Wall clock time and date at job start Tue Mar 31 2020 15:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 H 1.08999 * 109.46941 * 304.99861 * 3 2 1 5 5 C 1.50697 * 109.47091 * 184.99679 * 3 2 1 6 6 H 1.08003 * 120.00193 * 239.99754 * 5 3 2 7 7 C 1.37878 * 119.99849 * 59.72597 * 5 3 2 8 8 N 1.31507 * 120.00028 * 0.27558 * 7 5 3 9 9 Si 1.86803 * 120.00016 * 180.27407 * 7 5 3 10 10 H 1.48495 * 109.47190 * 89.99962 * 9 7 5 11 11 H 1.48493 * 109.47209 * 210.00211 * 9 7 5 12 12 H 1.48505 * 109.46913 * 330.00045 * 9 7 5 13 13 O 1.45200 * 109.47134 * 64.99949 * 3 2 1 14 14 C 1.34804 * 116.99771 * 269.99961 * 13 3 2 15 15 O 1.21562 * 120.00185 * 0.02562 * 14 13 3 16 16 C 1.47022 * 119.99860 * 179.97438 * 14 13 3 17 17 C 1.41144 * 126.49114 * 359.69517 * 16 14 13 18 18 N 1.30449 * 108.29106 * 179.87356 * 17 16 14 19 19 N 1.39907 * 109.23921 * 0.38379 * 18 17 16 20 20 C 1.46497 * 125.79573 * 179.77131 * 19 18 17 21 21 C 1.53003 * 109.47238 * 269.68885 * 20 19 18 22 22 C 1.35147 * 108.41034 * 359.75296 * 19 18 17 23 23 C 1.47722 * 126.48163 * 179.97438 * 22 19 18 24 24 C 1.39624 * 120.15021 * 235.57340 * 23 22 19 25 25 C 1.37943 * 119.84609 * 179.78692 * 24 23 22 26 26 C 1.38361 * 120.15328 * 0.46906 * 25 24 23 27 27 C 1.38370 * 120.30054 * 359.78003 * 26 25 24 28 28 C 1.37948 * 120.14794 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47001 * 60.00050 * 1 2 3 30 30 H 1.09003 * 109.47683 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47405 * 300.00153 * 1 2 3 32 32 H 1.08999 * 109.47405 * 239.99847 * 2 1 3 33 33 H 1.09001 * 109.47001 * 119.99950 * 2 1 3 34 34 H 0.97007 * 120.00377 * 179.97438 * 8 7 5 35 35 H 1.07998 * 125.85824 * 0.02562 * 17 16 14 36 36 H 1.09001 * 109.47343 * 29.69019 * 20 19 18 37 37 H 1.09002 * 109.47067 * 149.68853 * 20 19 18 38 38 H 1.08997 * 109.47121 * 298.42387 * 21 20 19 39 39 H 1.09001 * 109.46863 * 58.42782 * 21 20 19 40 40 H 1.09005 * 109.46961 * 178.42305 * 21 20 19 41 41 H 1.08002 * 120.07216 * 0.02562 * 24 23 22 42 42 H 1.08002 * 119.92450 * 180.22404 * 25 24 23 43 43 H 1.07995 * 119.85414 * 179.76728 * 26 25 24 44 44 H 1.07998 * 119.92733 * 179.97438 * 27 26 25 45 45 H 1.08006 * 120.07334 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1435 0.8734 -1.2252 8 7 3.4065 0.3321 -2.1702 9 14 6.0055 0.8688 -1.3749 10 1 6.5494 -0.3631 -0.7490 11 1 6.3868 0.9049 -2.8096 12 1 6.5605 2.0610 -0.6851 13 8 1.6558 2.0917 1.2407 14 6 0.4676 2.7282 1.2559 15 8 -0.2286 2.7398 0.2595 16 6 0.0132 3.4074 2.4781 17 6 0.7034 3.4741 3.7075 18 7 -0.0194 4.1642 4.5459 19 7 -1.2011 4.5658 3.9138 20 6 -2.2741 5.3545 4.5245 21 6 -3.2971 4.4143 5.1651 22 6 -1.1846 4.1031 2.6442 23 6 -2.2364 4.2966 1.6251 24 6 -2.8110 3.1928 0.9919 25 6 -3.7958 3.3807 0.0444 26 6 -4.2074 4.6596 -0.2861 27 6 -3.6385 5.7581 0.3337 28 6 -2.6564 5.5845 1.2867 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8297 -0.0693 -2.9454 35 1 1.6662 3.0319 3.9172 36 1 -1.8543 6.0094 5.2881 37 1 -2.7635 5.9565 3.7587 38 1 -3.7372 3.7786 4.3969 39 1 -2.8019 3.7929 5.9113 40 1 -4.0807 5.0017 5.6436 41 1 -2.4880 2.1942 1.2463 42 1 -4.2437 2.5276 -0.4436 43 1 -4.9761 4.8012 -1.0313 44 1 -3.9641 6.7537 0.0709 45 1 -2.2134 6.4428 1.7701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755851516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:53 Heat of formation + Delta-G solvation = -9.441370 kcal Electronic energy + Delta-G solvation = -28345.332851 eV Core-core repulsion = 24521.663150 eV Total energy + Delta-G solvation = -3823.669702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.60471 -40.80936 -39.77214 -37.40754 -35.68438 -35.35495 -33.41427 -33.28080 -31.89521 -30.85957 -30.14266 -29.18480 -25.94758 -24.96308 -24.22833 -23.58710 -23.38030 -22.15419 -21.23446 -20.62692 -19.13336 -18.48290 -18.04508 -17.30488 -17.01095 -16.95013 -16.38527 -16.30401 -15.81057 -15.63899 -15.34461 -14.91596 -14.79264 -14.68235 -14.36774 -14.13590 -13.94715 -13.67473 -13.44099 -13.32745 -13.28791 -13.07407 -12.98054 -12.78094 -12.53865 -12.43485 -12.36812 -12.12514 -12.06976 -11.91768 -11.71783 -11.37449 -11.11858 -10.76827 -10.73753 -10.48169 -9.99877 -9.86143 -9.50177 -8.24212 -6.40230 -0.19807 0.46470 0.60312 0.99391 1.23292 1.42814 1.44583 1.55771 2.16507 2.27840 2.47758 2.79883 3.05225 3.24239 3.45833 3.89473 3.96253 4.00122 4.03327 4.06751 4.22434 4.27606 4.28581 4.40382 4.43676 4.49325 4.52008 4.62654 4.70262 4.73130 4.79319 4.90430 4.92679 5.08242 5.12468 5.14148 5.27025 5.27887 5.43116 5.44554 5.48122 5.55391 5.56916 5.72030 5.76679 6.00925 6.03137 6.19809 6.38526 6.65436 7.13844 7.33303 8.82552 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.003692 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.796987 B = 7581.341217 C = 8604.981657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.128 4.128 3 C 0.230 3.770 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.979 3.021 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.267 1.267 13 O -0.362 6.362 14 C 0.525 3.475 15 O -0.535 6.535 16 C -0.294 4.294 17 C 0.100 3.900 18 N -0.303 5.303 19 N -0.342 5.342 20 C 0.111 3.889 21 C -0.164 4.164 22 C 0.204 3.796 23 C -0.062 4.062 24 C -0.068 4.068 25 C -0.130 4.130 26 C -0.101 4.101 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.270 0.730 35 H 0.208 0.792 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.154 0.846 44 H 0.160 0.840 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.710 11.072 10.752 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.802 3.198 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.192 1.192 13 O -0.279 6.279 14 C 0.371 3.629 15 O -0.427 6.427 16 C -0.307 4.307 17 C -0.086 4.086 18 N -0.122 5.122 19 N -0.121 5.121 20 C -0.008 4.008 21 C -0.221 4.221 22 C 0.070 3.930 23 C -0.064 4.064 24 C -0.087 4.087 25 C -0.148 4.148 26 C -0.119 4.119 27 C -0.138 4.138 28 C -0.122 4.122 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.155 0.845 43 H 0.172 0.828 44 H 0.177 0.823 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.035 11.524 11.596 24.342 hybrid contribution 1.366 -0.903 -1.285 2.081 sum -16.669 10.621 10.311 22.293 Atomic orbital electron populations 1.21665 0.96265 1.00264 1.00036 1.21851 0.94514 0.98159 1.02113 1.20303 0.94299 0.89123 0.78563 0.97565 1.21343 0.90650 1.39689 1.06988 0.91808 1.25758 1.04051 0.93926 0.94349 1.70011 1.37291 1.37913 1.09924 0.85247 0.77958 0.79044 0.77556 1.19221 1.20248 1.19193 1.86506 1.35467 1.63398 1.42479 1.20248 0.79733 0.75812 0.87120 1.90767 1.55781 1.60107 1.36034 1.19505 0.99543 1.16126 0.95510 1.24295 0.99980 0.95107 0.89202 1.77102 0.94621 1.19394 1.21114 1.49161 1.15954 1.40260 1.06726 1.22340 0.84900 0.93393 1.00124 1.22151 0.98862 1.00169 1.00967 1.19869 0.93402 0.93106 0.86580 1.17973 0.95738 0.95390 0.97319 1.21050 0.94817 0.97337 0.95539 1.21305 0.97269 0.99061 0.97193 1.21665 0.99567 0.91771 0.98876 1.21395 0.96070 1.00554 0.95785 1.21364 0.97380 0.94646 0.98764 0.94345 0.92284 0.94763 0.89528 0.93918 0.92101 0.77537 0.86277 0.86619 0.93078 0.92684 0.87025 0.88230 0.84480 0.82786 0.82267 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.56 71.98 0.62 -5.05 16 2 C -0.13 -6.68 5.48 30.59 0.17 -6.51 16 3 C 0.23 12.99 2.25 29.85 0.07 13.06 16 4 H 0.01 0.41 7.16 -2.39 -0.02 0.40 16 5 C -0.55 -32.08 8.90 25.60 0.23 -31.85 16 6 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -53.08 11.28 21.45 0.24 -52.84 16 9 Si 0.98 43.84 29.54 68.60 2.03 45.86 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 O -0.36 -18.52 9.65 -57.16 -0.55 -19.07 16 14 C 0.52 24.24 6.39 70.12 0.45 24.68 16 15 O -0.54 -26.13 11.22 19.63 0.22 -25.91 16 16 C -0.29 -11.15 6.15 -19.96 -0.12 -11.27 16 17 C 0.10 3.34 11.84 85.61 1.01 4.35 16 18 N -0.30 -9.11 12.48 -56.37 -0.70 -9.81 16 19 N -0.34 -8.92 3.61 -334.28 -1.21 -10.13 16 20 C 0.11 1.72 6.94 86.38 0.60 2.32 16 21 C -0.16 -2.22 10.24 71.98 0.74 -1.49 16 22 C 0.20 6.41 6.40 41.45 0.27 6.67 16 23 C -0.06 -1.77 4.84 -20.10 -0.10 -1.86 16 24 C -0.07 -2.04 7.84 22.53 0.18 -1.86 16 25 C -0.13 -3.13 10.03 22.23 0.22 -2.91 16 26 C -0.10 -1.88 10.04 22.33 0.22 -1.65 16 27 C -0.12 -2.11 10.03 22.23 0.22 -1.88 16 28 C -0.10 -2.23 8.49 22.53 0.19 -2.03 16 29 H 0.04 1.82 7.79 -2.39 -0.02 1.81 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 1.51 6.06 -2.39 -0.01 1.50 16 32 H 0.09 4.88 5.94 -2.39 -0.01 4.86 16 33 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 35 H 0.21 6.22 8.06 -2.91 -0.02 6.20 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.12 1.36 6.07 -2.39 -0.01 1.34 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.10 3.39 7.81 -2.91 -0.02 3.36 16 42 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.14 2.39 7.51 -2.91 -0.02 2.36 16 Total: -1.00 -73.19 374.34 6.43 -66.76 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.99 Total: 20.91 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 5.41 Total: -15.77 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.67 Total: -72.78 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -0.33 Total: -44.98 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -73.19 6.43 -66.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755851516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.315 kcal (2) G-P(sol) polarization free energy of solvation -73.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds