Wall clock time and date at job start Tue Mar 31 2020 16:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47339 * 2 1 4 4 N 1.46501 * 109.47197 * 120.00421 * 2 1 3 5 5 N 1.39907 * 125.79307 * 300.01965 * 4 2 1 6 6 C 1.30442 * 109.23634 * 180.02562 * 5 4 2 7 7 C 1.41142 * 108.29657 * 0.02562 * 6 5 4 8 8 C 1.47016 * 126.49669 * 179.97438 * 7 6 5 9 9 O 1.21557 * 120.00699 * 179.75061 * 8 7 6 10 10 O 1.34813 * 119.99832 * 0.02655 * 8 7 6 11 11 C 1.45198 * 116.99856 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46982 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47462 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99475 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00497 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99677 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00384 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46528 * 60.00483 * 17 15 13 19 19 H 1.48503 * 109.47157 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47018 * 300.00577 * 17 15 13 21 21 C 1.35152 * 125.79561 * 120.30152 * 4 2 1 22 22 C 1.47727 * 126.47851 * 359.97438 * 21 4 2 23 23 C 1.39621 * 120.14516 * 314.91952 * 22 21 4 24 24 C 1.37950 * 119.84105 * 179.72329 * 23 22 21 25 25 C 1.38363 * 120.15217 * 0.52797 * 24 23 22 26 26 C 1.38369 * 120.30099 * 359.77078 * 25 24 23 27 27 C 1.37945 * 120.15160 * 359.95066 * 26 25 24 28 28 H 1.09000 * 109.47024 * 299.99782 * 1 2 3 29 29 H 1.08997 * 109.47308 * 59.99526 * 1 2 3 30 30 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47024 * 240.00218 * 2 1 3 32 32 H 1.09000 * 109.46884 * 60.00132 * 3 2 1 33 33 H 1.08999 * 109.47524 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47308 * 300.00474 * 3 2 1 35 35 H 1.08004 * 125.85056 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.47072 * 299.99716 * 11 10 8 37 37 H 1.09006 * 109.47220 * 60.00198 * 11 10 8 38 38 H 1.08997 * 109.47145 * 300.00478 * 12 11 10 39 39 H 1.09006 * 109.46544 * 60.00319 * 12 11 10 40 40 H 0.96996 * 119.99888 * 179.97438 * 16 15 13 41 41 H 1.07995 * 120.08109 * 359.97438 * 23 22 21 42 42 H 1.07997 * 119.92511 * 180.27590 * 24 23 22 43 43 H 1.07998 * 119.84905 * 179.74269 * 25 24 23 44 44 H 1.07995 * 119.92575 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.07646 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7558 -0.3202 2.5194 6 6 2.3484 -1.1571 3.3257 7 6 3.0289 -2.1169 2.5461 8 6 3.8280 -3.2441 3.0483 9 8 4.3627 -4.0062 2.2667 10 8 3.9632 -3.4359 4.3758 11 6 4.7659 -4.5691 4.7998 12 6 4.8044 -4.6234 6.3283 13 6 5.6370 -5.7999 6.7684 14 1 6.0934 -6.4442 6.0315 15 6 5.8161 -6.0539 8.1116 16 7 5.2598 -5.2695 9.0090 17 14 6.8475 -7.5126 8.6571 18 1 8.2290 -7.3657 8.1325 19 1 6.8849 -7.5652 10.1407 20 1 6.2491 -8.7660 8.1317 21 6 2.8033 -1.7908 1.2086 22 6 3.3223 -2.5128 0.0289 23 6 2.4783 -2.7971 -1.0464 24 6 2.9710 -3.4666 -2.1474 25 6 4.2953 -3.8658 -2.1828 26 6 5.1355 -3.5927 -1.1179 27 6 4.6575 -2.9189 -0.0132 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 2.3226 -1.1216 4.4048 36 1 4.3275 -5.4894 4.4141 37 1 5.7799 -4.4604 4.4148 38 1 5.2430 -3.7030 6.7137 39 1 3.7905 -4.7319 6.7136 40 1 5.3855 -5.4484 9.9540 41 1 1.4433 -2.4901 -1.0182 42 1 2.3205 -3.6833 -2.9818 43 1 4.6748 -4.3933 -3.0454 44 1 6.1681 -3.9074 -1.1518 45 1 5.3144 -2.7060 0.8171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753617062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:42 Heat of formation + Delta-G solvation = -14.382330 kcal Electronic energy + Delta-G solvation = -27320.550259 eV Core-core repulsion = 23496.666301 eV Total energy + Delta-G solvation = -3823.883958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.71858 -40.91756 -39.81442 -37.53904 -36.72346 -35.41904 -33.58281 -32.44595 -31.94302 -31.28569 -30.15744 -28.27057 -27.18077 -25.18291 -24.20005 -23.59943 -23.26137 -22.76167 -21.10972 -20.66494 -18.97933 -18.55323 -17.92616 -17.52225 -17.27542 -17.14215 -16.48574 -16.43922 -16.05424 -15.62773 -15.39629 -15.04017 -14.93297 -14.52847 -14.40170 -14.28821 -14.13337 -13.93432 -13.72171 -13.24619 -13.15517 -13.07294 -13.02796 -12.65919 -12.55938 -12.47958 -12.42177 -12.36735 -12.06245 -11.90306 -11.69283 -11.48666 -11.40606 -11.24740 -10.86832 -10.59734 -10.07990 -9.86736 -9.45908 -8.25769 -6.39122 -0.34761 0.44186 0.63344 0.94566 1.13519 1.41213 1.45185 1.53065 1.89373 2.11175 2.41629 2.79216 3.08394 3.19122 3.29619 3.77396 3.82908 3.85174 3.93911 3.99298 4.05192 4.19841 4.23129 4.25907 4.28602 4.45660 4.49551 4.59574 4.64158 4.68022 4.73697 4.75529 4.76411 4.91221 5.06558 5.11032 5.18319 5.27418 5.33925 5.41490 5.46097 5.48697 5.54635 5.58498 5.75305 5.77285 5.98369 6.07985 6.36456 6.73610 6.86185 7.30423 8.86840 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.002805 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.824018 B = 9981.066732 C =11476.282129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 C -0.157 4.157 4 N -0.337 5.337 5 N -0.297 5.297 6 C 0.100 3.900 7 C -0.299 4.299 8 C 0.532 3.468 9 O -0.535 6.535 10 O -0.362 6.362 11 C 0.096 3.904 12 C 0.032 3.968 13 C -0.550 4.550 14 H 0.065 0.935 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.974 3.026 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.207 3.793 22 C -0.075 4.075 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.096 4.096 26 C -0.134 4.134 27 C -0.062 4.062 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.208 0.792 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.268 0.732 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.137 0.863 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 11.348 -27.813 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 C -0.215 4.215 4 N -0.115 5.115 5 N -0.116 5.116 6 C -0.086 4.086 7 C -0.311 4.311 8 C 0.379 3.621 9 O -0.427 6.427 10 O -0.278 6.278 11 C 0.023 3.977 12 C -0.005 4.005 13 C -0.588 4.588 14 H 0.083 0.917 15 C -0.193 4.193 16 N -0.566 5.566 17 Si 0.797 3.203 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.190 1.190 21 C 0.073 3.927 22 C -0.077 4.077 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.114 4.114 26 C -0.152 4.152 27 C -0.081 4.081 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.225 0.775 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.158 0.842 42 H 0.179 0.821 43 H 0.173 0.827 44 H 0.155 0.845 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.169 12.324 -27.994 31.932 hybrid contribution 1.215 -1.492 1.389 2.373 sum -7.955 10.832 -26.605 29.807 Atomic orbital electron populations 1.22151 0.91263 1.03255 1.04762 1.22074 0.97100 0.94736 0.82554 1.22132 1.01263 0.93385 1.04675 1.49319 1.36077 1.19391 1.06748 1.77087 1.24463 1.23466 0.86613 1.24334 0.92758 0.90260 1.01254 1.19322 1.15673 1.03500 0.92655 1.20282 0.77767 0.83456 0.80606 1.90782 1.47867 1.46872 1.57192 1.86556 1.66778 1.49852 1.24629 1.23116 0.92861 0.84903 0.96860 1.18965 0.96689 0.96793 0.88039 1.21346 1.32389 1.12324 0.92755 0.91673 1.25973 0.96966 0.99852 0.96509 1.70097 1.45051 1.39804 1.01695 0.85376 0.79050 0.78745 0.77137 1.18990 1.20440 1.19025 1.19926 0.91172 0.88393 0.93169 1.18036 0.94849 1.02711 0.92128 1.21435 0.99322 0.98745 0.92442 1.21417 0.96180 0.97953 0.98437 1.21708 0.93753 0.97438 0.98516 1.21335 1.01454 0.98938 0.93517 1.21172 0.94190 0.95547 0.97232 0.92102 0.87029 0.92329 0.85856 0.92037 0.93050 0.87147 0.77503 0.92436 0.92239 0.97540 0.97623 0.92336 0.84203 0.82060 0.82687 0.84516 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.45 71.98 0.68 -1.07 16 2 C 0.13 1.95 3.19 44.99 0.14 2.09 16 3 C -0.16 -1.96 9.45 71.98 0.68 -1.28 16 4 N -0.34 -7.97 3.28 -313.90 -1.03 -8.99 16 5 N -0.30 -8.19 12.31 -56.37 -0.69 -8.88 16 6 C 0.10 3.03 11.84 85.61 1.01 4.04 16 7 C -0.30 -10.05 6.12 -19.96 -0.12 -10.18 16 8 C 0.53 21.27 7.83 70.12 0.55 21.81 16 9 O -0.54 -22.43 12.76 19.65 0.25 -22.18 16 10 O -0.36 -15.92 10.07 -57.25 -0.58 -16.50 16 11 C 0.10 4.56 5.42 71.98 0.39 4.95 16 12 C 0.03 1.80 5.35 29.85 0.16 1.96 16 13 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 14 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 17 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 C 0.21 5.84 6.51 41.45 0.27 6.11 16 22 C -0.08 -1.89 5.14 -20.10 -0.10 -2.00 16 23 C -0.10 -1.80 8.13 22.54 0.18 -1.62 16 24 C -0.12 -1.69 10.03 22.23 0.22 -1.47 16 25 C -0.10 -1.47 10.04 22.33 0.22 -1.25 16 26 C -0.13 -2.84 10.03 22.23 0.22 -2.62 16 27 C -0.06 -1.69 7.54 22.53 0.17 -1.52 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.12 1.40 5.56 -2.39 -0.01 1.39 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.21 5.65 8.06 -2.91 -0.02 5.62 16 36 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.14 1.88 7.19 -2.91 -0.02 1.86 16 42 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 44 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 45 H 0.10 3.31 6.78 -2.91 -0.02 3.29 16 Total: -1.00 -73.94 382.41 6.63 -67.31 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.99 Total: 12.19 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 5.38 Total: -12.98 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -1.44 Total: -74.22 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.33 Total: -38.68 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -73.94 6.63 -67.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753617062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.931 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds