Wall clock time and date at job start Tue Mar 31 2020 14:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47130 * 180.02562 * 3 2 1 5 5 O 1.45198 * 109.46982 * 179.97438 * 4 3 2 6 6 C 1.34813 * 116.99856 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99411 * 0.27536 * 6 5 4 8 8 C 1.47016 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.41142 * 126.49669 * 0.02655 * 8 6 5 10 10 N 1.30442 * 108.29657 * 179.97438 * 9 8 6 11 11 N 1.39907 * 109.23634 * 0.02562 * 10 9 8 12 12 C 1.46501 * 125.79307 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47292 * 89.97436 * 12 11 10 14 14 H 1.07997 * 119.99829 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99856 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00429 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47042 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47257 * 119.99837 * 17 15 13 20 20 H 1.48500 * 109.46764 * 239.99747 * 17 15 13 21 21 C 1.35152 * 108.41083 * 359.75955 * 11 10 9 22 22 C 1.47727 * 126.47851 * 180.23090 * 21 11 10 23 23 C 1.39621 * 120.14516 * 314.91952 * 22 21 11 24 24 C 1.37950 * 119.84105 * 179.72329 * 23 22 21 25 25 C 1.38363 * 120.15217 * 0.52797 * 24 23 22 26 26 C 1.38369 * 120.30099 * 359.77078 * 25 24 23 27 27 C 1.37945 * 120.15160 * 359.95066 * 26 25 24 28 28 H 1.09003 * 109.47442 * 59.99919 * 1 2 3 29 29 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.47087 * 300.00449 * 1 2 3 31 31 H 1.08997 * 109.46822 * 239.99456 * 2 1 3 32 32 H 1.08998 * 109.47020 * 119.99888 * 2 1 3 33 33 H 1.08997 * 109.47714 * 60.00002 * 3 2 1 34 34 H 1.09006 * 109.46930 * 299.99577 * 3 2 1 35 35 H 1.08994 * 109.47422 * 59.99698 * 4 3 2 36 36 H 1.09006 * 109.46544 * 299.99415 * 4 3 2 37 37 H 1.08004 * 125.85287 * 359.94867 * 9 8 6 38 38 H 1.09000 * 109.46848 * 209.96952 * 12 11 10 39 39 H 1.08993 * 109.47383 * 329.97081 * 12 11 10 40 40 H 0.97002 * 120.00581 * 180.02562 * 16 15 13 41 41 H 1.07995 * 120.08109 * 359.97438 * 23 22 21 42 42 H 1.07997 * 119.92511 * 180.27590 * 24 23 22 43 43 H 1.07998 * 119.84905 * 179.74269 * 25 24 23 44 44 H 1.07995 * 119.92575 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.07646 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0540 2.8114 -0.0013 6 6 5.3905 2.9880 -0.0013 7 8 6.1308 2.0240 -0.0060 8 6 5.9523 4.3466 -0.0025 9 6 5.2247 5.5560 -0.0031 10 7 6.0748 6.5454 -0.0036 11 7 7.3771 6.0341 -0.0039 12 6 8.6089 6.8272 -0.0039 13 6 9.0312 7.0993 1.4169 14 1 8.4408 6.7199 2.2378 15 6 10.1706 7.8336 1.6687 16 7 10.8893 8.2961 0.6692 17 14 10.6945 8.1703 3.4299 18 1 9.7236 7.5448 4.3633 19 1 12.0447 7.5980 3.6628 20 1 10.7311 9.6364 3.6637 21 6 7.3058 4.6845 0.0018 22 6 8.4457 3.7448 0.0083 23 6 9.5309 3.9530 -0.8452 24 6 10.5946 3.0748 -0.8299 25 6 10.5828 1.9837 0.0209 26 6 9.5077 1.7681 0.8648 27 6 8.4400 2.6415 0.8639 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9330 0.9287 -0.8908 36 1 3.9336 0.9285 0.8892 37 1 4.1485 5.6467 -0.0036 38 1 9.3962 6.2754 -0.5175 39 1 8.4327 7.7720 -0.5179 40 1 11.6912 8.8124 0.8463 41 1 9.5394 4.8018 -1.5129 42 1 11.4367 3.2370 -1.4863 43 1 11.4163 1.2969 0.0259 44 1 9.5046 0.9142 1.5261 45 1 7.6017 2.4723 1.5234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759068174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:48 Heat of formation + Delta-G solvation = -19.336715 kcal Electronic energy + Delta-G solvation = -27413.762271 eV Core-core repulsion = 23589.663475 eV Total energy + Delta-G solvation = -3824.098796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.49367 -40.90544 -39.71363 -37.64173 -35.89208 -35.78831 -33.91905 -33.07733 -31.80691 -30.75773 -29.84563 -29.25472 -26.04453 -24.83515 -24.07997 -23.58813 -23.14514 -22.06155 -21.57739 -20.62978 -19.07167 -18.69597 -18.11870 -17.61636 -17.16880 -17.01951 -16.61248 -16.33023 -15.87088 -15.56282 -15.40157 -15.03104 -14.73501 -14.57652 -14.46155 -14.36485 -14.09673 -13.99317 -13.64335 -13.52647 -13.08144 -13.01446 -12.77376 -12.76116 -12.48508 -12.36168 -12.14172 -12.01343 -11.94829 -11.90459 -11.83910 -11.65338 -11.33837 -11.25100 -10.78284 -10.73107 -9.89411 -9.78944 -9.35750 -8.39646 -6.54736 -0.17969 0.53461 0.73372 1.13891 1.33968 1.35655 1.40339 1.49378 1.89601 2.20759 2.30595 2.92104 2.93003 3.37958 3.63939 3.84385 3.94801 3.96329 4.02035 4.06913 4.20079 4.23778 4.26458 4.36829 4.38734 4.56255 4.60516 4.64152 4.74363 4.79922 4.88152 4.89907 4.93580 4.96512 5.06329 5.13181 5.23198 5.34924 5.43044 5.43409 5.49245 5.50522 5.55486 5.55531 5.58808 5.71685 5.88322 6.06595 6.50468 6.65364 6.89811 7.15222 8.68829 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.003268 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.394790 B = 8565.514181 C = 9706.827917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.113 4.113 4 C 0.064 3.936 5 O -0.354 6.354 6 C 0.552 3.448 7 O -0.531 6.531 8 C -0.310 4.310 9 C 0.098 3.902 10 N -0.327 5.327 11 N -0.326 5.326 12 C 0.261 3.739 13 C -0.553 4.553 14 H 0.047 0.953 15 C 0.028 3.972 16 N -0.913 5.913 17 Si 0.968 3.032 18 H -0.274 1.274 19 H -0.268 1.268 20 H -0.271 1.271 21 C 0.195 3.805 22 C -0.065 4.065 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.099 4.099 26 C -0.130 4.130 27 C -0.058 4.058 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.229 0.771 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.275 0.725 41 H 0.110 0.890 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 -16.956 -1.763 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.150 4.150 4 C -0.010 4.010 5 O -0.270 6.270 6 C 0.399 3.601 7 O -0.423 6.423 8 C -0.323 4.323 9 C -0.088 4.088 10 N -0.147 5.147 11 N -0.101 5.101 12 C 0.143 3.857 13 C -0.592 4.592 14 H 0.066 0.934 15 C -0.174 4.174 16 N -0.551 5.551 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.192 1.192 20 H -0.196 1.196 21 C 0.059 3.941 22 C -0.067 4.067 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.117 4.117 26 C -0.148 4.148 27 C -0.077 4.077 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.245 0.755 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.165 0.835 43 H 0.178 0.822 44 H 0.170 0.830 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.693 -15.708 -1.836 19.090 hybrid contribution 0.238 -0.089 0.622 0.672 sum -10.454 -15.796 -1.214 18.981 Atomic orbital electron populations 1.21748 0.94444 1.02352 1.02252 1.21432 0.96919 0.94580 1.02818 1.21609 0.90513 0.98871 1.04047 1.23296 0.96156 0.79025 1.02511 1.86516 1.22577 1.33506 1.84451 1.19667 0.80714 0.87748 0.71975 1.90811 1.60390 1.42518 1.48542 1.19246 0.90955 0.92691 1.29441 1.24521 1.01179 0.87661 0.95393 1.77134 0.87467 1.24467 1.25619 1.49440 1.07095 1.03746 1.49857 1.19646 0.76789 0.90629 0.98626 1.21332 1.10366 1.36191 0.91262 0.93427 1.25652 0.95383 0.94203 1.02155 1.69981 1.16651 1.35624 1.32795 0.85358 0.78405 0.78395 0.78690 1.19913 1.19247 1.19592 1.20217 0.94220 0.84697 0.94959 1.18070 0.92693 0.95369 1.00550 1.21323 0.93659 0.99225 0.98318 1.21301 0.97946 0.94951 1.00573 1.21642 0.98670 0.97132 0.94246 1.21351 0.93280 0.99798 1.00331 1.21122 0.98020 0.92290 0.96293 0.92395 0.91784 0.92423 0.91370 0.91364 0.90514 0.90503 0.91459 0.91346 0.75496 0.92124 0.94727 0.91607 0.87158 0.83476 0.82201 0.82995 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.46 5.93 30.59 0.18 -1.27 16 3 C -0.11 -1.75 5.59 30.59 0.17 -1.58 16 4 C 0.06 1.37 5.48 71.98 0.39 1.77 16 5 O -0.35 -10.00 10.07 -57.25 -0.58 -10.57 16 6 C 0.55 19.13 7.83 70.12 0.55 19.68 16 7 O -0.53 -19.60 12.76 19.65 0.25 -19.35 16 8 C -0.31 -12.03 6.12 -19.96 -0.12 -12.16 16 9 C 0.10 3.60 11.84 85.61 1.01 4.61 16 10 N -0.33 -14.65 12.48 -56.37 -0.70 -15.36 16 11 N -0.33 -15.63 3.59 -337.99 -1.21 -16.84 16 12 C 0.26 13.73 5.95 85.63 0.51 14.24 16 13 C -0.55 -31.13 9.39 25.60 0.24 -30.89 16 14 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 15 C 0.03 1.51 5.46 84.65 0.46 1.98 16 16 N -0.91 -51.01 13.29 21.44 0.28 -50.73 16 17 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 C 0.20 8.54 6.51 41.45 0.27 8.81 16 22 C -0.06 -2.65 5.25 -20.10 -0.11 -2.76 16 23 C -0.11 -4.07 8.52 22.54 0.19 -3.88 16 24 C -0.13 -4.01 10.03 22.23 0.22 -3.78 16 25 C -0.10 -2.64 10.04 22.33 0.22 -2.42 16 26 C -0.13 -3.79 10.03 22.23 0.22 -3.57 16 27 C -0.06 -2.11 7.55 22.53 0.17 -1.94 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.23 6.04 8.06 -2.91 -0.02 6.02 16 38 H 0.06 3.18 5.08 -2.39 -0.01 3.16 16 39 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.11 4.38 6.54 -2.91 -0.02 4.36 16 42 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 44 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 45 H 0.12 4.28 6.78 -2.91 -0.02 4.26 16 Total: -1.00 -66.87 382.63 6.37 -60.50 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.99 Total: 21.10 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.31 Total: -14.00 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -1.63 Total: -82.93 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.33 Total: -29.92 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.87 6.37 -60.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759068174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.166 kcal (2) G-P(sol) polarization free energy of solvation -66.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds