Wall clock time and date at job start Tue Mar 31 2020 15:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.08991 * 109.47156 * 54.99809 * 3 2 1 5 5 C 1.50704 * 109.47127 * 174.99898 * 3 2 1 6 6 H 1.08007 * 119.99897 * 119.99632 * 5 3 2 7 7 C 1.37872 * 120.00029 * 300.00063 * 5 3 2 8 8 N 1.31510 * 119.99960 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00077 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46958 * 119.99669 * 9 7 5 12 12 H 1.48494 * 109.47020 * 239.99661 * 9 7 5 13 13 O 1.45197 * 109.46795 * 294.99672 * 3 2 1 14 14 C 1.34806 * 116.99969 * 90.00481 * 13 3 2 15 15 O 1.21556 * 119.99719 * 359.97438 * 14 13 3 16 16 C 1.47013 * 119.99758 * 179.97438 * 14 13 3 17 17 C 1.41147 * 126.49731 * 359.68341 * 16 14 13 18 18 N 1.30449 * 108.29334 * 179.88054 * 17 16 14 19 19 N 1.39906 * 109.23692 * 0.38273 * 18 17 16 20 20 C 1.46499 * 125.79151 * 179.77162 * 19 18 17 21 21 C 1.53002 * 109.47454 * 269.68620 * 20 19 18 22 22 C 1.35146 * 108.41155 * 359.75535 * 19 18 17 23 23 C 1.47726 * 126.47717 * 179.97438 * 22 19 18 24 24 C 1.39628 * 120.14674 * 235.56818 * 23 22 19 25 25 C 1.37944 * 119.84338 * 179.79236 * 24 23 22 26 26 C 1.38372 * 120.15043 * 0.46033 * 25 24 23 27 27 C 1.38357 * 120.30319 * 359.78942 * 26 25 24 28 28 C 1.37945 * 120.14968 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47319 * 60.00533 * 1 2 3 30 30 H 1.08998 * 109.47275 * 299.99826 * 1 2 3 31 31 H 1.09002 * 109.46763 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47280 * 119.99377 * 2 1 3 33 33 H 1.09001 * 109.47705 * 239.99564 * 2 1 3 34 34 H 0.97001 * 119.99850 * 180.02562 * 8 7 5 35 35 H 1.07997 * 125.85104 * 0.03802 * 17 16 14 36 36 H 1.09001 * 109.47459 * 29.68301 * 20 19 18 37 37 H 1.09001 * 109.47231 * 149.68563 * 20 19 18 38 38 H 1.09004 * 109.47292 * 178.43352 * 21 20 19 39 39 H 1.08998 * 109.47051 * 298.43161 * 21 20 19 40 40 H 1.08997 * 109.46995 * 58.42693 * 21 20 19 41 41 H 1.07991 * 120.07331 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.92563 * 180.22856 * 25 24 23 43 43 H 1.08000 * 119.84504 * 179.76644 * 26 25 24 44 44 H 1.08000 * 119.92770 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.07813 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1733 9 14 6.0049 0.8815 1.3819 10 1 6.5987 1.5465 0.1943 11 1 6.3989 1.6170 2.6103 12 1 6.4971 -0.5172 1.4631 13 8 1.6558 2.0916 -1.2407 14 6 0.4676 2.7281 -1.2561 15 8 -0.2286 2.7397 -0.2597 16 6 0.0137 3.4080 -2.4780 17 6 0.7100 3.4860 -3.7033 18 7 -0.0169 4.1685 -4.5445 19 7 -1.1994 4.5687 -3.9130 20 6 -2.2722 5.3576 -4.5236 21 6 -2.0055 6.8463 -4.2926 22 6 -1.1841 4.1037 -2.6441 23 6 -2.2366 4.2961 -1.6255 24 6 -1.9216 4.8676 -0.3911 25 6 -2.9101 5.0484 0.5539 26 6 -4.2094 4.6560 0.2844 27 6 -4.5273 4.0843 -0.9348 28 6 -3.5495 3.9021 -1.8907 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.8292 -0.0602 2.9502 35 1 1.6774 3.0526 -3.9098 36 1 -2.3067 5.1566 -5.5944 37 1 -3.2260 5.0850 -4.0718 38 1 -2.7889 7.4343 -4.7708 39 1 -1.9987 7.0524 -3.2223 40 1 -1.0389 7.1129 -4.7200 41 1 -0.9073 5.1709 -0.1782 42 1 -2.6687 5.4937 1.5078 43 1 -4.9787 4.7964 1.0292 44 1 -5.5433 3.7798 -1.1386 45 1 -3.7991 3.4561 -2.8421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755851513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:48 Heat of formation + Delta-G solvation = -9.441298 kcal Electronic energy + Delta-G solvation = -28318.379255 eV Core-core repulsion = 24494.709557 eV Total energy + Delta-G solvation = -3823.669698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.60482 -40.81094 -39.77638 -37.41020 -35.68563 -35.35377 -33.42334 -33.27741 -31.89840 -30.86246 -30.15084 -29.18242 -25.94620 -24.97042 -24.24357 -23.58802 -23.35959 -22.16377 -21.23977 -20.62679 -19.13681 -18.46958 -18.06489 -17.26530 -17.06734 -16.95274 -16.33382 -16.30803 -15.83480 -15.64834 -15.32304 -14.96649 -14.78929 -14.69411 -14.36000 -14.12465 -13.92086 -13.68433 -13.48539 -13.32148 -13.29495 -13.04423 -12.99694 -12.78677 -12.54430 -12.42816 -12.37639 -12.11623 -12.08604 -11.91955 -11.71722 -11.37529 -11.12195 -10.75930 -10.74119 -10.49056 -9.99798 -9.86470 -9.50525 -8.24439 -6.40372 -0.20019 0.46067 0.59999 0.99232 1.23394 1.42858 1.43163 1.57186 2.16959 2.27279 2.47782 2.79691 3.05118 3.23985 3.45835 3.89360 3.96168 3.99961 4.03201 4.06337 4.22146 4.27471 4.28581 4.39818 4.43109 4.49253 4.51604 4.62044 4.70003 4.72869 4.79049 4.89904 4.92824 5.07919 5.11740 5.13935 5.26550 5.27762 5.42759 5.43983 5.47939 5.55619 5.56570 5.71555 5.76660 6.00643 6.02736 6.19626 6.38440 6.65659 7.13818 7.33280 8.82631 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.003710 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.100244 B = 7544.848967 C = 8585.920710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.128 4.128 3 C 0.230 3.770 4 H 0.007 0.993 5 C -0.548 4.548 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.271 1.271 13 O -0.362 6.362 14 C 0.525 3.475 15 O -0.535 6.535 16 C -0.294 4.294 17 C 0.100 3.900 18 N -0.303 5.303 19 N -0.342 5.342 20 C 0.111 3.889 21 C -0.164 4.164 22 C 0.204 3.796 23 C -0.061 4.061 24 C -0.070 4.070 25 C -0.131 4.131 26 C -0.100 4.100 27 C -0.119 4.119 28 C -0.101 4.101 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.270 0.730 35 H 0.208 0.792 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 10.969 -10.860 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.025 0.975 5 C -0.585 4.585 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.196 1.196 13 O -0.279 6.279 14 C 0.371 3.629 15 O -0.427 6.427 16 C -0.307 4.307 17 C -0.086 4.086 18 N -0.122 5.122 19 N -0.121 5.121 20 C -0.007 4.007 21 C -0.222 4.222 22 C 0.070 3.930 23 C -0.063 4.063 24 C -0.089 4.089 25 C -0.149 4.149 26 C -0.118 4.118 27 C -0.137 4.137 28 C -0.120 4.120 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.179 0.821 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.148 11.417 -11.710 24.430 hybrid contribution 1.528 -0.608 1.425 2.176 sum -16.620 10.809 -10.285 22.335 Atomic orbital electron populations 1.21656 0.96366 1.00217 0.99958 1.21852 0.94360 0.98256 1.02132 1.20309 0.94325 0.89098 0.78583 0.97478 1.21367 0.90604 1.39724 1.06821 0.91794 1.25757 1.04031 0.93926 0.94367 1.70021 1.37233 1.38086 1.09830 0.85200 0.77978 0.78306 0.78314 1.18935 1.20149 1.19644 1.86507 1.35425 1.63420 1.42501 1.20247 0.79697 0.75838 0.87135 1.90766 1.55678 1.60207 1.36042 1.19505 0.99425 1.16029 0.95724 1.24295 0.99958 0.95060 0.89276 1.77102 0.94476 1.19505 1.21130 1.49162 1.16223 1.39658 1.07054 1.22342 0.86532 0.90784 1.01067 1.22155 1.03832 0.93726 1.02497 1.19869 0.93651 0.92990 0.86456 1.17957 0.91729 1.03923 0.92674 1.21035 0.98772 0.96619 0.92519 1.21298 0.93481 1.00962 0.99157 1.21660 0.96258 0.96212 0.97673 1.21399 1.00348 0.98893 0.93032 1.21364 0.90703 0.98860 1.01042 0.94886 0.94486 0.92309 0.89519 0.93856 0.92107 0.77544 0.86207 0.86532 0.86985 0.93165 0.92745 0.88622 0.84669 0.82765 0.82134 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.56 71.98 0.62 -5.15 16 2 C -0.13 -6.70 5.49 30.59 0.17 -6.53 16 3 C 0.23 12.98 2.25 29.85 0.07 13.05 16 4 H 0.01 0.47 7.16 -2.39 -0.02 0.45 16 5 C -0.55 -31.93 8.90 25.60 0.23 -31.70 16 6 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -53.05 11.29 21.44 0.24 -52.81 16 9 Si 0.98 43.79 29.54 68.60 2.03 45.82 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 O -0.36 -18.54 9.65 -57.17 -0.55 -19.09 16 14 C 0.52 24.27 6.39 70.12 0.45 24.72 16 15 O -0.54 -26.19 11.22 19.65 0.22 -25.97 16 16 C -0.29 -11.16 6.15 -19.96 -0.12 -11.28 16 17 C 0.10 3.34 11.84 85.61 1.01 4.35 16 18 N -0.30 -9.10 12.48 -56.37 -0.70 -9.80 16 19 N -0.34 -8.91 3.61 -334.28 -1.21 -10.12 16 20 C 0.11 1.72 6.94 86.38 0.60 2.32 16 21 C -0.16 -2.27 10.24 71.98 0.74 -1.54 16 22 C 0.20 6.40 6.40 41.45 0.27 6.67 16 23 C -0.06 -1.73 4.84 -20.10 -0.10 -1.83 16 24 C -0.07 -2.14 7.84 22.54 0.18 -1.97 16 25 C -0.13 -3.21 10.03 22.23 0.22 -2.99 16 26 C -0.10 -1.86 10.04 22.33 0.22 -1.64 16 27 C -0.12 -2.04 10.03 22.23 0.22 -1.81 16 28 C -0.10 -2.14 8.49 22.53 0.19 -1.95 16 29 H 0.03 1.50 6.06 -2.39 -0.01 1.49 16 30 H 0.04 1.79 7.79 -2.39 -0.02 1.78 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.09 4.90 5.95 -2.38 -0.01 4.89 16 33 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.21 6.23 8.06 -2.91 -0.02 6.21 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.12 1.34 6.07 -2.39 -0.01 1.32 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 3.39 7.81 -2.92 -0.02 3.37 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 45 H 0.14 2.31 7.51 -2.91 -0.02 2.29 16 Total: -1.00 -73.26 374.37 6.43 -66.83 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.99 Total: 20.90 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 5.41 Total: -15.77 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.67 Total: -72.72 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.33 Total: -45.05 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -73.26 6.43 -66.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755851513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.392 kcal (2) G-P(sol) polarization free energy of solvation -73.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds