Wall clock time and date at job start Tue Mar 31 2020 16:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33613 * 1 3 3 C 1.47608 * 126.11521 * 2 1 4 4 C 1.38932 * 133.93822 * 0.02562 * 3 2 1 5 5 C 1.38102 * 119.75355 * 179.97438 * 4 3 2 6 6 C 1.38604 * 120.49180 * 359.97438 * 5 4 3 7 7 C 1.37990 * 120.56031 * 359.97438 * 6 5 4 8 8 C 1.39290 * 119.76694 * 0.27661 * 7 6 5 9 9 C 1.47129 * 133.63391 * 179.74663 * 8 7 6 10 10 O 1.21641 * 125.44208 * 0.03288 * 9 8 7 11 11 N 1.34502 * 109.11364 * 179.97438 * 9 8 7 12 12 C 1.46504 * 124.94294 * 179.97438 * 11 9 8 13 13 C 1.50691 * 109.46983 * 89.97649 * 12 11 9 14 14 O 1.21282 * 120.00509 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99829 * 180.02562 * 13 12 11 16 16 C 1.46510 * 119.99995 * 179.97438 * 15 13 12 17 17 C 1.50691 * 109.47020 * 89.99632 * 16 15 13 18 18 H 1.08001 * 120.00707 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99809 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00030 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47148 * 60.00267 * 21 19 17 23 23 H 1.48499 * 109.46914 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47212 * 299.99954 * 21 19 17 25 25 C 1.46495 * 120.00038 * 359.97438 * 15 13 12 26 26 C 1.52996 * 109.47563 * 120.00379 * 25 15 13 27 27 C 1.53007 * 109.46780 * 240.00245 * 25 15 13 28 28 H 1.07993 * 120.00190 * 0.02975 * 1 2 3 29 29 H 1.08001 * 119.99970 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.12253 * 359.96709 * 4 3 2 31 31 H 1.08002 * 119.75598 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.71710 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.11108 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.46991 * 209.97678 * 12 11 9 35 35 H 1.08996 * 109.46646 * 329.97370 * 12 11 9 36 36 H 1.09001 * 109.46546 * 210.00051 * 16 15 13 37 37 H 1.09001 * 109.46533 * 329.99375 * 16 15 13 38 38 H 0.96998 * 120.00038 * 179.97438 * 20 19 17 39 39 H 1.08993 * 109.47246 * 0.02562 * 25 15 13 40 40 H 1.09002 * 109.46983 * 59.99344 * 26 25 15 41 41 H 1.09001 * 109.47664 * 180.02562 * 26 25 15 42 42 H 1.09003 * 109.46974 * 300.00060 * 26 25 15 43 43 H 1.08990 * 109.47231 * 60.00309 * 27 25 15 44 44 H 1.09001 * 109.46586 * 180.02562 * 27 25 15 45 45 H 1.08998 * 109.47302 * 299.99493 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1924 0.0000 4 6 1.9662 2.5609 0.0004 5 6 3.0287 3.4430 0.0008 6 6 4.3328 2.9733 0.0013 7 6 4.5902 1.6177 0.0019 8 6 3.5313 0.7127 -0.0037 9 6 3.4514 -0.7564 -0.0095 10 8 4.4026 -1.5146 -0.0099 11 7 2.1585 -1.1271 -0.0131 12 6 1.6829 -2.5128 -0.0198 13 6 1.5183 -2.9942 1.3987 14 8 1.7735 -2.2530 2.3241 15 7 1.0883 -4.2488 1.6389 16 6 0.9287 -4.7170 3.0180 17 6 -0.4699 -4.4167 3.4917 18 1 -1.1702 -3.9265 2.8316 19 6 -0.8560 -4.7686 4.7677 20 7 -0.0034 -5.3660 5.5715 21 14 -2.5900 -4.3970 5.3548 22 1 -3.5683 -5.0913 4.4796 23 1 -2.7516 -4.8715 6.7526 24 1 -2.8282 -2.9322 5.2991 25 6 0.7805 -5.1442 0.5211 26 6 1.6768 -6.3819 0.5973 27 6 -0.6866 -5.5714 0.5990 28 1 -0.5400 0.9352 -0.0005 29 1 -0.5400 -0.9353 0.0004 30 1 0.9524 2.9334 0.0004 31 1 2.8422 4.5068 0.0008 32 1 5.1543 3.6744 0.0020 33 1 5.6092 1.2596 0.0019 34 1 0.7238 -2.5653 -0.5349 35 1 2.4073 -3.1430 -0.5356 36 1 1.1034 -5.7921 3.0591 37 1 1.6472 -4.2074 3.6600 38 1 -0.2750 -5.6133 6.4693 39 1 0.9585 -4.6246 -0.4203 40 1 1.4992 -6.9016 1.5388 41 1 1.4481 -7.0479 -0.2347 42 1 2.7220 -6.0775 0.5418 43 1 -1.3251 -4.6898 0.5447 44 1 -0.9155 -6.2381 -0.2324 45 1 -0.8642 -6.0913 1.5405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750574731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:59 Heat of formation + Delta-G solvation = 1.841402 kcal Electronic energy + Delta-G solvation = -28216.133971 eV Core-core repulsion = 24392.953527 eV Total energy + Delta-G solvation = -3823.180444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58484 -39.24641 -38.10534 -36.72297 -35.90198 -32.93052 -32.21684 -31.71292 -30.87812 -30.09213 -28.73205 -26.86949 -26.56297 -23.74227 -23.49108 -22.43928 -21.49516 -21.31894 -19.50578 -18.13925 -17.35121 -17.11077 -16.58399 -16.45333 -16.11962 -15.28096 -15.00261 -14.84735 -14.50074 -14.33811 -14.12387 -13.92483 -13.74985 -13.51760 -13.25772 -12.83591 -12.80400 -12.49346 -12.34957 -12.00925 -11.87978 -11.72857 -11.62545 -11.47233 -11.27501 -11.20524 -10.95546 -10.87636 -10.61398 -10.41184 -10.05201 -10.03331 -9.58778 -9.45640 -9.24044 -8.81289 -8.42335 -8.00137 -7.69985 -6.03660 -4.07427 0.29816 0.95372 2.16012 2.58508 3.12874 3.28014 3.30509 3.35604 3.38630 3.66119 3.89562 3.98510 4.27344 4.43847 4.62331 4.74159 4.93818 5.01400 5.07506 5.15976 5.18630 5.26884 5.30560 5.39673 5.46457 5.53479 5.60016 5.66313 5.82113 5.85834 5.98500 6.03161 6.12525 6.14284 6.16392 6.22787 6.33027 6.57427 6.57501 6.72276 6.91873 7.05224 7.08170 7.46479 7.52561 7.91872 7.98886 8.24122 8.37114 8.88094 9.03061 9.56306 11.04555 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.003617 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.769976 B = 7738.923497 C = 8605.013999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.134 3.866 3 C -0.039 4.039 4 C -0.094 4.094 5 C -0.090 4.090 6 C -0.127 4.127 7 C -0.043 4.043 8 C -0.154 4.154 9 C 0.569 3.431 10 O -0.504 6.504 11 N -0.539 5.539 12 C 0.100 3.900 13 C 0.488 3.512 14 O -0.526 6.526 15 N -0.589 5.589 16 C 0.248 3.752 17 C -0.520 4.520 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.132 3.868 26 C -0.163 4.163 27 C -0.157 4.157 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.263 0.737 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 12.087 -16.760 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.040 3.960 3 C -0.040 4.040 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.145 4.145 7 C -0.062 4.062 8 C -0.157 4.157 9 C 0.359 3.641 10 O -0.380 6.380 11 N -0.261 5.261 12 C -0.024 4.024 13 C 0.272 3.728 14 O -0.402 6.402 15 N -0.322 5.322 16 C 0.129 3.871 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C 0.027 3.973 26 C -0.221 4.221 27 C -0.215 4.215 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.282 11.807 -16.061 20.202 hybrid contribution -1.133 -0.021 0.577 1.272 sum 2.149 11.786 -15.484 19.578 Atomic orbital electron populations 1.23787 0.91751 1.03867 1.03083 1.18385 0.91294 0.83916 1.02375 1.19463 0.93046 0.92892 0.98649 1.20574 0.99999 0.90234 1.00389 1.21258 0.92268 0.99855 0.97480 1.21181 0.97256 0.94896 1.01139 1.20753 0.98425 0.91976 0.95051 1.20535 0.94855 0.93988 1.06300 1.18082 0.82266 0.88089 0.75651 1.90807 1.39207 1.59549 1.48402 1.45148 1.06351 1.05127 1.69481 1.21545 1.02457 0.80753 0.97688 1.20516 0.78960 0.82915 0.90379 1.90711 1.50047 1.54235 1.45192 1.48345 1.63641 1.11023 1.09221 1.19251 0.97438 0.95149 0.75288 1.21367 0.97178 1.38854 0.98496 0.92435 1.24930 0.97528 0.95217 0.96448 1.69924 1.34814 1.40828 1.07778 0.86608 0.84560 0.78773 0.77762 1.20247 1.21243 1.20282 1.21033 0.95823 0.91409 0.89039 1.22165 0.99410 0.97690 1.02843 1.22142 0.94783 1.01513 1.03017 0.85439 0.86677 0.84891 0.84882 0.84897 0.84818 0.87183 0.86851 0.94633 0.94158 0.92711 0.91122 0.91150 0.92116 0.92761 0.92744 0.93107 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.26 29.11 0.42 -1.83 16 2 C 0.13 1.97 6.73 -82.15 -0.55 1.41 16 3 C -0.04 -0.52 6.28 -104.80 -0.66 -1.18 16 4 C -0.09 -0.93 10.08 -39.37 -0.40 -1.33 16 5 C -0.09 -0.75 10.03 -39.50 -0.40 -1.15 16 6 C -0.13 -1.13 10.02 -39.54 -0.40 -1.53 16 7 C -0.04 -0.51 10.09 -39.28 -0.40 -0.91 16 8 C -0.15 -2.30 6.36 -104.88 -0.67 -2.97 16 9 C 0.57 10.30 7.99 -12.78 -0.10 10.20 16 10 O -0.50 -10.42 17.71 5.24 0.09 -10.33 16 11 N -0.54 -9.07 2.25 -114.86 -0.26 -9.33 16 12 C 0.10 1.61 4.42 -5.20 -0.02 1.58 16 13 C 0.49 10.43 7.74 -10.99 -0.09 10.35 16 14 O -0.53 -13.86 16.01 5.56 0.09 -13.77 16 15 N -0.59 -12.36 2.39 -167.47 -0.40 -12.76 16 16 C 0.25 6.41 4.60 -5.19 -0.02 6.39 16 17 C -0.52 -14.30 7.83 -34.44 -0.27 -14.57 16 18 H 0.06 1.56 7.63 -52.49 -0.40 1.16 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 21 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.13 2.09 3.17 -67.93 -0.22 1.87 16 26 C -0.16 -2.40 9.17 37.16 0.34 -2.06 16 27 C -0.16 -2.46 8.47 37.16 0.31 -2.14 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.42 7.15 -52.49 -0.38 1.04 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.38 6.86 -51.93 -0.36 1.02 16 35 H 0.11 1.65 7.63 -51.93 -0.40 1.25 16 36 H 0.04 0.93 6.43 -51.93 -0.33 0.60 16 37 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.07 0.90 5.77 -51.93 -0.30 0.60 16 40 H 0.07 1.18 6.66 -51.93 -0.35 0.83 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -36.42 378.85 -8.45 -44.87 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.19 Total: 0.99 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -3.21 Total: 3.77 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.08 Total: -47.85 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.18 Total: -24.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.42 -8.45 -44.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750574731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.713 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds