Wall clock time and date at job start Tue Mar 31 2020 14:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47164 * 2 1 4 4 C 1.53000 * 109.47220 * 120.00584 * 2 1 3 5 5 O 1.45198 * 109.46982 * 174.99953 * 4 2 1 6 6 C 1.34813 * 116.99856 * 179.97438 * 5 4 2 7 7 O 1.21557 * 119.99411 * 0.27536 * 6 5 4 8 8 C 1.47016 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.41142 * 126.49669 * 0.02655 * 8 6 5 10 10 N 1.30442 * 108.29657 * 179.97438 * 9 8 6 11 11 N 1.39907 * 109.23634 * 0.02562 * 10 9 8 12 12 C 1.46501 * 125.79307 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47292 * 89.97436 * 12 11 10 14 14 H 1.07997 * 119.99829 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99856 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00429 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47042 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47257 * 119.99837 * 17 15 13 20 20 H 1.48500 * 109.46764 * 239.99747 * 17 15 13 21 21 C 1.35152 * 108.41083 * 359.75955 * 11 10 9 22 22 C 1.47727 * 126.47851 * 180.23090 * 21 11 10 23 23 C 1.39621 * 120.14516 * 314.91952 * 22 21 11 24 24 C 1.37950 * 119.84105 * 179.72329 * 23 22 21 25 25 C 1.38363 * 120.15217 * 0.52797 * 24 23 22 26 26 C 1.38369 * 120.30099 * 359.77078 * 25 24 23 27 27 C 1.37945 * 120.15160 * 359.95066 * 26 25 24 28 28 H 1.09001 * 109.47541 * 299.99902 * 1 2 3 29 29 H 1.09005 * 109.47149 * 60.00004 * 1 2 3 30 30 H 1.09005 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47483 * 240.00572 * 2 1 3 32 32 H 1.08992 * 109.47673 * 300.00010 * 3 2 1 33 33 H 1.08997 * 109.47012 * 60.00125 * 3 2 1 34 34 H 1.09000 * 109.47284 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47422 * 54.99917 * 4 2 1 36 36 H 1.09006 * 109.46544 * 294.99634 * 4 2 1 37 37 H 1.08004 * 125.85287 * 359.94867 * 9 8 6 38 38 H 1.09000 * 109.46848 * 209.96952 * 12 11 10 39 39 H 1.08993 * 109.47383 * 329.97081 * 12 11 10 40 40 H 0.97002 * 120.00581 * 180.02562 * 16 15 13 41 41 H 1.07995 * 120.08109 * 359.97438 * 23 22 21 42 42 H 1.07997 * 119.92511 * 180.27590 * 24 23 22 43 43 H 1.07998 * 119.84905 * 179.74269 * 25 24 23 44 44 H 1.07995 * 119.92575 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.07646 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 8 3.4870 -0.8255 1.1909 6 6 4.0985 -1.4392 2.2239 7 8 3.4394 -1.8797 3.1454 8 6 5.5617 -1.5815 2.2325 9 6 6.4550 -1.1294 1.2376 10 7 7.6676 -1.4404 1.6041 11 7 7.6216 -2.1007 2.8367 12 6 8.7771 -2.6090 3.5801 13 6 9.2897 -1.5366 4.5067 14 1 8.8036 -0.5727 4.5382 15 6 10.3798 -1.7857 5.3132 16 7 10.9720 -2.9593 5.2744 17 14 11.0147 -0.4567 6.4621 18 1 10.1798 0.7628 6.3176 19 1 10.9464 -0.9405 7.8644 20 1 12.4230 -0.1357 6.1173 21 6 6.3307 -2.1847 3.2280 22 6 5.8287 -2.8014 4.4730 23 6 6.3162 -4.0426 4.8867 24 6 5.8472 -4.6100 6.0534 25 6 4.8880 -3.9572 6.8071 26 6 4.3961 -2.7298 6.3996 27 6 4.8604 -2.1483 5.2381 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9562 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6054 -1.7199 1.2950 36 1 1.7516 -0.1584 2.1369 37 1 6.1814 -0.6145 0.3285 38 1 8.4793 -3.4806 4.1629 39 1 9.5638 -2.8911 2.8805 40 1 11.7388 -3.1347 5.8421 41 1 7.0616 -4.5553 4.2970 42 1 6.2266 -5.5680 6.3770 43 1 4.5212 -4.4078 7.7175 44 1 3.6472 -2.2257 6.9923 45 1 4.4759 -1.1901 4.9213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759053131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:42 Heat of formation + Delta-G solvation = -16.980798 kcal Electronic energy + Delta-G solvation = -27762.102045 eV Core-core repulsion = 23938.105410 eV Total energy + Delta-G solvation = -3823.996636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.49171 -40.93259 -39.71396 -37.85229 -35.92519 -35.80762 -33.91225 -33.06806 -31.80327 -30.21794 -29.39578 -27.99638 -27.65792 -25.66491 -24.35072 -23.60268 -23.28590 -21.63821 -21.24089 -20.61191 -19.07167 -18.70095 -18.17759 -17.44223 -17.24198 -16.98279 -16.61335 -16.21929 -15.70165 -15.56614 -15.32388 -15.04321 -14.86198 -14.58624 -14.41078 -14.22231 -14.05797 -13.65885 -13.63110 -13.50592 -13.34557 -13.05425 -12.93120 -12.76252 -12.46201 -12.35017 -12.10611 -12.03802 -11.95613 -11.92047 -11.83938 -11.62455 -11.38708 -11.25170 -10.78241 -10.73000 -9.89163 -9.78938 -9.35563 -8.39696 -6.54866 -0.17705 0.53460 0.73767 1.14192 1.34069 1.35745 1.40858 1.49584 1.90839 2.21406 2.30651 2.92122 2.92995 3.38099 3.64857 3.80720 3.89442 3.93953 3.99787 4.06688 4.18995 4.23586 4.26408 4.39471 4.52690 4.56220 4.64225 4.69147 4.75508 4.79908 4.85300 4.88351 4.96559 5.02661 5.04698 5.13037 5.22641 5.34000 5.43064 5.45247 5.49474 5.51167 5.55541 5.55905 5.59044 5.71660 5.88477 6.06585 6.50460 6.65645 6.90880 7.15177 8.68805 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.003628 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.830960 B = 7716.758101 C = 8893.787025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.148 4.148 4 C 0.068 3.932 5 O -0.350 6.350 6 C 0.552 3.448 7 O -0.532 6.532 8 C -0.309 4.309 9 C 0.098 3.902 10 N -0.327 5.327 11 N -0.326 5.326 12 C 0.261 3.739 13 C -0.554 4.554 14 H 0.048 0.952 15 C 0.028 3.972 16 N -0.913 5.913 17 Si 0.968 3.032 18 H -0.275 1.275 19 H -0.267 1.267 20 H -0.271 1.271 21 C 0.195 3.805 22 C -0.065 4.065 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.099 4.099 26 C -0.130 4.130 27 C -0.058 4.058 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.228 0.772 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.275 0.725 41 H 0.110 0.890 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.298 2.380 -4.248 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.006 4.006 5 O -0.266 6.266 6 C 0.399 3.601 7 O -0.424 6.424 8 C -0.323 4.323 9 C -0.088 4.088 10 N -0.147 5.147 11 N -0.101 5.101 12 C 0.143 3.857 13 C -0.592 4.592 14 H 0.066 0.934 15 C -0.174 4.174 16 N -0.551 5.551 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.192 1.192 20 H -0.196 1.196 21 C 0.059 3.941 22 C -0.067 4.067 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.117 4.117 26 C -0.148 4.148 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.244 0.756 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.165 0.835 43 H 0.178 0.822 44 H 0.170 0.830 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.939 2.159 -4.221 18.555 hybrid contribution 0.063 0.412 0.542 0.683 sum -17.876 2.570 -3.679 18.431 Atomic orbital electron populations 1.21769 0.92216 1.02724 1.03232 1.21180 0.96943 0.96709 0.96101 1.21836 1.01266 0.94978 1.02439 1.23376 0.75397 1.01393 1.00423 1.86516 1.24685 1.71259 1.44189 1.19671 0.86859 0.74043 0.79564 1.90811 1.66748 1.48028 1.36765 1.19243 0.91520 1.20820 1.00688 1.24505 0.87925 0.96775 0.99549 1.77133 1.23224 1.16659 0.97649 1.49436 1.06004 1.39952 1.14746 1.19643 0.80504 0.95477 0.90063 1.21341 1.15408 0.99133 1.23335 0.93405 1.25653 0.95599 0.98160 0.97962 1.69982 1.22153 1.22919 1.40024 0.85353 0.78291 0.78593 0.78578 1.19919 1.19238 1.19590 1.20211 0.84772 0.95114 0.93992 1.18072 0.99915 0.95867 0.92834 1.21319 0.98643 0.94548 0.97984 1.21300 0.98030 1.01364 0.94066 1.21639 0.95476 0.94565 0.99996 1.21348 1.00932 0.96484 0.95990 1.21123 0.93486 0.99357 0.93788 0.92098 0.90349 0.92020 0.89804 0.90966 0.92726 0.93057 0.91451 0.91502 0.75567 0.92134 0.94734 0.91602 0.87173 0.83481 0.82207 0.83016 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 71.98 0.66 -0.97 16 2 C -0.09 -1.44 3.16 -10.80 -0.03 -1.47 16 3 C -0.15 -2.31 9.09 71.98 0.65 -1.66 16 4 C 0.07 1.48 4.85 71.98 0.35 1.83 16 5 O -0.35 -9.85 9.61 -57.25 -0.55 -10.40 16 6 C 0.55 19.10 7.83 70.12 0.55 19.65 16 7 O -0.53 -19.66 12.76 19.65 0.25 -19.41 16 8 C -0.31 -12.00 6.12 -19.96 -0.12 -12.12 16 9 C 0.10 3.60 11.84 85.61 1.01 4.61 16 10 N -0.33 -14.64 12.48 -56.37 -0.70 -15.34 16 11 N -0.33 -15.63 3.59 -337.99 -1.21 -16.84 16 12 C 0.26 13.74 5.95 85.63 0.51 14.25 16 13 C -0.55 -31.19 9.39 25.60 0.24 -30.95 16 14 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 15 C 0.03 1.52 5.46 84.65 0.46 1.99 16 16 N -0.91 -51.06 13.29 21.44 0.28 -50.78 16 17 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.20 8.54 6.51 41.45 0.27 8.81 16 22 C -0.07 -2.66 5.25 -20.10 -0.11 -2.76 16 23 C -0.11 -4.06 8.52 22.54 0.19 -3.87 16 24 C -0.13 -4.01 10.03 22.23 0.22 -3.79 16 25 C -0.10 -2.64 10.04 22.33 0.22 -2.42 16 26 C -0.13 -3.80 10.03 22.23 0.22 -3.57 16 27 C -0.06 -2.13 7.55 22.53 0.17 -1.96 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.95 7.82 -2.39 -0.02 0.93 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.23 6.04 8.06 -2.91 -0.02 6.02 16 38 H 0.06 3.17 5.08 -2.39 -0.01 3.16 16 39 H 0.03 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.11 4.38 6.54 -2.91 -0.02 4.36 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 45 H 0.12 4.28 6.78 -2.91 -0.02 4.26 16 Total: -1.00 -66.92 381.23 6.56 -60.35 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.99 Total: 21.57 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 5.48 Total: -14.41 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.63 Total: -82.96 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.30 Total: -29.81 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -66.92 6.56 -60.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759053131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.371 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds