Wall clock time and date at job start Tue Mar 31 2020 14:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47164 * 2 1 4 4 C 1.53000 * 109.47220 * 120.00584 * 2 1 3 5 5 O 1.45198 * 109.46982 * 174.99953 * 4 2 1 6 6 C 1.34813 * 116.99856 * 179.97438 * 5 4 2 7 7 O 1.21557 * 119.99411 * 0.27536 * 6 5 4 8 8 C 1.47016 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.41142 * 126.49669 * 0.02655 * 8 6 5 10 10 N 1.30442 * 108.29657 * 179.97438 * 9 8 6 11 11 N 1.39907 * 109.23634 * 0.02562 * 10 9 8 12 12 C 1.46501 * 125.79307 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47292 * 89.97436 * 12 11 10 14 14 H 1.07997 * 119.99829 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99856 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00429 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47042 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47257 * 119.99837 * 17 15 13 20 20 H 1.48500 * 109.46764 * 239.99747 * 17 15 13 21 21 C 1.35152 * 108.41083 * 359.75955 * 11 10 9 22 22 C 1.47727 * 126.47851 * 180.23090 * 21 11 10 23 23 C 1.39621 * 120.14516 * 314.91952 * 22 21 11 24 24 C 1.37950 * 119.84105 * 179.72329 * 23 22 21 25 25 C 1.38363 * 120.15217 * 0.52797 * 24 23 22 26 26 C 1.38369 * 120.30099 * 359.77078 * 25 24 23 27 27 C 1.37945 * 120.15160 * 359.95066 * 26 25 24 28 28 H 1.09001 * 109.47541 * 299.99902 * 1 2 3 29 29 H 1.09005 * 109.47149 * 60.00004 * 1 2 3 30 30 H 1.09005 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47483 * 240.00572 * 2 1 3 32 32 H 1.08992 * 109.47673 * 300.00010 * 3 2 1 33 33 H 1.08997 * 109.47012 * 60.00125 * 3 2 1 34 34 H 1.09000 * 109.47284 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47422 * 54.99917 * 4 2 1 36 36 H 1.09006 * 109.46544 * 294.99634 * 4 2 1 37 37 H 1.08004 * 125.85287 * 359.94867 * 9 8 6 38 38 H 1.09000 * 109.46848 * 209.96952 * 12 11 10 39 39 H 1.08993 * 109.47383 * 329.97081 * 12 11 10 40 40 H 0.97002 * 120.00581 * 180.02562 * 16 15 13 41 41 H 1.07995 * 120.08109 * 359.97438 * 23 22 21 42 42 H 1.07997 * 119.92511 * 180.27590 * 24 23 22 43 43 H 1.07998 * 119.84905 * 179.74269 * 25 24 23 44 44 H 1.07995 * 119.92575 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.07646 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 8 3.4870 -0.8255 1.1909 6 6 4.0985 -1.4392 2.2239 7 8 3.4394 -1.8797 3.1454 8 6 5.5617 -1.5815 2.2325 9 6 6.4550 -1.1294 1.2376 10 7 7.6676 -1.4404 1.6041 11 7 7.6216 -2.1007 2.8367 12 6 8.7771 -2.6090 3.5801 13 6 9.2897 -1.5366 4.5067 14 1 8.8036 -0.5727 4.5382 15 6 10.3798 -1.7857 5.3132 16 7 10.9720 -2.9593 5.2744 17 14 11.0147 -0.4567 6.4621 18 1 10.1798 0.7628 6.3176 19 1 10.9464 -0.9405 7.8644 20 1 12.4230 -0.1357 6.1173 21 6 6.3307 -2.1847 3.2280 22 6 5.8287 -2.8014 4.4730 23 6 6.3162 -4.0426 4.8867 24 6 5.8472 -4.6100 6.0534 25 6 4.8880 -3.9572 6.8071 26 6 4.3961 -2.7298 6.3996 27 6 4.8604 -2.1483 5.2381 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9562 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6054 -1.7199 1.2950 36 1 1.7516 -0.1584 2.1369 37 1 6.1814 -0.6145 0.3285 38 1 8.4793 -3.4806 4.1629 39 1 9.5638 -2.8911 2.8805 40 1 11.7388 -3.1347 5.8421 41 1 7.0616 -4.5553 4.2970 42 1 6.2266 -5.5680 6.3770 43 1 4.5212 -4.4078 7.7175 44 1 3.6472 -2.2257 6.9923 45 1 4.4759 -1.1901 4.9213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759053131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:43 Heat of formation + Delta-G solvation = -2.842841 kcal Electronic energy + Delta-G solvation = -27761.488978 eV Core-core repulsion = 23938.105410 eV Total energy + Delta-G solvation = -3823.383568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.96304 -39.62928 -38.38909 -36.75201 -34.93358 -33.93080 -32.22948 -31.50034 -30.48358 -28.78751 -27.63461 -27.36983 -26.54769 -23.93651 -22.83573 -22.20599 -21.94214 -20.46011 -20.14823 -19.16003 -17.48240 -16.96089 -16.74405 -16.25309 -15.99078 -15.54477 -14.89893 -14.78868 -14.58278 -14.23880 -14.00416 -13.70909 -13.51704 -13.39166 -13.12358 -12.86617 -12.61342 -12.46572 -12.38471 -12.30824 -12.15479 -11.74162 -11.35629 -11.28077 -11.14377 -11.05775 -10.97523 -10.87249 -10.68473 -10.44322 -10.38223 -10.32611 -9.94733 -9.79726 -9.19698 -8.72004 -8.45985 -8.26319 -7.91436 -6.34629 -4.41551 1.24889 1.85759 2.14189 2.67241 2.82400 3.17075 3.24839 3.28373 3.36611 3.64742 4.23959 4.25919 4.58294 4.64912 4.82127 4.83220 5.00604 5.14631 5.26368 5.28536 5.29062 5.33029 5.37358 5.43945 5.46936 5.52929 5.64170 5.70392 5.71819 5.82961 5.84455 5.89122 6.04042 6.13361 6.15795 6.27727 6.41217 6.61552 6.71861 6.80560 6.84483 6.87593 6.92539 7.07681 7.32116 7.49038 7.67513 7.74558 8.17293 8.30283 8.62366 9.24903 10.73848 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.003628 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.830960 B = 7716.758101 C = 8893.787025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.074 3.926 5 O -0.355 6.355 6 C 0.546 3.454 7 O -0.520 6.520 8 C -0.303 4.303 9 C 0.081 3.919 10 N -0.291 5.291 11 N -0.301 5.301 12 C 0.244 3.756 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.889 5.889 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.280 1.280 21 C 0.205 3.795 22 C -0.035 4.035 23 C -0.084 4.084 24 C -0.127 4.127 25 C -0.109 4.109 26 C -0.132 4.132 27 C -0.043 4.043 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.187 0.813 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.269 0.731 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 1.758 -5.140 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.205 4.205 4 C 0.000 4.000 5 O -0.272 6.272 6 C 0.393 3.607 7 O -0.410 6.410 8 C -0.316 4.316 9 C -0.105 4.105 10 N -0.111 5.111 11 N -0.077 5.077 12 C 0.128 3.872 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.205 1.205 21 C 0.068 3.932 22 C -0.037 4.037 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.127 4.127 26 C -0.150 4.150 27 C -0.063 4.063 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.204 0.796 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.867 1.538 -5.094 16.735 hybrid contribution -0.423 0.616 0.860 1.139 sum -16.290 2.154 -4.234 16.969 Atomic orbital electron populations 1.21776 0.93999 1.02164 1.02351 1.21147 0.95640 0.97048 0.97611 1.21829 1.02228 0.94902 1.01541 1.23033 0.77370 1.00843 0.98786 1.86528 1.22794 1.72225 1.45666 1.19959 0.87530 0.74025 0.79169 1.90828 1.66635 1.47471 1.36112 1.18972 0.90278 1.21314 1.01080 1.23867 0.89259 0.98448 0.98950 1.77199 1.21249 1.15171 0.97450 1.49706 1.05929 1.38118 1.13912 1.20116 0.80240 0.95949 0.90924 1.21235 1.14780 0.99351 1.22199 0.91608 1.24884 0.95692 0.96110 0.96781 1.69908 1.21791 1.21538 1.39378 0.86282 0.78801 0.81432 0.80133 1.19496 1.20512 1.20529 1.19727 0.85245 0.95259 0.93001 1.17859 0.98473 0.94928 0.92422 1.21248 0.98041 0.94348 0.96593 1.20927 0.98071 1.00394 0.95128 1.21166 0.96987 0.95313 0.99274 1.20930 1.00937 0.96151 0.96948 1.21036 0.93272 0.99323 0.92627 0.92353 0.91838 0.92376 0.90036 0.92638 0.92787 0.91562 0.91524 0.91479 0.79579 0.91860 0.92200 0.92155 0.85775 0.85969 0.86386 0.86205 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.15 0.34 -0.67 16 2 C -0.10 -0.85 3.16 -90.63 -0.29 -1.14 16 3 C -0.15 -1.29 9.09 37.16 0.34 -0.95 16 4 C 0.07 0.85 4.85 37.16 0.18 1.03 16 5 O -0.35 -5.15 9.61 -40.80 -0.39 -5.55 16 6 C 0.55 9.48 7.83 34.29 0.27 9.75 16 7 O -0.52 -9.63 12.76 -19.31 -0.25 -9.88 16 8 C -0.30 -5.77 6.12 -104.77 -0.64 -6.41 16 9 C 0.08 1.47 11.84 -17.04 -0.20 1.27 16 10 N -0.29 -6.27 12.48 30.83 0.38 -5.89 16 11 N -0.30 -6.86 3.59 -58.18 -0.21 -7.07 16 12 C 0.24 6.06 5.95 -5.19 -0.03 6.03 16 13 C -0.54 -14.55 9.39 -34.44 -0.32 -14.87 16 14 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 17 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.21 4.30 6.51 -82.06 -0.53 3.77 16 22 C -0.03 -0.69 5.25 -104.99 -0.55 -1.24 16 23 C -0.08 -1.55 8.52 -39.17 -0.33 -1.89 16 24 C -0.13 -2.04 10.03 -39.64 -0.40 -2.44 16 25 C -0.11 -1.61 10.04 -39.49 -0.40 -2.01 16 26 C -0.13 -2.06 10.03 -39.64 -0.40 -2.46 16 27 C -0.04 -0.79 7.55 -39.17 -0.30 -1.09 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.19 2.62 8.06 -52.48 -0.42 2.19 16 38 H 0.06 1.55 5.08 -51.93 -0.26 1.29 16 39 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.12 2.30 6.54 -52.49 -0.34 1.96 16 42 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.12 2.25 6.78 -52.49 -0.36 1.89 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -29.97 381.23 -8.77 -38.75 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.41 Total: 3.18 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.36 Total: -11.55 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.91 Total: -36.65 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.64 Total: -15.42 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.97 -8.77 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759053131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.903 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds