Wall clock time and date at job start Tue Mar 31 2020 16:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46739 * 160.85402 * 3 2 1 5 5 C 1.47847 * 111.00022 * 56.68650 * 4 3 2 6 6 C 1.54908 * 104.79494 * 146.36189 * 5 4 3 7 7 C 1.55141 * 101.65252 * 322.93022 * 6 5 4 8 8 C 1.47442 * 110.99953 * 177.52670 * 4 3 2 9 9 H 1.08998 * 109.88884 * 117.17139 * 8 4 3 10 10 C 1.50704 * 109.88580 * 356.15170 * 8 4 3 11 11 O 1.21281 * 120.00092 * 292.74431 * 10 8 4 12 12 N 1.34777 * 119.99767 * 112.47544 * 10 8 4 13 13 C 1.46504 * 119.99597 * 180.26958 * 12 10 8 14 14 C 1.50700 * 109.46897 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93312 * 269.72830 * 14 13 12 16 16 C 1.38102 * 120.06979 * 179.72700 * 15 14 13 17 17 C 1.38879 * 119.92735 * 0.56614 * 16 15 14 18 18 O 1.35755 * 120.06611 * 179.68593 * 17 16 15 19 19 C 1.34828 * 116.99920 * 186.11638 * 18 17 16 20 20 H 1.07999 * 120.00009 * 5.89155 * 19 18 17 21 21 C 1.38653 * 120.00042 * 185.89659 * 19 18 17 22 22 N 1.31553 * 120.00088 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00056 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47306 * 89.99719 * 23 21 19 25 25 H 1.48501 * 109.47284 * 210.00022 * 23 21 19 26 26 H 1.48506 * 109.47130 * 330.00065 * 23 21 19 27 27 C 1.38871 * 119.86508 * 359.71187 * 17 16 15 28 28 C 1.38107 * 119.93181 * 359.97438 * 27 17 16 29 29 H 4.40889 * 5.52112 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47145 * 40.85323 * 3 2 1 31 31 H 1.09004 * 109.46892 * 280.85154 * 3 2 1 32 32 H 1.09000 * 110.37352 * 265.19341 * 5 4 3 33 33 H 1.09002 * 110.37010 * 27.53409 * 5 4 3 34 34 H 1.08996 * 110.99010 * 81.02299 * 6 5 4 35 35 H 1.08999 * 110.99209 * 204.80039 * 6 5 4 36 36 H 1.09001 * 110.70546 * 277.26652 * 7 6 5 37 37 H 1.08998 * 110.70172 * 154.03505 * 7 6 5 38 38 H 0.96997 * 120.00356 * 0.27380 * 12 10 8 39 39 H 1.08994 * 109.47330 * 299.99865 * 13 12 10 40 40 H 1.09004 * 109.46869 * 60.00184 * 13 12 10 41 41 H 1.08002 * 119.96822 * 359.97438 * 15 14 13 42 42 H 1.08001 * 120.03754 * 180.27539 * 16 15 14 43 43 H 0.97006 * 120.00102 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.03653 * 179.97438 * 27 17 16 45 45 H 1.07992 * 119.96597 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.3093 -0.4543 5 6 2.5964 2.3980 0.3887 6 6 3.7250 3.4581 0.4346 7 6 4.9924 2.5646 0.4827 8 6 4.6077 1.3671 -0.4112 9 1 5.0028 1.5100 -1.4170 10 6 5.1538 0.0917 0.1773 11 8 4.9542 -0.1719 1.3441 12 7 5.8593 -0.7586 -0.5946 13 6 6.3851 -2.0013 -0.0240 14 6 7.1293 -2.7669 -1.0875 15 6 6.4587 -3.6881 -1.8714 16 6 7.1367 -4.3872 -2.8506 17 6 8.4957 -4.1729 -3.0398 18 8 9.1663 -4.8633 -3.9972 19 6 10.5040 -4.7021 -4.0444 20 1 11.0054 -4.1235 -3.2827 21 6 11.2361 -5.2792 -5.0709 22 7 12.5413 -5.1215 -5.1172 23 14 10.3690 -6.2805 -6.3880 24 1 9.9720 -5.3884 -7.5069 25 1 11.2869 -7.3320 -6.8950 26 1 9.1586 -6.9171 -5.8092 27 6 9.1675 -3.2515 -2.2472 28 6 8.4825 -2.5508 -1.2739 29 1 -1.0502 -0.0004 0.0003 30 1 3.0098 -0.7765 -0.6722 31 1 3.0095 -0.1927 1.0093 32 1 1.6984 2.8190 -0.0633 33 1 2.3806 2.0298 1.3917 34 1 3.7169 4.0761 -0.4632 35 1 3.6463 4.0737 1.3306 36 1 5.1935 2.2356 1.5023 37 1 5.8521 3.0928 0.0705 38 1 6.0190 -0.5478 -1.5278 39 1 7.0631 -1.7661 0.7964 40 1 5.5596 -2.6075 0.3492 41 1 5.4029 -3.8580 -1.7203 42 1 6.6115 -5.1032 -3.4654 43 1 13.0535 -5.5255 -5.8351 44 1 10.2244 -3.0830 -2.3917 45 1 9.0042 -1.8338 -0.6575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730282363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:27 Heat of formation + Delta-G solvation = 10.031709 kcal Electronic energy + Delta-G solvation = -26677.623550 eV Core-core repulsion = 22854.798265 eV Total energy + Delta-G solvation = -3822.825285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.83561 -40.93408 -39.16271 -38.38316 -35.72877 -35.03721 -34.45426 -32.24524 -31.94633 -31.78146 -30.26443 -27.77143 -27.16599 -26.15930 -23.73440 -23.30760 -22.34840 -22.05741 -21.01114 -19.85937 -19.42882 -19.12727 -18.15267 -17.65342 -16.83978 -16.71874 -16.50703 -16.19100 -15.80939 -15.77266 -15.67802 -15.52302 -15.05062 -14.77665 -14.57710 -14.33201 -14.21334 -14.08675 -13.96399 -13.34435 -13.27838 -13.10145 -12.97559 -12.61768 -12.53018 -12.45750 -12.34437 -12.12404 -11.94243 -11.72863 -11.46383 -11.33934 -11.21079 -11.19328 -10.90890 -10.16184 -9.84787 -9.44120 -9.09264 -8.51603 -6.24509 0.47302 0.53379 1.32286 1.35313 1.36623 1.52000 1.74528 1.87899 2.18619 2.27071 2.77097 3.02947 3.07424 3.10259 3.36996 3.51197 3.72003 3.77533 3.90384 3.99558 4.12891 4.13349 4.32300 4.37607 4.41013 4.45311 4.51098 4.53361 4.69448 4.78099 4.80076 4.89292 4.94164 4.97870 5.03713 5.06236 5.20736 5.25477 5.32954 5.37403 5.52493 5.69106 5.72679 5.74128 5.77070 5.87078 6.17851 6.48875 6.64968 6.82618 7.12646 7.55610 8.59668 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.002194 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.511946 B =12757.868623 C =13286.473856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.222 4.222 3 C 0.138 3.862 4 N -0.503 5.503 5 C 0.039 3.961 6 C -0.118 4.118 7 C -0.128 4.128 8 C 0.053 3.947 9 H 0.126 0.874 10 C 0.501 3.499 11 O -0.575 6.575 12 N -0.708 5.708 13 C 0.181 3.819 14 C -0.174 4.174 15 C -0.045 4.045 16 C -0.192 4.192 17 C 0.129 3.871 18 O -0.242 6.242 19 C -0.399 4.399 20 H 0.082 0.918 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.262 1.262 27 C -0.237 4.237 28 C -0.049 4.049 29 H 0.251 0.749 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.413 0.587 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.152 0.848 42 H 0.130 0.870 43 H 0.285 0.715 44 H 0.109 0.891 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.214 15.411 9.589 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.223 4.223 3 C 0.011 3.989 4 N -0.228 5.228 5 C -0.089 4.089 6 C -0.156 4.156 7 C -0.167 4.167 8 C -0.057 4.057 9 H 0.144 0.856 10 C 0.288 3.712 11 O -0.455 6.455 12 N -0.359 5.359 13 C 0.059 3.941 14 C -0.175 4.175 15 C -0.064 4.064 16 C -0.211 4.211 17 C 0.079 3.921 18 O -0.149 6.149 19 C -0.475 4.475 20 H 0.100 0.900 21 C -0.188 4.188 22 N -0.561 5.561 23 Si 0.792 3.208 24 H -0.191 1.191 25 H -0.194 1.194 26 H -0.186 1.186 27 C -0.256 4.256 28 C -0.068 4.068 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.360 15.060 9.630 27.853 hybrid contribution 0.879 -0.773 -0.132 1.178 sum -20.481 14.287 9.497 26.717 Atomic orbital electron populations 1.25714 0.96623 0.97698 0.99638 1.23085 0.94660 1.02758 1.01783 1.19573 0.85875 0.92487 1.00938 1.64222 1.04316 1.02811 1.51418 1.23159 0.99245 0.91370 0.95096 1.22709 0.92001 0.96785 1.04107 1.22792 1.00184 0.94341 0.99380 1.22823 0.88481 0.92218 1.02208 0.85640 1.21354 0.77677 0.86083 0.86118 1.90667 1.59368 1.77194 1.18280 1.46305 1.53758 1.20883 1.14973 1.19928 0.96987 0.84027 0.93206 1.19520 0.93679 1.02521 1.01772 1.20933 0.99996 0.93271 0.92185 1.20506 0.90947 1.05947 1.03687 1.19754 0.92689 0.90803 0.88835 1.83538 1.20917 1.61303 1.49134 1.20685 0.78763 1.35419 1.12620 0.90043 1.25290 0.95576 0.98304 0.99666 1.69727 1.06411 1.45203 1.34773 0.85224 0.78690 0.78604 0.78268 1.19061 1.19359 1.18577 1.21274 1.00877 1.02017 1.01472 1.20919 0.93917 0.96855 0.95082 0.73299 0.89029 0.91164 0.89281 0.94353 0.88879 0.89092 0.91739 0.87976 0.75004 0.91198 0.90640 0.83050 0.85205 0.90534 0.87265 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 19.25 74.32 1.43 -1.50 16 2 C -0.22 -4.66 12.53 31.13 0.39 -4.27 16 3 C 0.14 2.96 4.24 84.50 0.36 3.32 16 4 N -0.50 -9.27 5.24 -875.90 -4.59 -13.86 16 5 C 0.04 0.62 5.77 86.77 0.50 1.12 16 6 C -0.12 -1.36 7.08 31.98 0.23 -1.13 16 7 C -0.13 -1.80 6.42 31.77 0.20 -1.60 16 8 C 0.05 0.87 3.84 44.51 0.17 1.05 16 9 H 0.13 1.58 7.96 -2.39 -0.02 1.56 16 10 C 0.50 10.48 4.89 87.66 0.43 10.91 16 11 O -0.58 -15.95 14.11 -3.03 -0.04 -15.99 16 12 N -0.71 -13.50 5.55 -466.78 -2.59 -16.08 16 13 C 0.18 3.96 5.80 85.63 0.50 4.46 16 14 C -0.17 -4.56 5.25 -19.83 -0.10 -4.67 16 15 C -0.05 -1.23 9.69 22.25 0.22 -1.02 16 16 C -0.19 -6.70 9.99 22.39 0.22 -6.47 16 17 C 0.13 5.65 6.65 22.58 0.15 5.80 16 18 O -0.24 -12.61 8.59 -22.77 -0.20 -12.81 16 19 C -0.40 -22.77 9.89 67.92 0.67 -22.10 16 20 H 0.08 4.88 5.55 -2.91 -0.02 4.86 16 21 C 0.01 0.59 5.49 84.83 0.47 1.06 16 22 N -0.92 -53.92 13.96 21.61 0.30 -53.62 16 23 Si 0.97 44.27 28.62 68.60 1.96 46.23 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 27 C -0.24 -9.67 9.13 22.39 0.20 -9.47 16 28 C -0.05 -1.53 9.69 22.25 0.22 -1.31 16 29 H 0.25 1.92 7.80 -4.41 -0.03 1.89 16 30 H 0.09 1.96 7.65 -2.39 -0.02 1.94 16 31 H 0.07 1.80 5.65 -2.39 -0.01 1.78 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 0.72 7.74 -2.39 -0.02 0.70 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.17 7.32 -2.39 -0.02 1.16 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.41 6.70 8.33 -92.71 -0.77 5.93 16 39 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 40 H 0.08 1.63 8.08 -2.38 -0.02 1.61 16 41 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 43 H 0.29 15.31 8.31 -92.70 -0.77 14.54 16 44 H 0.11 4.99 5.73 -2.91 -0.02 4.97 16 45 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -68.95 377.95 1.33 -67.62 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.24 Total: 24.34 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 6.25 Total: -25.83 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -6.88 Total: -83.56 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.24 Total: -28.80 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.96 Total: 46.23 kcal Total: -68.95 1.33 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730282363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.649 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds