Wall clock time and date at job start Tue Mar 31 2020 15:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.08991 * 109.47156 * 54.99809 * 3 2 1 5 5 C 1.50704 * 109.47127 * 174.99898 * 3 2 1 6 6 H 1.08007 * 119.99897 * 119.99632 * 5 3 2 7 7 C 1.37872 * 120.00029 * 300.00063 * 5 3 2 8 8 N 1.31510 * 119.99960 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00077 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46958 * 119.99669 * 9 7 5 12 12 H 1.48494 * 109.47020 * 239.99661 * 9 7 5 13 13 O 1.45197 * 109.46795 * 294.99672 * 3 2 1 14 14 C 1.34806 * 116.99969 * 90.00481 * 13 3 2 15 15 O 1.21556 * 119.99719 * 359.97438 * 14 13 3 16 16 C 1.47013 * 119.99758 * 179.97438 * 14 13 3 17 17 C 1.41147 * 126.49731 * 359.68341 * 16 14 13 18 18 N 1.30449 * 108.29334 * 179.88054 * 17 16 14 19 19 N 1.39906 * 109.23692 * 0.38273 * 18 17 16 20 20 C 1.46499 * 125.79151 * 179.77162 * 19 18 17 21 21 C 1.53002 * 109.47454 * 269.68620 * 20 19 18 22 22 C 1.35146 * 108.41155 * 359.75535 * 19 18 17 23 23 C 1.47726 * 126.47717 * 179.97438 * 22 19 18 24 24 C 1.39628 * 120.14674 * 235.56818 * 23 22 19 25 25 C 1.37944 * 119.84338 * 179.79236 * 24 23 22 26 26 C 1.38372 * 120.15043 * 0.46033 * 25 24 23 27 27 C 1.38357 * 120.30319 * 359.78942 * 26 25 24 28 28 C 1.37945 * 120.14968 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47319 * 60.00533 * 1 2 3 30 30 H 1.08998 * 109.47275 * 299.99826 * 1 2 3 31 31 H 1.09002 * 109.46763 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47280 * 119.99377 * 2 1 3 33 33 H 1.09001 * 109.47705 * 239.99564 * 2 1 3 34 34 H 0.97001 * 119.99850 * 180.02562 * 8 7 5 35 35 H 1.07997 * 125.85104 * 0.03802 * 17 16 14 36 36 H 1.09001 * 109.47459 * 29.68301 * 20 19 18 37 37 H 1.09001 * 109.47231 * 149.68563 * 20 19 18 38 38 H 1.09004 * 109.47292 * 178.43352 * 21 20 19 39 39 H 1.08998 * 109.47051 * 298.43161 * 21 20 19 40 40 H 1.08997 * 109.46995 * 58.42693 * 21 20 19 41 41 H 1.07991 * 120.07331 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.92563 * 180.22856 * 25 24 23 43 43 H 1.08000 * 119.84504 * 179.76644 * 26 25 24 44 44 H 1.08000 * 119.92770 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.07813 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1733 9 14 6.0049 0.8815 1.3819 10 1 6.5987 1.5465 0.1943 11 1 6.3989 1.6170 2.6103 12 1 6.4971 -0.5172 1.4631 13 8 1.6558 2.0916 -1.2407 14 6 0.4676 2.7281 -1.2561 15 8 -0.2286 2.7397 -0.2597 16 6 0.0137 3.4080 -2.4780 17 6 0.7100 3.4860 -3.7033 18 7 -0.0169 4.1685 -4.5445 19 7 -1.1994 4.5687 -3.9130 20 6 -2.2722 5.3576 -4.5236 21 6 -2.0055 6.8463 -4.2926 22 6 -1.1841 4.1037 -2.6441 23 6 -2.2366 4.2961 -1.6255 24 6 -1.9216 4.8676 -0.3911 25 6 -2.9101 5.0484 0.5539 26 6 -4.2094 4.6560 0.2844 27 6 -4.5273 4.0843 -0.9348 28 6 -3.5495 3.9021 -1.8907 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.8292 -0.0602 2.9502 35 1 1.6774 3.0526 -3.9098 36 1 -2.3067 5.1566 -5.5944 37 1 -3.2260 5.0850 -4.0718 38 1 -2.7889 7.4343 -4.7708 39 1 -1.9987 7.0524 -3.2223 40 1 -1.0389 7.1129 -4.7200 41 1 -0.9073 5.1709 -0.1782 42 1 -2.6687 5.4937 1.5078 43 1 -4.9787 4.7964 1.0292 44 1 -5.5433 3.7798 -1.1386 45 1 -3.7991 3.4561 -2.8421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755851513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:49 Heat of formation + Delta-G solvation = 7.104280 kcal Electronic energy + Delta-G solvation = -28317.661785 eV Core-core repulsion = 24494.709557 eV Total energy + Delta-G solvation = -3822.952228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39172 -39.02926 -38.82353 -35.55728 -34.69283 -33.36515 -32.33115 -31.29008 -30.97250 -29.78198 -28.98775 -27.17262 -24.66847 -23.35601 -23.00198 -22.58485 -22.09457 -20.60962 -19.73662 -19.19189 -17.70534 -16.74031 -16.53281 -16.07202 -15.66887 -15.36891 -14.87275 -14.73152 -14.71938 -14.48913 -14.31806 -13.87870 -13.46085 -13.17975 -12.92820 -12.79273 -12.67543 -12.63400 -12.34001 -11.94478 -11.64410 -11.49104 -11.36600 -11.25674 -11.16150 -11.04726 -10.92061 -10.79139 -10.55387 -10.21231 -9.70194 -9.64679 -9.47914 -9.25819 -8.93077 -8.86010 -8.69244 -8.39569 -8.33341 -6.12846 -4.19055 0.88866 1.40451 1.73453 2.28634 2.35755 3.26963 3.33992 3.39053 3.72714 3.85139 3.88608 4.27554 4.34952 4.47831 4.68673 4.80726 4.90331 4.91841 5.01013 5.08168 5.19367 5.26984 5.33401 5.41489 5.44960 5.52970 5.64667 5.78103 5.83693 6.00017 6.15806 6.31978 6.32879 6.40587 6.45235 6.48480 6.53091 6.61923 6.80496 6.91738 6.98347 7.07655 7.27119 7.37377 7.60736 7.69304 7.82858 8.05381 8.24659 8.76833 9.03251 9.46233 10.93955 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.003710 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.100244 B = 7544.848967 C = 8585.920710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.047 0.953 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.908 3.092 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.352 6.352 14 C 0.528 3.472 15 O -0.516 6.516 16 C -0.253 4.253 17 C 0.103 3.897 18 N -0.300 5.300 19 N -0.356 5.356 20 C 0.124 3.876 21 C -0.170 4.170 22 C 0.188 3.812 23 C -0.038 4.038 24 C -0.044 4.044 25 C -0.119 4.119 26 C -0.106 4.106 27 C -0.127 4.127 28 C -0.102 4.102 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.200 0.800 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 10.635 -9.638 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.065 0.935 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.269 6.269 14 C 0.373 3.627 15 O -0.407 6.407 16 C -0.265 4.265 17 C -0.084 4.084 18 N -0.119 5.119 19 N -0.135 5.135 20 C 0.003 3.997 21 C -0.228 4.228 22 C 0.057 3.943 23 C -0.040 4.040 24 C -0.063 4.063 25 C -0.137 4.137 26 C -0.124 4.124 27 C -0.145 4.145 28 C -0.120 4.120 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.971 11.059 -10.450 22.059 hybrid contribution 1.036 -0.618 1.053 1.601 sum -14.935 10.441 -9.397 20.503 Atomic orbital electron populations 1.21835 0.98355 0.98748 1.00849 1.22008 0.92648 0.99466 1.03176 1.20621 0.94787 0.88665 0.78747 0.93521 1.21102 0.89817 1.38577 1.06112 0.91307 1.24867 0.99057 0.94873 0.95137 1.69906 1.35166 1.38086 1.09459 0.86270 0.84175 0.77827 0.78172 1.19482 1.20840 1.20787 1.86527 1.33716 1.62704 1.43908 1.19697 0.80759 0.76316 0.85977 1.90794 1.55468 1.59460 1.35002 1.19614 0.97163 1.13371 0.96394 1.24175 0.99457 0.94860 0.89860 1.77144 0.93886 1.19708 1.21207 1.48732 1.16199 1.40811 1.07779 1.21808 0.87169 0.90785 0.99909 1.22177 1.03316 0.94129 1.03170 1.19688 0.94366 0.94709 0.85542 1.17864 0.90811 1.02278 0.93091 1.21126 0.99416 0.94617 0.91148 1.21085 0.92819 1.00595 0.99221 1.21253 0.96637 0.97784 0.96737 1.20941 0.99047 1.00558 0.93944 1.21093 0.91779 0.99498 0.99663 0.94814 0.92875 0.95126 0.87491 0.94096 0.92558 0.78342 0.88282 0.88702 0.90356 0.91788 0.91386 0.85581 0.85549 0.85966 0.85849 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.56 37.16 0.32 -2.87 16 2 C -0.14 -3.42 5.49 -26.73 -0.15 -3.56 16 3 C 0.22 6.00 2.25 -27.88 -0.06 5.94 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.55 8.90 -34.44 -0.31 -14.85 16 6 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.16 11.29 55.43 0.63 -24.54 16 9 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 O -0.35 -8.53 9.65 -40.78 -0.39 -8.93 16 14 C 0.53 11.54 6.39 34.29 0.22 11.75 16 15 O -0.52 -11.89 11.22 -19.31 -0.22 -12.10 16 16 C -0.25 -4.60 6.15 -104.76 -0.64 -5.25 16 17 C 0.10 1.67 11.84 -17.04 -0.20 1.47 16 18 N -0.30 -4.57 12.48 30.83 0.38 -4.18 16 19 N -0.36 -4.79 3.61 -57.01 -0.21 -5.00 16 20 C 0.12 1.11 6.94 -4.04 -0.03 1.09 16 21 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 22 C 0.19 2.93 6.40 -82.06 -0.53 2.40 16 23 C -0.04 -0.55 4.84 -104.99 -0.51 -1.06 16 24 C -0.04 -0.65 7.84 -39.17 -0.31 -0.95 16 25 C -0.12 -1.48 10.03 -39.64 -0.40 -1.87 16 26 C -0.11 -1.13 10.04 -39.49 -0.40 -1.52 16 27 C -0.13 -1.32 10.03 -39.64 -0.40 -1.71 16 28 C -0.10 -1.20 8.49 -39.17 -0.33 -1.53 16 29 H 0.03 0.75 6.06 -51.93 -0.31 0.44 16 30 H 0.05 1.25 7.79 -51.93 -0.40 0.85 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.20 2.87 8.06 -52.49 -0.42 2.45 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.71 6.07 -51.93 -0.32 0.39 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.13 2.00 7.81 -52.49 -0.41 1.59 16 42 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.20 7.51 -52.49 -0.39 0.80 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -32.13 374.37 -8.91 -41.03 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.29 Total: 3.83 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.43 Total: -11.88 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.81 Total: -33.72 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.61 Total: -21.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.13 -8.91 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755851513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.137 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds