.5069 25 1 11.2869 -7.3320 -6.8950 26 1 9.1586 -6.9171 -5.8092 27 6 9.1675 -3.2515 -2.2472 28 6 8.4825 -2.5508 -1.2739 29 1 -1.0502 -0.0004 0.0003 30 1 3.0098 -0.7765 -0.6722 31 1 3.0095 -0.1927 1.0093 32 1 1.6984 2.8190 -0.0633 33 1 2.3806 2.0298 1.3917 34 1 3.7169 4.0761 -0.4632 35 1 3.6463 4.0737 1.3306 36 1 5.1935 2.2356 1.5023 37 1 5.8521 3.0928 0.0705 38 1 6.0190 -0.5478 -1.5278 39 1 7.0631 -1.7661 0.7964 40 1 5.5596 -2.6075 0.3492 41 1 5.4029 -3.8580 -1.7203 42 1 6.6115 -5.1032 -3.4654 43 1 13.0535 -5.5255 -5.8351 44 1 10.2244 -3.0830 -2.3917 45 1 9.0042 -1.8338 -0.6575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730282363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:29 Heat of formation + Delta-G solvation = 29.849455 kcal Electronic energy + Delta-G solvation = -26676.764188 eV Core-core repulsion = 22854.798265 eV Total energy + Delta-G solvation = -3821.965924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96938 -39.38001 -38.14101 -36.98713 -34.59802 -34.30534 -32.51414 -31.49779 -30.73651 -30.38700 -29.30922 -26.46533 -26.10792 -24.68882 -22.42041 -22.19263 -21.71213 -20.69123 -20.09641 -18.65820 -18.03088 -17.51033 -17.22879 -16.78603 -15.93430 -15.51318 -15.40422 -14.97979 -14.79839 -14.46044 -14.23207 -13.96035 -13.85939 -13.70861 -13.40627 -13.33232 -12.83379 -12.70281 -12.56472 -12.31372 -12.28272 -12.05728 -11.82832 -11.54352 -11.49876 -11.11882 -11.02814 -10.86210 -10.81293 -10.69368 -10.43385 -10.25310 -10.22328 -9.54325 -9.18423 -8.98088 -8.60978 -8.41828 -7.51795 -6.52767 -4.19683 1.90021 1.98888 2.23145 2.53282 2.65911 3.12866 3.17907 3.20644 3.33130 3.77553 4.05442 4.14432 4.22767 4.34166 4.36934 4.60933 4.72915 4.78030 4.97981 4.99654 5.08800 5.09726 5.21579 5.27645 5.29409 5.43664 5.51032 5.52833 5.55720 5.65734 5.67409 5.71442 5.78634 5.86529 5.99804 6.20644 6.32885 6.42131 6.45553 6.50431 6.63864 6.86179 7.08456 7.14831 7.39527 7.40099 7.46435 7.67178 7.91099 8.02844 8.81757 9.42246 10.54329 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.002194 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.511946 B =12757.868623 C =13286.473856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.131 3.869 4 N -0.500 5.500 5 C 0.041 3.959 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.053 3.947 9 H 0.107 0.893 10 C 0.498 3.502 11 O -0.545 6.545 12 N -0.714 5.714 13 C 0.176 3.824 14 C -0.208 4.208 15 C -0.056 4.056 16 C -0.195 4.195 17 C 0.167 3.833 18 O -0.212 6.212 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.065 3.935 22 N -0.874 5.874 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.223 4.223 28 C -0.052 4.052 29 H 0.218 0.782 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.405 0.595 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.281 0.719 44 H 0.135 0.865 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.926 14.033 9.211 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C 0.005 3.995 4 N -0.225 5.225 5 C -0.086 4.086 6 C -0.165 4.165 7 C -0.168 4.168 8 C -0.058 4.058 9 H 0.124 0.876 10 C 0.283 3.717 11 O -0.423 6.423 12 N -0.365 5.365 13 C 0.053 3.947 14 C -0.209 4.209 15 C -0.074 4.074 16 C -0.214 4.214 17 C 0.113 3.887 18 O -0.116 6.116 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.511 5.511 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.206 1.206 26 H -0.183 1.183 27 C -0.243 4.243 28 C -0.071 4.071 29 H 0.235 0.765 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.240 0.760 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.091 0.909 44 H 0.152 0.848 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.040 13.651 9.232 24.434 hybrid contribution 0.159 -0.540 -0.328 0.651 sum -17.881 13.111 8.904 23.893 Atomic orbital electron populations 1.24862 0.95805 0.99590 1.01729 1.22796 0.94026 1.00918 0.99865 1.19767 0.85353 0.92024 1.02367 1.64144 1.04009 1.03012 1.51359 1.23116 0.98310 0.91212 0.96005 1.22704 0.93653 0.97302 1.02806 1.22777 0.98877 0.94512 1.00617 1.22675 0.88819 0.93122 1.01149 0.87558 1.21011 0.78387 0.85676 0.86658 1.90669 1.58362 1.76493 1.16796 1.46481 1.53919 1.21500 1.14569 1.20036 0.96926 0.83498 0.94194 1.19248 0.94457 1.04193 1.03040 1.20528 0.98358 0.94680 0.93877 1.20211 0.92350 1.05734 1.03086 1.19205 0.91226 0.89676 0.88561 1.83596 1.22233 1.58867 1.46903 1.20778 0.77399 1.35582 1.12914 0.87538 1.24499 0.94926 0.97020 0.97520 1.69642 1.05142 1.42976 1.33357 0.86172 0.79911 0.79859 0.80929 1.19802 1.20646 1.18288 1.21286 1.01676 1.01137 1.00170 1.20694 0.93129 0.97194 0.96061 0.76543 0.88526 0.89030 0.89762 0.92921 0.90267 0.90310 0.89850 0.89862 0.76011 0.91314 0.91410 0.86807 0.86338 0.90872 0.84772 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.89 19.25 29.55 0.57 -1.32 16 2 C -0.18 -1.96 12.53 -37.12 -0.47 -2.43 16 3 C 0.13 1.47 4.24 -6.61 -0.03 1.45 16 4 N -0.50 -5.05 5.24 -228.20 -1.20 -6.25 16 5 C 0.04 0.36 5.77 -2.30 -0.01 0.35 16 6 C -0.13 -0.89 7.08 -24.59 -0.17 -1.06 16 7 C -0.13 -1.05 6.42 -24.91 -0.16 -1.21 16 8 C 0.05 0.50 3.84 -67.88 -0.26 0.24 16 9 H 0.11 0.84 7.96 -51.93 -0.41 0.43 16 10 C 0.50 5.70 4.89 -10.98 -0.05 5.65 16 11 O -0.55 -7.88 14.11 5.56 0.08 -7.81 16 12 N -0.71 -7.84 5.55 -61.47 -0.34 -8.18 16 13 C 0.18 2.21 5.80 -5.19 -0.03 2.18 16 14 C -0.21 -3.05 5.25 -104.58 -0.55 -3.59 16 15 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 16 C -0.19 -3.55 9.99 -39.39 -0.39 -3.94 16 17 C 0.17 3.59 6.65 -39.11 -0.26 3.33 16 18 O -0.21 -5.33 8.59 0.04 0.00 -5.33 16 19 C -0.39 -10.59 9.89 30.89 0.31 -10.28 16 20 H 0.11 2.94 5.55 -52.49 -0.29 2.65 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 22 N -0.87 -24.47 13.96 55.48 0.77 -23.69 16 23 Si 0.91 20.93 28.62 -169.99 -4.86 16.07 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 27 C -0.22 -4.46 9.13 -39.40 -0.36 -4.82 16 28 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 29 H 0.22 1.23 7.80 -54.08 -0.42 0.80 16 30 H 0.10 1.10 7.65 -51.93 -0.40 0.70 16 31 H 0.09 1.18 5.65 -51.93 -0.29 0.89 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.51 7.74 -51.93 -0.40 0.11 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.81 7.32 -51.93 -0.38 0.43 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.40 3.96 8.33 -40.82 -0.34 3.62 16 39 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 2.85 5.73 -52.49 -0.30 2.55 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -29.95 377.95 -8.76 -38.71 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.17 Total: 7.06 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.74 Total: -16.28 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.76 Total: -38.12 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.86 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.95 -8.76 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730282363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.558 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds