Wall clock time and date at job start Tue Mar 31 2020 15:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33608 * 1 3 3 C 1.47609 * 126.11586 * 2 1 4 4 C 1.38930 * 133.93553 * 359.96684 * 3 2 1 5 5 C 1.38112 * 119.74919 * 180.24741 * 4 3 2 6 6 C 1.38597 * 120.49455 * 359.53416 * 5 4 3 7 7 C 1.37995 * 120.55682 * 0.45004 * 6 5 4 8 8 C 1.39286 * 119.77006 * 359.78961 * 7 6 5 9 9 C 1.47133 * 133.63884 * 179.97438 * 8 7 6 10 10 O 1.21647 * 125.43814 * 0.02562 * 9 8 7 11 11 N 1.34500 * 109.11516 * 180.02562 * 9 8 7 12 12 C 1.46504 * 124.94143 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46860 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46548 * 299.97320 * 12 11 9 15 15 C 1.50694 * 109.47251 * 59.96971 * 12 11 9 16 16 O 1.21279 * 120.00220 * 0.02562 * 15 12 11 17 17 N 1.34782 * 119.99985 * 180.02562 * 15 12 11 18 18 C 1.46492 * 120.00148 * 180.02562 * 17 15 12 19 19 H 1.08998 * 109.47366 * 34.99384 * 18 17 15 20 20 C 1.50698 * 109.47350 * 155.00135 * 18 17 15 21 21 H 1.07999 * 119.99904 * 5.45131 * 20 18 17 22 22 C 1.37881 * 120.00158 * 185.45226 * 20 18 17 23 23 N 1.31510 * 119.99686 * 9.47950 * 22 20 18 24 24 Si 1.86803 * 119.99982 * 189.48197 * 22 20 18 25 25 H 1.48497 * 109.46912 * 84.99471 * 24 22 20 26 26 H 1.48500 * 109.46786 * 204.99225 * 24 22 20 27 27 H 1.48501 * 109.46944 * 324.99322 * 24 22 20 28 28 C 1.53010 * 109.46930 * 274.99990 * 18 17 15 29 29 C 1.53001 * 109.46917 * 65.23002 * 28 18 17 30 30 H 1.08004 * 119.99840 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00712 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.12763 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.75466 * 179.74678 * 5 4 3 34 34 H 1.07990 * 119.72104 * 180.23798 * 6 5 4 35 35 H 1.07997 * 120.11390 * 179.80631 * 7 6 5 36 36 H 1.08992 * 109.47828 * 60.00200 * 14 12 11 37 37 H 1.09008 * 109.47065 * 180.02562 * 14 12 11 38 38 H 1.09009 * 109.47338 * 299.99925 * 14 12 11 39 39 H 0.97003 * 119.99734 * 0.02562 * 17 15 12 40 40 H 0.97002 * 119.99638 * 179.97438 * 23 22 20 41 41 H 1.09003 * 109.47021 * 185.22603 * 28 18 17 42 42 H 1.09000 * 109.46727 * 305.22970 * 28 18 17 43 43 H 1.08997 * 109.46709 * 180.02562 * 29 28 18 44 44 H 1.09003 * 109.46949 * 299.99645 * 29 28 18 45 45 H 1.08991 * 109.47465 * 59.99820 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1924 0.0000 4 6 1.9661 2.5608 -0.0006 5 6 3.0288 3.4430 -0.0056 6 6 4.3327 2.9734 -0.0003 7 6 4.5901 1.6177 0.0007 8 6 3.5313 0.7127 0.0008 9 6 3.4513 -0.7565 0.0012 10 8 4.4026 -1.5147 0.0021 11 7 2.1584 -1.1271 0.0005 12 6 1.6828 -2.5128 0.0012 13 1 0.5928 -2.5228 0.0009 14 6 2.1998 -3.2300 -1.2475 15 6 2.1913 -3.2179 1.2322 16 8 2.8825 -2.6215 2.0306 17 7 1.8779 -4.5112 1.4458 18 6 2.3718 -5.1965 2.6427 19 1 2.4011 -4.4954 3.4768 20 6 1.4526 -6.3417 2.9811 21 1 0.6382 -6.5945 2.3184 22 6 1.6514 -7.0670 4.1368 23 7 2.5185 -6.6504 5.0335 24 14 0.6891 -8.6412 4.4288 25 1 1.3827 -9.7752 3.7669 26 1 0.5966 -8.9013 5.8879 27 1 -0.6767 -8.4985 3.8637 28 6 3.7799 -5.7336 2.3784 29 6 4.7404 -4.5623 2.1633 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5401 -0.9352 0.0004 32 1 0.9524 2.9334 -0.0016 33 1 2.8423 4.5069 -0.0102 34 1 5.1542 3.6743 -0.0004 35 1 5.6090 1.2596 0.0017 36 1 3.2897 -3.2200 -1.2472 37 1 1.8456 -4.2609 -1.2473 38 1 1.8320 -2.7200 -2.1379 39 1 1.3253 -4.9883 0.8070 40 1 2.6581 -7.1604 5.8468 41 1 4.1107 -6.3223 3.2340 42 1 3.7678 -6.3619 1.4877 43 1 5.7434 -4.9449 1.9745 44 1 4.4096 -3.9735 1.3076 45 1 4.7525 -3.9340 3.0538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762718927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:31 Heat of formation + Delta-G solvation = -28.405489 kcal Electronic energy + Delta-G solvation = -28449.114496 eV Core-core repulsion = 24624.622449 eV Total energy + Delta-G solvation = -3824.492047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70842 -40.71561 -39.06628 -37.86135 -36.88339 -34.85103 -34.12205 -32.79661 -32.59057 -30.97007 -30.66834 -28.89664 -26.19206 -25.15631 -24.54906 -23.89985 -22.61132 -21.94926 -21.15459 -20.22373 -19.10171 -18.21497 -17.78712 -17.42574 -17.25846 -16.79609 -16.45320 -16.29507 -15.97558 -15.47756 -15.41293 -14.96139 -14.82012 -14.63770 -14.60898 -14.26728 -13.76859 -13.58066 -13.55540 -13.37062 -13.29618 -13.23358 -13.03421 -12.92303 -12.63306 -12.56335 -12.42080 -12.21656 -12.11272 -12.06271 -11.67516 -11.13354 -11.02148 -10.73487 -10.55089 -10.12235 -9.92227 -9.69432 -8.99639 -8.20432 -6.34480 -0.58001 0.16935 1.29245 1.43445 1.45669 1.51001 1.55369 1.75384 2.05500 2.36287 2.61231 2.83387 3.11084 3.12518 3.34250 3.75636 3.83894 3.85522 3.92160 4.14759 4.33197 4.33815 4.38090 4.44313 4.46199 4.60669 4.66809 4.68225 4.75987 4.85709 4.98434 4.99378 5.03345 5.10878 5.16311 5.24101 5.36197 5.37122 5.42012 5.47275 5.59067 5.67973 5.77590 5.87070 5.89303 6.03384 6.05585 6.74252 6.86693 6.99573 7.31705 7.53908 8.88525 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021673 B = 0.003129 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.644910 B = 8946.904252 C = 9323.417507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.094 3.906 3 C -0.053 4.053 4 C -0.090 4.090 5 C -0.078 4.078 6 C -0.121 4.121 7 C -0.064 4.064 8 C -0.198 4.198 9 C 0.552 3.448 10 O -0.541 6.541 11 N -0.547 5.547 12 C 0.135 3.865 13 H 0.154 0.846 14 C -0.153 4.153 15 C 0.486 3.514 16 O -0.574 6.574 17 N -0.699 5.699 18 C 0.282 3.718 19 H -0.003 1.003 20 C -0.547 4.547 21 H 0.078 0.922 22 C 0.015 3.985 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.271 1.271 26 H -0.290 1.290 27 H -0.259 1.259 28 C -0.109 4.109 29 C -0.120 4.120 30 H 0.163 0.837 31 H 0.126 0.874 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.123 0.877 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.406 0.594 40 H 0.264 0.736 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.039 0.961 44 H 0.045 0.955 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 19.508 -15.977 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.001 3.999 3 C -0.055 4.055 4 C -0.108 4.108 5 C -0.096 4.096 6 C -0.139 4.139 7 C -0.083 4.083 8 C -0.201 4.201 9 C 0.344 3.656 10 O -0.420 6.420 11 N -0.271 5.271 12 C 0.030 3.970 13 H 0.172 0.828 14 C -0.211 4.211 15 C 0.271 3.729 16 O -0.453 6.453 17 N -0.349 5.349 18 C 0.178 3.822 19 H 0.015 0.985 20 C -0.585 4.585 21 H 0.096 0.904 22 C -0.185 4.185 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.197 1.197 26 H -0.216 1.216 27 H -0.183 1.183 28 C -0.148 4.148 29 C -0.178 4.178 30 H 0.181 0.819 31 H 0.144 0.856 32 H 0.187 0.813 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.141 0.859 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.241 0.759 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -5.624 19.315 -15.224 25.228 hybrid contribution 0.154 -1.579 0.685 1.728 sum -5.470 17.736 -14.540 23.577 Atomic orbital electron populations 1.24293 0.90323 1.05972 0.99610 1.18881 0.92301 0.83451 1.05248 1.19705 0.91692 0.94255 0.99852 1.21053 1.02199 0.88600 0.98903 1.21815 0.91191 1.01839 0.94721 1.21581 0.99235 0.93617 0.99419 1.20970 0.97781 0.93490 0.96095 1.20699 0.97084 0.92922 1.09423 1.18678 0.82628 0.89212 0.75093 1.90753 1.40745 1.60772 1.49682 1.45417 1.06420 1.05386 1.69835 1.21187 1.02311 0.79517 0.94018 0.82848 1.22095 1.01746 1.02014 0.95266 1.21250 0.80676 0.83017 0.87942 1.90699 1.39300 1.66931 1.48395 1.46119 1.52383 1.10561 1.25816 1.18314 0.91149 0.90623 0.82082 0.98489 1.21528 1.14587 1.14846 1.07562 0.90387 1.25845 0.96523 1.01217 0.94964 1.70163 1.36928 1.39510 1.09112 0.85379 0.79220 0.79003 0.76869 1.19677 1.21574 1.18291 1.21704 0.96585 0.96625 0.99892 1.21637 0.98140 0.98046 0.99943 0.81914 0.85641 0.81257 0.80552 0.81870 0.85885 0.93865 0.88051 0.88622 0.75890 0.92692 0.93047 0.93156 0.94181 0.93553 0.96478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 14.31 66.77 0.96 -1.58 16 2 C 0.09 2.32 6.73 39.34 0.26 2.58 16 3 C -0.05 -1.28 6.28 -19.98 -0.13 -1.40 16 4 C -0.09 -1.30 10.09 22.41 0.23 -1.07 16 5 C -0.08 -0.91 10.03 22.33 0.22 -0.68 16 6 C -0.12 -1.89 10.02 22.30 0.22 -1.67 16 7 C -0.06 -1.62 10.09 22.46 0.23 -1.39 16 8 C -0.20 -6.16 6.36 -20.03 -0.13 -6.29 16 9 C 0.55 21.48 6.66 86.62 0.58 22.05 16 10 O -0.54 -25.51 15.63 9.06 0.14 -25.37 16 11 N -0.55 -17.77 2.44 -613.16 -1.50 -19.26 16 12 C 0.14 4.10 3.20 44.24 0.14 4.24 16 13 H 0.15 3.33 6.49 -2.39 -0.02 3.31 16 14 C -0.15 -3.97 9.10 71.98 0.66 -3.31 16 15 C 0.49 20.59 5.47 87.65 0.48 21.07 16 16 O -0.57 -30.43 12.06 10.21 0.12 -30.31 16 17 N -0.70 -29.53 4.92 -446.11 -2.19 -31.72 16 18 C 0.28 14.97 2.10 44.25 0.09 15.06 16 19 H 0.00 -0.18 7.52 -2.39 -0.02 -0.20 16 20 C -0.55 -29.13 8.66 25.60 0.22 -28.91 16 21 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 22 C 0.01 0.81 5.16 84.66 0.44 1.25 16 23 N -0.92 -54.68 12.16 21.45 0.26 -54.42 16 24 Si 0.97 42.33 29.55 68.60 2.03 44.36 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 28 C -0.11 -5.68 5.50 30.60 0.17 -5.52 16 29 C -0.12 -6.21 8.52 71.98 0.61 -5.59 16 30 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.13 1.69 6.70 -2.91 -0.02 1.67 16 32 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.16 1.46 8.06 -2.92 -0.02 1.43 16 35 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.04 1.45 6.87 -2.39 -0.02 1.43 16 37 H 0.10 2.15 7.56 -2.38 -0.02 2.13 16 38 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.41 13.86 7.94 -92.71 -0.74 13.12 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.05 2.94 6.80 -2.39 -0.02 2.93 16 42 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 2.42 5.64 -2.39 -0.01 2.41 16 45 H 0.02 0.93 7.86 -2.39 -0.02 0.91 16 Total: -1.00 -85.71 370.51 4.39 -81.32 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.28 Total: 26.58 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.25 Total: 8.83 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -3.43 Total: -105.41 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: 0.26 Total: -55.68 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -85.71 4.39 -81.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.912 kcal (2) G-P(sol) polarization free energy of solvation -85.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds