Wall clock time and date at job start Tue Mar 31 2020 15:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 H 1.09000 * 109.46701 * 305.00080 * 3 2 1 5 5 C 1.52996 * 109.46790 * 184.99996 * 3 2 1 6 6 O 1.45203 * 109.47027 * 64.99961 * 3 2 1 7 7 C 1.34798 * 116.99617 * 209.99804 * 6 3 2 8 8 O 1.21562 * 120.00412 * 0.02562 * 7 6 3 9 9 C 1.47020 * 119.99894 * 180.02562 * 7 6 3 10 10 C 1.41148 * 126.48938 * 359.97438 * 9 7 6 11 11 N 1.30446 * 108.28989 * 180.02562 * 10 9 7 12 12 N 1.39907 * 109.24456 * 359.97438 * 11 10 9 13 13 C 1.46491 * 125.80058 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46957 * 90.02394 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.35156 * 108.40448 * 0.26482 * 12 11 10 23 23 C 1.47725 * 126.47827 * 179.71462 * 22 12 11 24 24 C 1.39625 * 120.14357 * 314.72316 * 23 22 12 25 25 C 1.37950 * 119.84169 * 179.77113 * 24 23 22 26 26 C 1.38366 * 120.15108 * 0.50239 * 25 24 23 27 27 C 1.38367 * 120.30211 * 359.75237 * 26 25 24 28 28 C 1.37945 * 120.14981 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47278 * 300.00136 * 1 2 3 30 30 H 1.09003 * 109.47099 * 60.00118 * 1 2 3 31 31 H 1.08998 * 109.47530 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46929 * 239.99613 * 2 1 3 33 33 H 1.09003 * 109.47099 * 119.99882 * 2 1 3 34 34 H 1.08998 * 109.47181 * 60.00098 * 5 3 2 35 35 H 1.08998 * 109.47118 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47568 * 299.99553 * 5 3 2 37 37 H 1.07997 * 125.85775 * 0.03322 * 10 9 7 38 38 H 1.09004 * 109.47166 * 330.02660 * 13 12 11 39 39 H 1.08994 * 109.47507 * 210.02367 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.07991 * 120.08060 * 0.02562 * 24 23 22 42 42 H 1.07997 * 119.92360 * 180.25428 * 25 24 23 43 43 H 1.08001 * 119.84943 * 179.72132 * 26 25 24 44 44 H 1.07994 * 119.92523 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.08098 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 8 1.6559 2.0917 1.2407 7 6 1.4460 3.4224 1.1956 8 8 1.5799 4.0237 0.1476 9 6 1.0550 4.1467 2.4138 10 6 0.8612 3.5893 3.6960 11 7 0.5206 4.5483 4.5120 12 7 0.4778 5.7577 3.8100 13 6 0.1362 7.0652 4.3756 14 6 1.3884 7.7394 4.8743 15 1 2.3432 7.2437 4.7791 16 6 1.3158 8.9918 5.4465 17 7 0.1532 9.5955 5.5621 18 14 2.8689 9.8307 6.0577 19 1 3.8141 10.0076 4.9260 20 1 2.5232 11.1581 6.6267 21 1 3.5040 8.9932 7.1068 22 6 0.8000 5.5141 2.5202 23 6 0.8712 6.5083 1.4299 24 6 -0.1438 7.4548 1.2767 25 6 -0.0687 8.3833 0.2593 26 6 1.0041 8.3716 -0.6145 27 6 2.0107 7.4331 -0.4716 28 6 1.9510 6.5024 0.5448 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8532 0.9569 -1.0571 35 1 3.9282 2.4719 -0.1262 36 1 3.9995 0.9052 0.7161 37 1 0.9754 2.5475 3.9567 38 1 -0.5594 6.9321 5.2042 39 1 -0.3279 7.6834 3.6073 40 1 0.1022 10.4765 5.9651 41 1 -0.9837 7.4625 1.9556 42 1 -0.8510 9.1185 0.1420 43 1 1.0557 9.0979 -1.4121 44 1 2.8454 7.4297 -1.1568 45 1 2.7375 5.7706 0.6557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759068070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:14 Heat of formation + Delta-G solvation = -15.589647 kcal Electronic energy + Delta-G solvation = -28109.519065 eV Core-core repulsion = 24285.582754 eV Total energy + Delta-G solvation = -3823.936311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49003 -41.01545 -39.71497 -37.77877 -35.85677 -34.93504 -33.88882 -33.05056 -31.80414 -30.95296 -30.02462 -29.31527 -26.07329 -24.95060 -24.30204 -23.61406 -23.39893 -22.06811 -21.34566 -20.66384 -19.12981 -18.76690 -18.12976 -17.33754 -17.00468 -16.84346 -16.61508 -16.11503 -15.59638 -15.42810 -15.23446 -15.01900 -14.82600 -14.68517 -14.54352 -14.20887 -14.12296 -13.93634 -13.64577 -13.54269 -13.27564 -13.05656 -12.75484 -12.64720 -12.57118 -12.43718 -12.31642 -12.03998 -12.00264 -11.90868 -11.86402 -11.60071 -11.34745 -11.17979 -10.77790 -10.72990 -9.88818 -9.78970 -9.35279 -8.39394 -6.54734 -0.17227 0.53369 0.74752 1.14921 1.35524 1.36725 1.41555 1.47751 1.93688 2.23184 2.30782 2.92052 2.93177 3.38319 3.66824 3.77183 3.91142 3.98866 3.99890 4.06880 4.16318 4.23399 4.26341 4.38189 4.51047 4.56028 4.66145 4.70599 4.71608 4.79516 4.86422 4.88737 4.96200 5.01029 5.09262 5.12842 5.19065 5.23441 5.40796 5.42702 5.49530 5.53106 5.55554 5.57034 5.61722 5.71770 5.88953 6.06454 6.50034 6.66148 6.94817 7.15075 8.68733 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003890 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.426115 B = 7196.047423 C = 8168.829222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C 0.077 3.923 4 H 0.071 0.929 5 C -0.166 4.166 6 O -0.347 6.347 7 C 0.552 3.448 8 O -0.531 6.531 9 C -0.309 4.309 10 C 0.097 3.903 11 N -0.327 5.327 12 N -0.326 5.326 13 C 0.262 3.738 14 C -0.556 4.556 15 H 0.048 0.952 16 C 0.029 3.971 17 N -0.913 5.913 18 Si 0.967 3.033 19 H -0.269 1.269 20 H -0.270 1.270 21 H -0.272 1.272 22 C 0.194 3.806 23 C -0.066 4.066 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.099 4.099 27 C -0.130 4.130 28 C -0.057 4.057 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.227 0.773 38 H 0.034 0.966 39 H 0.061 0.939 40 H 0.275 0.725 41 H 0.110 0.890 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 -12.755 -14.780 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C 0.023 3.977 4 H 0.090 0.910 5 C -0.223 4.223 6 O -0.264 6.264 7 C 0.399 3.601 8 O -0.422 6.422 9 C -0.322 4.322 10 C -0.089 4.089 11 N -0.147 5.147 12 N -0.101 5.101 13 C 0.144 3.856 14 C -0.594 4.594 15 H 0.066 0.934 16 C -0.173 4.173 17 N -0.550 5.550 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.194 1.194 21 H -0.197 1.197 22 C 0.058 3.942 23 C -0.068 4.068 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.117 4.117 27 C -0.148 4.148 28 C -0.076 4.076 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.243 0.757 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.165 0.835 43 H 0.178 0.822 44 H 0.169 0.831 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.709 -12.033 -13.682 18.421 hybrid contribution 0.592 0.393 0.055 0.712 sum 3.301 -11.640 -13.627 18.223 Atomic orbital electron populations 1.21787 0.95684 1.02545 1.01377 1.21690 0.96347 0.92253 1.04654 1.23068 0.96266 0.94188 0.84205 0.91043 1.22192 0.93580 1.02265 1.04254 1.86585 1.79550 1.20879 1.39344 1.19653 0.72760 0.80981 0.86743 1.90796 1.50747 1.68479 1.32215 1.19276 1.26496 0.91491 0.94973 1.24496 0.95126 1.00224 0.89009 1.77131 1.25469 0.90155 1.21904 1.49426 1.47248 1.08618 1.04832 1.19628 0.97092 0.73926 0.94994 1.21288 0.92940 1.02848 1.42342 0.93374 1.25653 0.99988 0.96875 0.94803 1.69974 1.25550 1.15854 1.43667 0.85471 0.78852 0.77835 0.78798 1.19405 1.19405 1.19728 1.20217 0.94446 0.93610 0.85935 1.18081 0.97971 0.95927 0.94785 1.21314 0.97778 0.94879 0.98525 1.21298 1.00098 0.98495 0.94876 1.21639 0.92844 0.98225 0.98964 1.21346 1.00365 0.95055 0.98037 1.21123 0.95904 0.97099 0.93497 0.93838 0.93250 0.90702 0.87513 0.90039 0.88453 0.93917 0.90914 0.75656 0.94785 0.92169 0.91587 0.87209 0.83469 0.82213 0.83056 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.81 71.98 0.71 -1.92 16 2 C -0.11 -1.70 5.65 30.60 0.17 -1.53 16 3 C 0.08 1.66 2.56 30.59 0.08 1.74 16 4 H 0.07 1.73 7.16 -2.39 -0.02 1.72 16 5 C -0.17 -3.04 9.55 71.98 0.69 -2.35 16 6 O -0.35 -9.76 9.27 -57.10 -0.53 -10.29 16 7 C 0.55 19.12 7.81 70.12 0.55 19.67 16 8 O -0.53 -19.54 12.19 19.63 0.24 -19.30 16 9 C -0.31 -12.04 6.12 -19.96 -0.12 -12.17 16 10 C 0.10 3.58 11.84 85.61 1.01 4.60 16 11 N -0.33 -14.70 12.48 -56.37 -0.70 -15.40 16 12 N -0.33 -15.67 3.59 -338.00 -1.21 -16.89 16 13 C 0.26 13.82 5.96 85.64 0.51 14.33 16 14 C -0.56 -31.38 9.39 25.60 0.24 -31.14 16 15 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 16 C 0.03 1.56 5.46 84.66 0.46 2.03 16 17 N -0.91 -51.20 13.29 21.45 0.28 -50.92 16 18 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 C 0.19 8.51 6.51 41.45 0.27 8.78 16 23 C -0.07 -2.70 5.26 -20.10 -0.11 -2.80 16 24 C -0.11 -4.08 8.50 22.54 0.19 -3.88 16 25 C -0.13 -4.02 10.03 22.23 0.22 -3.80 16 26 C -0.10 -2.65 10.04 22.33 0.22 -2.43 16 27 C -0.13 -3.83 10.03 22.23 0.22 -3.61 16 28 C -0.06 -2.09 7.54 22.53 0.17 -1.92 16 29 H 0.04 0.90 7.82 -2.39 -0.02 0.88 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.23 6.10 8.06 -2.91 -0.02 6.08 16 38 H 0.03 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.06 3.17 5.08 -2.39 -0.01 3.16 16 40 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 41 H 0.11 4.38 6.56 -2.92 -0.02 4.36 16 42 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 43 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 44 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 45 H 0.12 4.32 6.75 -2.91 -0.02 4.30 16 Total: -1.00 -67.44 380.61 6.59 -60.85 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.99 Total: 23.09 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 5.49 Total: -16.41 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.63 Total: -83.20 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.29 Total: -29.58 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.44 6.59 -60.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759068070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.260 kcal (2) G-P(sol) polarization free energy of solvation -67.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds