Wall clock time and date at job start Tue Mar 31 2020 15:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33614 * 1 3 3 C 1.47607 * 126.11232 * 2 1 4 4 C 1.38937 * 133.94408 * 0.04794 * 3 2 1 5 5 C 1.38107 * 119.75511 * 179.97438 * 4 3 2 6 6 C 1.38595 * 120.49165 * 0.02562 * 5 4 3 7 7 C 1.37986 * 120.56375 * 359.97438 * 6 5 4 8 8 C 1.39294 * 119.76699 * 0.02562 * 7 6 5 9 9 C 1.47128 * 133.63677 * 180.02562 * 8 7 6 10 10 O 1.21651 * 125.44380 * 359.95654 * 9 8 7 11 11 N 1.34499 * 109.11872 * 179.97438 * 9 8 7 12 12 C 1.46497 * 124.94636 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47026 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47222 * 60.02753 * 12 11 9 15 15 C 1.50703 * 109.47139 * 300.02571 * 12 11 9 16 16 O 1.21281 * 119.99754 * 359.97438 * 15 12 11 17 17 N 1.34775 * 119.99993 * 179.97438 * 15 12 11 18 18 C 1.46504 * 119.99588 * 180.02562 * 17 15 12 19 19 H 1.08994 * 109.47267 * 35.00052 * 18 17 15 20 20 C 1.50699 * 109.46541 * 155.00195 * 18 17 15 21 21 H 1.08002 * 120.00464 * 359.97438 * 20 18 17 22 22 C 1.37880 * 119.99647 * 179.97438 * 20 18 17 23 23 N 1.31508 * 120.00328 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99869 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46710 * 60.00199 * 24 22 20 26 26 H 1.48505 * 109.47043 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47307 * 300.00131 * 24 22 20 28 28 C 1.52998 * 109.47252 * 275.00035 * 18 17 15 29 29 C 1.52997 * 109.47166 * 65.00143 * 28 18 17 30 30 H 1.08001 * 119.99662 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.99885 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.11674 * 359.96385 * 4 3 2 33 33 H 1.08002 * 119.75307 * 180.27458 * 5 4 3 34 34 H 1.08003 * 119.71677 * 179.97438 * 6 5 4 35 35 H 1.07994 * 120.11583 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47000 * 59.99664 * 14 12 11 37 37 H 1.08995 * 109.47063 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.46463 * 300.00154 * 14 12 11 39 39 H 0.96996 * 120.00173 * 0.02562 * 17 15 12 40 40 H 0.96999 * 120.00911 * 180.02562 * 23 22 20 41 41 H 1.08999 * 109.47315 * 185.00215 * 28 18 17 42 42 H 1.09000 * 109.47120 * 305.00168 * 28 18 17 43 43 H 1.08999 * 109.47062 * 300.00227 * 29 28 18 44 44 H 1.09000 * 109.47081 * 60.00001 * 29 28 18 45 45 H 1.09000 * 109.47436 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1925 0.0000 4 6 1.9662 2.5610 0.0008 5 6 3.0288 3.4431 0.0011 6 6 4.3327 2.9734 0.0000 7 6 4.5902 1.6178 -0.0009 8 6 3.5313 0.7128 -0.0011 9 6 3.4514 -0.7563 -0.0015 10 8 4.4026 -1.5146 -0.0024 11 7 2.1585 -1.1271 -0.0011 12 6 1.6829 -2.5128 -0.0018 13 1 0.5930 -2.5228 -0.0017 14 6 2.1996 -3.2300 1.2470 15 6 2.1917 -3.2179 -1.2327 16 8 2.8830 -2.6214 -2.0310 17 7 1.8784 -4.5112 -1.4464 18 6 2.3735 -5.1967 -2.6428 19 1 3.3692 -4.8270 -2.8874 20 6 2.4382 -6.6794 -2.3813 21 1 2.1407 -7.0718 -1.4201 22 6 2.8772 -7.5351 -3.3694 23 7 3.2399 -7.0573 -4.5397 24 14 2.9581 -9.3730 -3.0452 25 1 1.6017 -9.8767 -2.7108 26 1 3.4586 -10.0680 -4.2583 27 1 3.8775 -9.6352 -1.9089 28 6 1.4270 -4.9261 -3.8140 29 6 1.4567 -3.4361 -4.1600 30 1 -0.5399 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 0.9524 2.9334 0.0011 33 1 2.8423 4.5069 0.0062 34 1 5.1543 3.6745 -0.0002 35 1 5.6091 1.2598 -0.0013 36 1 1.8316 -2.7199 2.1373 37 1 1.8454 -4.2607 1.2467 38 1 3.2896 -3.2198 1.2469 39 1 1.3252 -4.9880 -0.8082 40 1 3.5483 -7.6592 -5.2350 41 1 1.7453 -5.5066 -4.6800 42 1 0.4133 -5.2145 -3.5361 43 1 1.1383 -2.8556 -3.2941 44 1 2.4704 -3.1477 -4.4379 45 1 0.7827 -3.2434 -4.9947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762718897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:19 Heat of formation + Delta-G solvation = -4.535897 kcal Electronic energy + Delta-G solvation = -28389.728838 eV Core-core repulsion = 24566.271854 eV Total energy + Delta-G solvation = -3823.456984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65744 -39.22165 -37.97430 -36.67182 -35.02137 -33.55597 -32.27342 -31.76736 -30.88970 -30.16043 -29.55845 -26.95663 -25.04086 -23.69637 -23.39364 -22.54383 -21.55078 -20.42223 -19.39433 -19.03315 -17.68046 -17.04588 -16.45596 -16.12058 -15.89854 -15.24799 -15.13549 -14.70765 -14.63054 -14.41724 -14.12772 -13.91308 -13.80501 -13.37883 -12.91612 -12.69501 -12.65015 -12.56988 -12.35396 -12.05418 -11.87079 -11.61027 -11.51137 -11.32099 -11.24965 -11.22820 -10.98175 -10.80325 -10.31636 -10.17869 -9.81498 -9.62367 -9.38014 -9.23379 -9.04326 -8.83656 -8.48071 -8.05505 -7.81114 -6.10226 -4.19831 0.28109 0.92908 2.12718 2.59736 3.14926 3.26585 3.31557 3.32325 3.35138 3.66992 3.90624 4.09180 4.26841 4.39114 4.59729 4.71699 4.88842 5.02687 5.06906 5.15972 5.20424 5.22771 5.38201 5.38661 5.59582 5.65995 5.73344 5.80407 5.84409 6.03001 6.11347 6.13604 6.19575 6.38818 6.44993 6.55166 6.66025 6.74728 7.03020 7.10093 7.20744 7.37307 7.45902 7.62525 7.73252 7.91902 8.12951 8.19299 8.65340 8.78961 9.12307 9.47117 10.95112 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.003065 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.875804 B = 9132.545780 C = 9163.746742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.144 3.856 3 C -0.049 4.049 4 C -0.092 4.092 5 C -0.094 4.094 6 C -0.123 4.123 7 C -0.045 4.045 8 C -0.148 4.148 9 C 0.570 3.430 10 O -0.479 6.479 11 N -0.543 5.543 12 C 0.130 3.870 13 H 0.114 0.886 14 C -0.162 4.162 15 C 0.493 3.507 16 O -0.525 6.525 17 N -0.704 5.704 18 C 0.273 3.727 19 H 0.049 0.951 20 C -0.534 4.534 21 H 0.061 0.939 22 C 0.067 3.933 23 N -0.882 5.882 24 Si 0.901 3.099 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 C -0.127 4.127 29 C -0.135 4.135 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.387 0.613 40 H 0.265 0.735 41 H 0.099 0.901 42 H 0.031 0.969 43 H 0.036 0.964 44 H 0.049 0.951 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 18.925 11.891 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.049 3.951 3 C -0.050 4.050 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.141 4.141 7 C -0.064 4.064 8 C -0.151 4.151 9 C 0.359 3.641 10 O -0.352 6.352 11 N -0.267 5.267 12 C 0.024 3.976 13 H 0.132 0.868 14 C -0.220 4.220 15 C 0.275 3.725 16 O -0.402 6.402 17 N -0.353 5.353 18 C 0.171 3.829 19 H 0.067 0.933 20 C -0.572 4.572 21 H 0.079 0.921 22 C -0.137 4.137 23 N -0.519 5.519 24 Si 0.729 3.271 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 C -0.165 4.165 29 C -0.193 4.193 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.078 18.682 11.090 22.311 hybrid contribution -0.375 -1.281 0.282 1.364 sum -5.453 17.400 11.371 21.490 Atomic orbital electron populations 1.23698 0.91642 1.03645 1.05794 1.18490 0.91322 0.84164 1.01156 1.19472 0.93118 0.92857 0.99576 1.20557 0.99887 0.90231 1.00348 1.21244 0.92282 0.99829 0.97886 1.21200 0.97269 0.94931 1.00726 1.20788 0.98615 0.91969 0.95038 1.20658 0.94737 0.94409 1.05293 1.17964 0.82422 0.87711 0.75975 1.90837 1.39081 1.59192 1.46082 1.45328 1.06412 1.04624 1.70295 1.21126 1.00371 0.79572 0.96497 0.86843 1.22119 1.04082 1.00675 0.95113 1.20271 0.82006 0.83507 0.86686 1.90712 1.37566 1.65715 1.46190 1.46408 1.52225 1.09916 1.26753 1.18778 0.94085 0.90571 0.79420 0.93321 1.21179 1.45725 0.90817 0.99522 0.92133 1.24884 0.94754 0.99132 0.94888 1.69880 1.42936 1.35223 1.03897 0.86517 0.78420 0.84491 0.77717 1.20176 1.21142 1.20170 1.21934 0.98195 0.93987 1.02433 1.21823 1.00361 0.98544 0.98558 0.85562 0.86796 0.84987 0.84918 0.84894 0.84758 0.91549 0.89976 0.90326 0.78065 0.92507 0.88255 0.95037 0.94545 0.93236 0.95874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.01 14.31 29.11 0.42 -1.59 16 2 C 0.14 1.87 6.73 -82.16 -0.55 1.32 16 3 C -0.05 -0.61 6.28 -104.79 -0.66 -1.27 16 4 C -0.09 -0.83 10.08 -39.37 -0.40 -1.23 16 5 C -0.09 -0.73 10.03 -39.50 -0.40 -1.13 16 6 C -0.12 -1.08 10.02 -39.54 -0.40 -1.48 16 7 C -0.05 -0.54 10.09 -39.28 -0.40 -0.94 16 8 C -0.15 -2.19 6.36 -104.88 -0.67 -2.86 16 9 C 0.57 10.44 6.67 -12.78 -0.09 10.35 16 10 O -0.48 -10.50 15.63 -8.62 -0.13 -10.64 16 11 N -0.54 -8.71 2.44 -107.74 -0.26 -8.98 16 12 C 0.13 2.01 3.20 -69.08 -0.22 1.79 16 13 H 0.11 1.37 6.49 -51.93 -0.34 1.03 16 14 C -0.16 -2.21 9.10 37.16 0.34 -1.87 16 15 C 0.49 10.13 5.46 -10.98 -0.06 10.07 16 16 O -0.53 -13.03 12.06 -8.30 -0.10 -13.13 16 17 N -0.70 -14.69 4.91 -54.93 -0.27 -14.96 16 18 C 0.27 6.98 2.24 -69.08 -0.15 6.83 16 19 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 20 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 23 N -0.88 -25.09 11.29 55.43 0.63 -24.47 16 24 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 28 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 29 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.11 1.02 6.70 -52.49 -0.35 0.66 16 32 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.98 7.56 -51.93 -0.39 0.59 16 38 H 0.08 1.31 6.87 -51.93 -0.36 0.95 16 39 H 0.39 6.84 7.96 -40.82 -0.32 6.52 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 44 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -34.80 369.12 -9.14 -43.95 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.09 Total: 7.72 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.45 Total: -0.86 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.09 Total: -48.40 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.23 Total: -23.77 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.80 -9.14 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.413 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds