Wall clock time and date at job start Tue Mar 31 2020 15:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33614 * 1 3 3 C 1.47607 * 126.11232 * 2 1 4 4 C 1.38937 * 133.94408 * 0.04794 * 3 2 1 5 5 C 1.38107 * 119.75511 * 179.97438 * 4 3 2 6 6 C 1.38595 * 120.49165 * 0.02562 * 5 4 3 7 7 C 1.37986 * 120.56375 * 359.97438 * 6 5 4 8 8 C 1.39294 * 119.76699 * 0.02562 * 7 6 5 9 9 C 1.47128 * 133.63677 * 180.02562 * 8 7 6 10 10 O 1.21651 * 125.44380 * 359.95654 * 9 8 7 11 11 N 1.34499 * 109.11872 * 179.97438 * 9 8 7 12 12 C 1.46497 * 124.94636 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47026 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47222 * 60.02753 * 12 11 9 15 15 C 1.50703 * 109.47139 * 300.02571 * 12 11 9 16 16 O 1.21281 * 119.99754 * 359.97438 * 15 12 11 17 17 N 1.34775 * 119.99993 * 179.97438 * 15 12 11 18 18 C 1.46504 * 119.99588 * 180.02562 * 17 15 12 19 19 H 1.08994 * 109.47267 * 35.00052 * 18 17 15 20 20 C 1.50699 * 109.46541 * 155.00195 * 18 17 15 21 21 H 1.08002 * 120.00464 * 359.97438 * 20 18 17 22 22 C 1.37880 * 119.99647 * 179.97438 * 20 18 17 23 23 N 1.31508 * 120.00328 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99869 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46710 * 60.00199 * 24 22 20 26 26 H 1.48505 * 109.47043 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47307 * 300.00131 * 24 22 20 28 28 C 1.52998 * 109.47252 * 275.00035 * 18 17 15 29 29 C 1.52997 * 109.47166 * 65.00143 * 28 18 17 30 30 H 1.08001 * 119.99662 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.99885 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.11674 * 359.96385 * 4 3 2 33 33 H 1.08002 * 119.75307 * 180.27458 * 5 4 3 34 34 H 1.08003 * 119.71677 * 179.97438 * 6 5 4 35 35 H 1.07994 * 120.11583 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47000 * 59.99664 * 14 12 11 37 37 H 1.08995 * 109.47063 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.46463 * 300.00154 * 14 12 11 39 39 H 0.96996 * 120.00173 * 0.02562 * 17 15 12 40 40 H 0.96999 * 120.00911 * 180.02562 * 23 22 20 41 41 H 1.08999 * 109.47315 * 185.00215 * 28 18 17 42 42 H 1.09000 * 109.47120 * 305.00168 * 28 18 17 43 43 H 1.08999 * 109.47062 * 300.00227 * 29 28 18 44 44 H 1.09000 * 109.47081 * 60.00001 * 29 28 18 45 45 H 1.09000 * 109.47436 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1925 0.0000 4 6 1.9662 2.5610 0.0008 5 6 3.0288 3.4431 0.0011 6 6 4.3327 2.9734 0.0000 7 6 4.5902 1.6178 -0.0009 8 6 3.5313 0.7128 -0.0011 9 6 3.4514 -0.7563 -0.0015 10 8 4.4026 -1.5146 -0.0024 11 7 2.1585 -1.1271 -0.0011 12 6 1.6829 -2.5128 -0.0018 13 1 0.5930 -2.5228 -0.0017 14 6 2.1996 -3.2300 1.2470 15 6 2.1917 -3.2179 -1.2327 16 8 2.8830 -2.6214 -2.0310 17 7 1.8784 -4.5112 -1.4464 18 6 2.3735 -5.1967 -2.6428 19 1 3.3692 -4.8270 -2.8874 20 6 2.4382 -6.6794 -2.3813 21 1 2.1407 -7.0718 -1.4201 22 6 2.8772 -7.5351 -3.3694 23 7 3.2399 -7.0573 -4.5397 24 14 2.9581 -9.3730 -3.0452 25 1 1.6017 -9.8767 -2.7108 26 1 3.4586 -10.0680 -4.2583 27 1 3.8775 -9.6352 -1.9089 28 6 1.4270 -4.9261 -3.8140 29 6 1.4567 -3.4361 -4.1600 30 1 -0.5399 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 0.9524 2.9334 0.0011 33 1 2.8423 4.5069 0.0062 34 1 5.1543 3.6745 -0.0002 35 1 5.6091 1.2598 -0.0013 36 1 1.8316 -2.7199 2.1373 37 1 1.8454 -4.2607 1.2467 38 1 3.2896 -3.2198 1.2469 39 1 1.3252 -4.9880 -0.8082 40 1 3.5483 -7.6592 -5.2350 41 1 1.7453 -5.5066 -4.6800 42 1 0.4133 -5.2145 -3.5361 43 1 1.1383 -2.8556 -3.2941 44 1 2.4704 -3.1477 -4.4379 45 1 0.7827 -3.2434 -4.9947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762718897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:17 Heat of formation + Delta-G solvation = -27.080832 kcal Electronic energy + Delta-G solvation = -28390.706460 eV Core-core repulsion = 24566.271854 eV Total energy + Delta-G solvation = -3824.434606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.71904 -40.71982 -39.09176 -37.88175 -36.90680 -34.87764 -34.13018 -32.74869 -32.56382 -30.97148 -30.65297 -28.93477 -26.21249 -25.17668 -24.54670 -23.87997 -22.62286 -21.91743 -21.15065 -20.22910 -19.13435 -18.18409 -17.79369 -17.45625 -17.26381 -16.88463 -16.41524 -16.35493 -15.85932 -15.55143 -15.33833 -15.02598 -14.92817 -14.62250 -14.60207 -14.16440 -13.82659 -13.69802 -13.53829 -13.30954 -13.24653 -13.16546 -13.03873 -12.93826 -12.67733 -12.57037 -12.44136 -12.20930 -12.09872 -12.06850 -11.63425 -11.10875 -11.05590 -10.75501 -10.55244 -10.13459 -9.93032 -9.68026 -9.00181 -8.18148 -6.36367 -0.58703 0.16596 1.28719 1.41841 1.44967 1.49715 1.53112 1.74218 2.03970 2.35609 2.60299 2.82957 3.10931 3.11803 3.33666 3.74804 3.83116 3.84653 3.90043 4.14492 4.32481 4.33283 4.42626 4.43843 4.50822 4.58996 4.67229 4.70654 4.75052 4.85467 4.98397 4.99899 5.01327 5.10447 5.19117 5.23987 5.36841 5.38740 5.41852 5.51745 5.58165 5.74329 5.77643 5.87570 5.90408 6.04751 6.13380 6.71353 6.85430 6.98359 7.30566 7.53229 8.87204 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.003065 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.875804 B = 9132.545780 C = 9163.746742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.093 3.907 3 C -0.052 4.052 4 C -0.089 4.089 5 C -0.077 4.077 6 C -0.121 4.121 7 C -0.065 4.065 8 C -0.199 4.199 9 C 0.551 3.449 10 O -0.549 6.549 11 N -0.546 5.546 12 C 0.136 3.864 13 H 0.158 0.842 14 C -0.154 4.154 15 C 0.486 3.514 16 O -0.574 6.574 17 N -0.699 5.699 18 C 0.282 3.718 19 H -0.015 1.015 20 C -0.549 4.549 21 H 0.074 0.926 22 C 0.013 3.987 23 N -0.917 5.917 24 Si 0.972 3.028 25 H -0.259 1.259 26 H -0.287 1.287 27 H -0.274 1.274 28 C -0.118 4.118 29 C -0.119 4.119 30 H 0.164 0.836 31 H 0.127 0.873 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.038 0.962 39 H 0.405 0.595 40 H 0.265 0.735 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.014 0.986 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 21.059 13.594 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.001 3.999 3 C -0.053 4.053 4 C -0.106 4.106 5 C -0.095 4.095 6 C -0.138 4.138 7 C -0.084 4.084 8 C -0.202 4.202 9 C 0.343 3.657 10 O -0.428 6.428 11 N -0.269 5.269 12 C 0.030 3.970 13 H 0.176 0.824 14 C -0.212 4.212 15 C 0.271 3.729 16 O -0.454 6.454 17 N -0.349 5.349 18 C 0.178 3.822 19 H 0.003 0.997 20 C -0.587 4.587 21 H 0.092 0.908 22 C -0.187 4.187 23 N -0.555 5.555 24 Si 0.797 3.203 25 H -0.183 1.183 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.157 4.157 29 C -0.177 4.177 30 H 0.182 0.818 31 H 0.145 0.855 32 H 0.189 0.811 33 H 0.195 0.805 34 H 0.181 0.819 35 H 0.139 0.861 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.057 0.943 39 H 0.241 0.759 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.180 20.849 12.838 26.149 hybrid contribution 0.795 -1.795 -0.249 1.978 sum -8.385 19.055 12.588 24.328 Atomic orbital electron populations 1.24315 0.90188 1.06075 0.99269 1.18880 0.92312 0.83300 1.05456 1.19709 0.91559 0.94309 0.99755 1.21061 1.02240 0.88511 0.98837 1.21822 0.91143 1.01885 0.94626 1.21576 0.99309 0.93520 0.99442 1.20969 0.97735 0.93566 0.96168 1.20677 0.97226 0.92723 1.09589 1.18736 0.82656 0.89298 0.75005 1.90766 1.41025 1.60979 1.50000 1.45409 1.06348 1.05441 1.69746 1.21189 1.02415 0.79483 0.93881 0.82435 1.22095 1.01540 1.02064 0.95529 1.21250 0.80839 0.83066 0.87762 1.90695 1.39469 1.66791 1.48395 1.46129 1.52450 1.10370 1.25929 1.18321 0.91533 0.90595 0.81702 0.99722 1.21552 1.45666 0.91324 1.00119 0.90759 1.25821 0.94231 1.04038 0.94567 1.70054 1.43744 1.36827 1.04893 0.85399 0.79084 0.78518 0.77343 1.18341 1.21235 1.19927 1.21756 0.98472 0.94512 1.00919 1.21638 0.98895 0.97448 0.99688 0.81799 0.85495 0.81081 0.80468 0.81887 0.86070 0.88464 0.88145 0.94320 0.75915 0.92619 0.91085 0.93280 0.93902 0.96642 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 14.31 66.77 0.96 -1.36 16 2 C 0.09 2.25 6.73 39.34 0.26 2.52 16 3 C -0.05 -1.22 6.28 -19.98 -0.13 -1.35 16 4 C -0.09 -1.25 10.08 22.41 0.23 -1.02 16 5 C -0.08 -0.88 10.03 22.32 0.22 -0.65 16 6 C -0.12 -1.90 10.02 22.30 0.22 -1.68 16 7 C -0.07 -1.67 10.09 22.46 0.23 -1.45 16 8 C -0.20 -6.27 6.36 -20.03 -0.13 -6.40 16 9 C 0.55 21.99 6.67 86.62 0.58 22.57 16 10 O -0.55 -27.15 15.63 9.06 0.14 -27.01 16 11 N -0.55 -17.84 2.44 -613.16 -1.50 -19.34 16 12 C 0.14 4.15 3.20 44.25 0.14 4.29 16 13 H 0.16 3.30 6.49 -2.39 -0.02 3.29 16 14 C -0.15 -4.20 9.10 71.98 0.66 -3.55 16 15 C 0.49 20.75 5.46 87.66 0.48 21.23 16 16 O -0.57 -30.63 12.06 10.22 0.12 -30.50 16 17 N -0.70 -29.85 4.91 -446.10 -2.19 -32.04 16 18 C 0.28 15.11 2.24 44.24 0.10 15.21 16 19 H -0.02 -1.00 7.58 -2.39 -0.02 -1.02 16 20 C -0.55 -29.81 8.73 25.60 0.22 -29.59 16 21 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 22 C 0.01 0.74 5.29 84.66 0.45 1.19 16 23 N -0.92 -54.27 11.29 21.45 0.24 -54.03 16 24 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 29 C -0.12 -5.64 8.51 71.98 0.61 -5.02 16 30 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.13 1.54 6.70 -2.91 -0.02 1.53 16 32 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 33 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 2.29 7.56 -2.39 -0.02 2.27 16 38 H 0.04 1.38 6.87 -2.39 -0.02 1.36 16 39 H 0.41 14.07 7.96 -92.71 -0.74 13.34 16 40 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.07 4.03 5.95 -2.39 -0.01 4.02 16 42 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 44 H 0.01 0.78 7.85 -2.39 -0.02 0.76 16 45 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -87.51 369.12 4.39 -83.12 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.28 Total: 25.56 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.27 Total: 9.15 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.45 Total: -105.41 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: 0.26 Total: -57.51 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -87.51 4.39 -83.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.040 kcal (2) G-P(sol) polarization free energy of solvation -87.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds