Wall clock time and date at job start Tue Mar 31 2020 16:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47339 * 2 1 4 4 N 1.46501 * 109.47197 * 120.00421 * 2 1 3 5 5 N 1.39907 * 125.79307 * 300.01965 * 4 2 1 6 6 C 1.30442 * 109.23634 * 180.02562 * 5 4 2 7 7 C 1.41142 * 108.29657 * 0.02562 * 6 5 4 8 8 C 1.47016 * 126.49669 * 179.97438 * 7 6 5 9 9 O 1.21557 * 120.00699 * 179.75061 * 8 7 6 10 10 O 1.34813 * 119.99832 * 0.02655 * 8 7 6 11 11 C 1.45198 * 116.99856 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46982 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47462 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99475 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00497 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99677 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00384 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46528 * 60.00483 * 17 15 13 19 19 H 1.48503 * 109.47157 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47018 * 300.00577 * 17 15 13 21 21 C 1.35152 * 125.79561 * 120.30152 * 4 2 1 22 22 C 1.47727 * 126.47851 * 359.97438 * 21 4 2 23 23 C 1.39621 * 120.14516 * 314.91952 * 22 21 4 24 24 C 1.37950 * 119.84105 * 179.72329 * 23 22 21 25 25 C 1.38363 * 120.15217 * 0.52797 * 24 23 22 26 26 C 1.38369 * 120.30099 * 359.77078 * 25 24 23 27 27 C 1.37945 * 120.15160 * 359.95066 * 26 25 24 28 28 H 1.09000 * 109.47024 * 299.99782 * 1 2 3 29 29 H 1.08997 * 109.47308 * 59.99526 * 1 2 3 30 30 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47024 * 240.00218 * 2 1 3 32 32 H 1.09000 * 109.46884 * 60.00132 * 3 2 1 33 33 H 1.08999 * 109.47524 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47308 * 300.00474 * 3 2 1 35 35 H 1.08004 * 125.85056 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.47072 * 299.99716 * 11 10 8 37 37 H 1.09006 * 109.47220 * 60.00198 * 11 10 8 38 38 H 1.08997 * 109.47145 * 300.00478 * 12 11 10 39 39 H 1.09006 * 109.46544 * 60.00319 * 12 11 10 40 40 H 0.96996 * 119.99888 * 179.97438 * 16 15 13 41 41 H 1.07995 * 120.08109 * 359.97438 * 23 22 21 42 42 H 1.07997 * 119.92511 * 180.27590 * 24 23 22 43 43 H 1.07998 * 119.84905 * 179.74269 * 25 24 23 44 44 H 1.07995 * 119.92575 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.07646 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7558 -0.3202 2.5194 6 6 2.3484 -1.1571 3.3257 7 6 3.0289 -2.1169 2.5461 8 6 3.8280 -3.2441 3.0483 9 8 4.3627 -4.0062 2.2667 10 8 3.9632 -3.4359 4.3758 11 6 4.7659 -4.5691 4.7998 12 6 4.8044 -4.6234 6.3283 13 6 5.6370 -5.7999 6.7684 14 1 6.0934 -6.4442 6.0315 15 6 5.8161 -6.0539 8.1116 16 7 5.2598 -5.2695 9.0090 17 14 6.8475 -7.5126 8.6571 18 1 8.2290 -7.3657 8.1325 19 1 6.8849 -7.5652 10.1407 20 1 6.2491 -8.7660 8.1317 21 6 2.8033 -1.7908 1.2086 22 6 3.3223 -2.5128 0.0289 23 6 2.4783 -2.7971 -1.0464 24 6 2.9710 -3.4666 -2.1474 25 6 4.2953 -3.8658 -2.1828 26 6 5.1355 -3.5927 -1.1179 27 6 4.6575 -2.9189 -0.0132 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 2.3226 -1.1216 4.4048 36 1 4.3275 -5.4894 4.4141 37 1 5.7799 -4.4604 4.4148 38 1 5.2430 -3.7030 6.7137 39 1 3.7905 -4.7319 6.7136 40 1 5.3855 -5.4484 9.9540 41 1 1.4433 -2.4901 -1.0182 42 1 2.3205 -3.6833 -2.9818 43 1 4.6748 -4.3933 -3.0454 44 1 6.1681 -3.9074 -1.1518 45 1 5.3144 -2.7060 0.8171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753617062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:43 Heat of formation + Delta-G solvation = 2.676427 kcal Electronic energy + Delta-G solvation = -27319.810535 eV Core-core repulsion = 23496.666301 eV Total energy + Delta-G solvation = -3823.144234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64988 -39.36786 -38.98537 -36.09228 -35.76124 -33.28528 -32.65601 -31.14459 -30.69779 -30.00430 -29.07884 -27.71542 -25.27883 -23.93580 -23.27012 -22.51563 -22.34475 -20.84361 -19.88572 -19.67189 -17.84534 -17.03375 -16.52139 -16.08181 -15.93938 -15.69792 -15.33651 -15.18500 -14.78810 -14.66692 -14.47334 -14.10882 -13.61727 -13.46489 -13.16561 -12.99695 -12.89022 -12.79461 -12.59248 -12.50541 -12.31180 -11.78828 -11.71026 -11.61597 -11.31123 -11.10763 -11.03357 -10.88617 -10.65260 -10.61794 -10.05760 -9.89519 -9.56333 -9.54490 -9.26590 -9.10729 -9.00570 -8.45081 -8.39367 -6.06272 -4.10337 0.62377 1.25595 1.65237 2.08034 2.14460 3.32711 3.33822 3.36939 3.43930 3.46855 3.63477 4.08788 4.13586 4.43223 4.45947 4.56303 4.66530 4.73512 4.80569 4.93132 5.11794 5.12196 5.20411 5.21985 5.26367 5.30177 5.31428 5.36693 5.46579 5.65669 5.73376 5.75952 5.80683 5.88496 6.17976 6.18317 6.20291 6.30505 6.34831 6.41493 6.66415 6.71968 6.76941 7.11302 7.45937 7.62281 7.69062 7.92426 8.27032 8.42472 8.95160 9.53683 11.05278 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.002805 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.824018 B = 9981.066732 C =11476.282129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.161 4.161 4 N -0.348 5.348 5 N -0.293 5.293 6 C 0.105 3.895 7 C -0.263 4.263 8 C 0.534 3.466 9 O -0.521 6.521 10 O -0.353 6.353 11 C 0.079 3.921 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.196 3.804 22 C -0.051 4.051 23 C -0.103 4.103 24 C -0.130 4.130 25 C -0.103 4.103 26 C -0.123 4.123 27 C -0.037 4.037 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.202 0.798 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 11.797 -24.631 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 C -0.219 4.219 4 N -0.128 5.128 5 N -0.111 5.111 6 C -0.082 4.082 7 C -0.276 4.276 8 C 0.379 3.621 9 O -0.412 6.412 10 O -0.269 6.269 11 C 0.006 3.994 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.064 3.936 22 C -0.053 4.053 23 C -0.122 4.122 24 C -0.148 4.148 25 C -0.121 4.121 26 C -0.141 4.141 27 C -0.056 4.056 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.218 0.782 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.480 12.738 -24.785 29.128 hybrid contribution 1.064 -1.727 0.574 2.108 sum -7.417 11.011 -24.211 27.612 Atomic orbital electron populations 1.22150 0.92781 1.03214 1.03820 1.21566 0.95908 0.94272 0.83669 1.22131 1.02006 0.94050 1.03679 1.48896 1.37350 1.20236 1.06289 1.77127 1.24489 1.23704 0.85819 1.24203 0.92830 0.90455 1.00675 1.19374 1.13871 1.03176 0.91131 1.19846 0.77761 0.82795 0.81716 1.90802 1.47055 1.46050 1.57318 1.86575 1.66803 1.50603 1.22882 1.23592 0.92367 0.84069 0.99348 1.19158 0.98465 0.98058 0.85542 1.20949 1.31826 1.11623 0.91986 0.92343 1.24975 0.95847 0.96744 0.96569 1.69967 1.43821 1.37906 1.01198 0.86547 0.80712 0.82692 0.77426 1.20091 1.21152 1.20088 1.19713 0.92079 0.88365 0.93451 1.17926 0.94522 1.01377 0.91521 1.21174 0.98804 0.99123 0.93066 1.20964 0.95919 0.99727 0.98168 1.21304 0.93774 0.98504 0.98503 1.21125 1.00405 0.99084 0.93482 1.21263 0.93893 0.93575 0.96849 0.90654 0.90380 0.91942 0.87557 0.90743 0.91900 0.90462 0.78178 0.92417 0.92422 0.95356 0.95368 0.92693 0.86172 0.85710 0.85832 0.85424 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.45 37.15 0.35 -0.76 16 2 C 0.15 1.21 3.19 -67.93 -0.22 1.00 16 3 C -0.16 -1.15 9.45 37.16 0.35 -0.80 16 4 N -0.35 -4.20 3.28 -50.57 -0.17 -4.36 16 5 N -0.29 -3.98 12.31 30.83 0.38 -3.60 16 6 C 0.10 1.51 11.84 -17.04 -0.20 1.31 16 7 C -0.26 -4.22 6.12 -104.77 -0.64 -4.86 16 8 C 0.53 10.10 7.83 34.29 0.27 10.37 16 9 O -0.52 -10.41 12.76 -19.31 -0.25 -10.66 16 10 O -0.35 -7.34 10.07 -40.80 -0.41 -7.75 16 11 C 0.08 1.79 5.42 37.16 0.20 1.99 16 12 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 13 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 17 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.20 2.72 6.51 -82.06 -0.53 2.19 16 22 C -0.05 -0.66 5.14 -104.99 -0.54 -1.20 16 23 C -0.10 -1.05 8.13 -39.17 -0.32 -1.37 16 24 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 25 C -0.10 -0.94 10.04 -39.49 -0.40 -1.34 16 26 C -0.12 -1.35 10.03 -39.64 -0.40 -1.75 16 27 C -0.04 -0.49 7.54 -39.17 -0.30 -0.78 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.76 5.56 -51.93 -0.29 0.47 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.20 2.54 8.06 -52.48 -0.42 2.12 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.12 1.01 7.19 -52.49 -0.38 0.63 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 45 H 0.13 1.93 6.78 -52.49 -0.36 1.58 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -32.94 382.41 -8.77 -41.72 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.48 Total: -1.16 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.33 Total: -10.65 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.95 Total: -33.84 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.66 Total: -18.40 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.94 -8.77 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753617062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.394 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds