Wall clock time and date at job start Tue Mar 31 2020 16:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33613 * 1 3 3 C 1.47608 * 126.11521 * 2 1 4 4 C 1.38932 * 133.93822 * 0.02562 * 3 2 1 5 5 C 1.38102 * 119.75355 * 179.97438 * 4 3 2 6 6 C 1.38604 * 120.49180 * 359.97438 * 5 4 3 7 7 C 1.37990 * 120.56031 * 359.97438 * 6 5 4 8 8 C 1.39290 * 119.76694 * 0.27661 * 7 6 5 9 9 C 1.47129 * 133.63391 * 179.74663 * 8 7 6 10 10 O 1.21641 * 125.44208 * 0.03288 * 9 8 7 11 11 N 1.34502 * 109.11364 * 179.97438 * 9 8 7 12 12 C 1.46504 * 124.94294 * 179.97438 * 11 9 8 13 13 C 1.50691 * 109.46983 * 89.97649 * 12 11 9 14 14 O 1.21282 * 120.00509 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99829 * 180.02562 * 13 12 11 16 16 C 1.46510 * 119.99995 * 179.97438 * 15 13 12 17 17 C 1.50691 * 109.47020 * 89.99632 * 16 15 13 18 18 H 1.08001 * 120.00707 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99809 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00030 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47148 * 60.00267 * 21 19 17 23 23 H 1.48499 * 109.46914 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47212 * 299.99954 * 21 19 17 25 25 C 1.46495 * 120.00038 * 359.97438 * 15 13 12 26 26 C 1.52996 * 109.47563 * 120.00379 * 25 15 13 27 27 C 1.53007 * 109.46780 * 240.00245 * 25 15 13 28 28 H 1.07993 * 120.00190 * 0.02975 * 1 2 3 29 29 H 1.08001 * 119.99970 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.12253 * 359.96709 * 4 3 2 31 31 H 1.08002 * 119.75598 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.71710 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.11108 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.46991 * 209.97678 * 12 11 9 35 35 H 1.08996 * 109.46646 * 329.97370 * 12 11 9 36 36 H 1.09001 * 109.46546 * 210.00051 * 16 15 13 37 37 H 1.09001 * 109.46533 * 329.99375 * 16 15 13 38 38 H 0.96998 * 120.00038 * 179.97438 * 20 19 17 39 39 H 1.08993 * 109.47246 * 0.02562 * 25 15 13 40 40 H 1.09002 * 109.46983 * 59.99344 * 26 25 15 41 41 H 1.09001 * 109.47664 * 180.02562 * 26 25 15 42 42 H 1.09003 * 109.46974 * 300.00060 * 26 25 15 43 43 H 1.08990 * 109.47231 * 60.00309 * 27 25 15 44 44 H 1.09001 * 109.46586 * 180.02562 * 27 25 15 45 45 H 1.08998 * 109.47302 * 299.99493 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1924 0.0000 4 6 1.9662 2.5609 0.0004 5 6 3.0287 3.4430 0.0008 6 6 4.3328 2.9733 0.0013 7 6 4.5902 1.6177 0.0019 8 6 3.5313 0.7127 -0.0037 9 6 3.4514 -0.7564 -0.0095 10 8 4.4026 -1.5146 -0.0099 11 7 2.1585 -1.1271 -0.0131 12 6 1.6829 -2.5128 -0.0198 13 6 1.5183 -2.9942 1.3987 14 8 1.7735 -2.2530 2.3241 15 7 1.0883 -4.2488 1.6389 16 6 0.9287 -4.7170 3.0180 17 6 -0.4699 -4.4167 3.4917 18 1 -1.1702 -3.9265 2.8316 19 6 -0.8560 -4.7686 4.7677 20 7 -0.0034 -5.3660 5.5715 21 14 -2.5900 -4.3970 5.3548 22 1 -3.5683 -5.0913 4.4796 23 1 -2.7516 -4.8715 6.7526 24 1 -2.8282 -2.9322 5.2991 25 6 0.7805 -5.1442 0.5211 26 6 1.6768 -6.3819 0.5973 27 6 -0.6866 -5.5714 0.5990 28 1 -0.5400 0.9352 -0.0005 29 1 -0.5400 -0.9353 0.0004 30 1 0.9524 2.9334 0.0004 31 1 2.8422 4.5068 0.0008 32 1 5.1543 3.6744 0.0020 33 1 5.6092 1.2596 0.0019 34 1 0.7238 -2.5653 -0.5349 35 1 2.4073 -3.1430 -0.5356 36 1 1.1034 -5.7921 3.0591 37 1 1.6472 -4.2074 3.6600 38 1 -0.2750 -5.6133 6.4693 39 1 0.9585 -4.6246 -0.4203 40 1 1.4992 -6.9016 1.5388 41 1 1.4481 -7.0479 -0.2347 42 1 2.7220 -6.0775 0.5418 43 1 -1.3251 -4.6898 0.5447 44 1 -0.9155 -6.2381 -0.2324 45 1 -0.8642 -6.0913 1.5405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750574731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:58 Heat of formation + Delta-G solvation = -21.289249 kcal Electronic energy + Delta-G solvation = -28217.136991 eV Core-core repulsion = 24392.953527 eV Total energy + Delta-G solvation = -3824.183464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.69439 -40.81567 -39.17607 -37.99124 -37.47734 -34.98538 -33.38031 -32.65579 -32.48944 -30.98950 -30.27802 -28.39905 -27.95557 -25.21333 -24.61055 -23.80533 -22.78555 -22.50704 -20.64019 -19.59516 -18.65327 -18.61284 -18.31636 -17.79298 -17.18774 -16.74144 -16.57343 -16.28117 -15.89344 -15.57992 -15.21101 -14.99689 -14.91405 -14.81508 -14.66835 -14.43465 -14.01314 -13.78903 -13.42447 -13.38680 -13.26743 -13.15215 -12.92164 -12.84014 -12.76320 -12.60819 -12.53246 -12.28162 -12.11070 -12.10030 -11.72454 -11.57100 -11.27064 -10.90860 -10.62182 -10.16215 -9.94757 -9.51511 -9.06180 -8.20532 -6.33219 -0.65072 0.14942 1.22670 1.35557 1.39459 1.40604 1.47360 1.64795 1.95009 2.29827 2.44300 2.80195 3.05478 3.09500 3.27111 3.50478 3.81798 3.86211 3.91164 4.02517 4.14150 4.24605 4.31971 4.33500 4.36862 4.48196 4.63248 4.78844 4.81350 4.84168 4.91015 4.96876 5.01782 5.03565 5.08575 5.16215 5.18424 5.34852 5.39205 5.40407 5.55760 5.61525 5.68987 5.82751 5.84812 5.93341 6.07597 6.62505 6.74798 6.77406 7.24388 7.39981 8.87351 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.003617 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.769976 B = 7738.923497 C = 8605.013999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 C -0.051 4.051 4 C -0.093 4.093 5 C -0.074 4.074 6 C -0.120 4.120 7 C -0.057 4.057 8 C -0.197 4.197 9 C 0.551 3.449 10 O -0.556 6.556 11 N -0.545 5.545 12 C 0.109 3.891 13 C 0.479 3.521 14 O -0.589 6.589 15 N -0.591 5.591 16 C 0.266 3.734 17 C -0.524 4.524 18 H 0.061 0.939 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.256 1.256 23 H -0.284 1.284 24 H -0.277 1.277 25 C 0.121 3.879 26 C -0.159 4.159 27 C -0.150 4.150 28 H 0.163 0.837 29 H 0.114 0.886 30 H 0.165 0.835 31 H 0.178 0.822 32 H 0.168 0.832 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.128 0.872 36 H 0.026 0.974 37 H -0.017 1.017 38 H 0.265 0.735 39 H 0.114 0.886 40 H 0.040 0.960 41 H 0.102 0.898 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 14.659 -19.267 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.004 3.996 3 C -0.053 4.053 4 C -0.111 4.111 5 C -0.092 4.092 6 C -0.137 4.137 7 C -0.076 4.076 8 C -0.200 4.200 9 C 0.343 3.657 10 O -0.436 6.436 11 N -0.266 5.266 12 C -0.015 4.015 13 C 0.266 3.734 14 O -0.469 6.469 15 N -0.323 5.323 16 C 0.145 3.855 17 C -0.563 4.563 18 H 0.079 0.921 19 C -0.195 4.195 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.181 1.181 23 H -0.209 1.209 24 H -0.203 1.203 25 C 0.019 3.981 26 C -0.217 4.217 27 C -0.208 4.208 28 H 0.181 0.819 29 H 0.132 0.868 30 H 0.183 0.817 31 H 0.195 0.805 32 H 0.186 0.814 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.146 0.854 36 H 0.044 0.956 37 H 0.001 0.999 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.059 0.941 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.694 14.372 -18.629 23.539 hybrid contribution -0.340 -0.760 1.338 1.576 sum 0.355 13.612 -17.291 22.009 Atomic orbital electron populations 1.24224 0.90897 1.05514 0.99492 1.18819 0.92138 0.83796 1.04851 1.19657 0.91806 0.94101 0.99715 1.21046 1.02259 0.88678 0.99137 1.21829 0.91265 1.01779 0.94349 1.21619 0.99082 0.93777 0.99255 1.21009 0.97856 0.93256 0.95494 1.20571 0.96961 0.92395 1.10105 1.18808 0.82282 0.89699 0.74862 1.90740 1.40547 1.60967 1.51358 1.45295 1.06545 1.05820 1.68985 1.21586 1.04967 0.81193 0.93771 1.21528 0.77386 0.82265 0.92239 1.90669 1.52590 1.55976 1.47668 1.48386 1.63256 1.11970 1.08683 1.18647 0.95487 0.93692 0.77650 1.21599 0.97539 1.38346 0.98803 0.92128 1.25879 1.01977 0.94976 0.96641 1.70073 1.37068 1.42066 1.08152 0.85501 0.79544 0.78458 0.77530 1.18062 1.20902 1.20284 1.21508 0.96453 0.91415 0.88710 1.22143 0.98946 0.97631 1.02959 1.22072 0.94201 1.01806 1.02699 0.81931 0.86782 0.81713 0.80510 0.81417 0.85000 0.82981 0.85428 0.95628 0.99938 0.92666 0.86791 0.94122 0.87965 0.93249 0.92980 0.88847 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 14.26 66.77 0.95 -2.60 16 2 C 0.10 2.76 6.73 39.34 0.26 3.03 16 3 C -0.05 -1.33 6.28 -19.98 -0.13 -1.45 16 4 C -0.09 -1.54 10.08 22.40 0.23 -1.31 16 5 C -0.07 -0.92 10.03 22.32 0.22 -0.69 16 6 C -0.12 -1.80 10.02 22.30 0.22 -1.57 16 7 C -0.06 -1.36 10.09 22.46 0.23 -1.14 16 8 C -0.20 -6.11 6.36 -20.03 -0.13 -6.24 16 9 C 0.55 21.25 7.99 86.62 0.69 21.94 16 10 O -0.56 -24.97 17.71 -4.16 -0.07 -25.04 16 11 N -0.54 -18.77 2.25 -635.71 -1.43 -20.20 16 12 C 0.11 3.48 4.42 85.63 0.38 3.86 16 13 C 0.48 21.26 7.74 87.65 0.68 21.94 16 14 O -0.59 -33.08 16.01 -3.04 -0.05 -33.13 16 15 N -0.59 -25.65 2.39 -802.15 -1.91 -27.56 16 16 C 0.27 14.70 4.60 85.63 0.39 15.09 16 17 C -0.52 -29.82 7.83 25.60 0.20 -29.62 16 18 H 0.06 3.33 7.63 -2.91 -0.02 3.31 16 19 C 0.00 0.20 5.46 84.66 0.46 0.67 16 20 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 21 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C 0.12 3.73 3.17 44.99 0.14 3.87 16 26 C -0.16 -4.59 9.17 71.98 0.66 -3.93 16 27 C -0.15 -4.44 8.47 71.98 0.61 -3.83 16 28 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.11 2.51 7.15 -2.91 -0.02 2.49 16 30 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 32 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.15 3.44 6.86 -2.39 -0.02 3.42 16 35 H 0.13 3.67 7.63 -2.39 -0.02 3.66 16 36 H 0.03 1.45 6.43 -2.39 -0.02 1.43 16 37 H -0.02 -1.16 7.42 -2.39 -0.02 -1.17 16 38 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.11 2.55 5.77 -2.39 -0.01 2.53 16 40 H 0.04 1.40 6.66 -2.39 -0.02 1.39 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.67 6.92 -2.39 -0.02 1.65 16 Total: -1.00 -89.80 378.85 5.93 -83.87 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.00 Total: 14.50 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 6.08 Total: 18.01 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -3.06 Total: -105.07 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.12 Total: -58.17 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -89.80 5.93 -83.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750574731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.585 kcal (2) G-P(sol) polarization free energy of solvation -89.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds