Wall clock time and date at job start Tue Mar 31 2020 15:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33608 * 1 3 3 C 1.47606 * 126.11459 * 2 1 4 4 C 1.38935 * 133.93926 * 0.02569 * 3 2 1 5 5 C 1.38107 * 119.75414 * 180.02562 * 4 3 2 6 6 C 1.38599 * 120.48910 * 359.97438 * 5 4 3 7 7 C 1.37986 * 120.56220 * 359.97438 * 6 5 4 8 8 C 1.39288 * 119.77433 * 0.02562 * 7 6 5 9 9 C 1.47118 * 133.64160 * 179.97438 * 8 7 6 10 10 O 1.21649 * 125.44418 * 359.97438 * 9 8 7 11 11 N 1.34505 * 109.11813 * 179.97438 * 9 8 7 12 12 C 1.46497 * 124.94698 * 179.73871 * 11 9 8 13 13 H 1.08996 * 109.47179 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46771 * 300.02572 * 12 11 9 15 15 C 1.50701 * 109.47064 * 60.02200 * 12 11 9 16 16 O 1.21276 * 119.99848 * 0.02562 * 15 12 11 17 17 N 1.34780 * 119.99727 * 180.02562 * 15 12 11 18 18 C 1.46492 * 119.99834 * 180.02562 * 17 15 12 19 19 H 1.09000 * 109.47046 * 324.99314 * 18 17 15 20 20 C 1.50707 * 109.47294 * 204.99769 * 18 17 15 21 21 H 1.08000 * 119.99300 * 359.97438 * 20 18 17 22 22 C 1.37874 * 120.00210 * 179.97438 * 20 18 17 23 23 N 1.31514 * 120.00089 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 119.99759 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46893 * 90.00052 * 24 22 20 26 26 H 1.48502 * 109.46898 * 209.99761 * 24 22 20 27 27 H 1.48492 * 109.47276 * 329.99731 * 24 22 20 28 28 C 1.53003 * 109.47824 * 84.99431 * 18 17 15 29 29 C 1.53003 * 109.46947 * 295.00140 * 28 18 17 30 30 H 1.08003 * 119.99912 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00484 * 359.97322 * 1 2 3 32 32 H 1.07996 * 120.12508 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.75636 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.71587 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.11223 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46856 * 299.99551 * 14 12 11 37 37 H 1.08996 * 109.47755 * 59.99754 * 14 12 11 38 38 H 1.09002 * 109.47403 * 180.02562 * 14 12 11 39 39 H 0.97003 * 120.00096 * 359.97438 * 17 15 12 40 40 H 0.96996 * 119.99702 * 179.97438 * 23 22 20 41 41 H 1.08997 * 109.46946 * 54.99721 * 28 18 17 42 42 H 1.08995 * 109.47526 * 175.00213 * 28 18 17 43 43 H 1.08993 * 109.47358 * 179.97438 * 29 28 18 44 44 H 1.09007 * 109.46929 * 299.99712 * 29 28 18 45 45 H 1.09002 * 109.46858 * 59.99025 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1924 0.0000 4 6 1.9661 2.5609 0.0004 5 6 3.0287 3.4431 -0.0002 6 6 4.3327 2.9733 -0.0008 7 6 4.5901 1.6177 -0.0002 8 6 3.5313 0.7126 0.0005 9 6 3.4514 -0.7564 0.0007 10 8 4.4026 -1.5147 -0.0001 11 7 2.1584 -1.1272 0.0020 12 6 1.6828 -2.5128 -0.0028 13 1 0.5929 -2.5228 -0.0009 14 6 2.1972 -3.2241 -1.2560 15 6 2.1940 -3.2236 1.2238 16 8 2.8868 -2.6310 2.0235 17 7 1.8810 -4.5179 1.4320 18 6 2.3774 -5.2088 2.6246 19 1 3.3735 -4.8402 2.8698 20 6 2.4420 -6.6904 2.3566 21 1 2.1428 -7.0785 1.3942 22 6 2.8831 -7.5503 3.3399 23 7 3.2480 -7.0776 4.5117 24 14 2.9624 -9.3869 3.0078 25 1 4.2963 -9.7325 2.4542 26 1 2.7453 -10.1290 4.2756 27 1 1.9089 -9.7590 2.0298 28 6 1.4323 -4.9436 3.7983 29 6 1.4623 -3.4550 4.1509 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9353 0.0004 32 1 0.9524 2.9334 0.0013 33 1 2.8422 4.5068 -0.0003 34 1 5.1542 3.6744 -0.0010 35 1 5.6090 1.2597 -0.0011 36 1 1.8275 -2.7099 -2.1431 37 1 3.2872 -3.2141 -1.2580 38 1 1.8430 -4.2550 -1.2599 39 1 1.3265 -4.9918 0.7925 40 1 3.5579 -7.6826 5.2035 41 1 0.4183 -5.2307 3.5202 42 1 1.7517 -5.5278 4.6612 43 1 0.7887 -3.2660 4.9867 44 1 2.4764 -3.1679 4.4290 45 1 1.1430 -2.8707 3.2879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762718929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:38 Heat of formation + Delta-G solvation = -4.577734 kcal Electronic energy + Delta-G solvation = -28387.638254 eV Core-core repulsion = 24564.179456 eV Total energy + Delta-G solvation = -3823.458798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65783 -39.22211 -37.97479 -36.67275 -35.02179 -33.55559 -32.27317 -31.76872 -30.88972 -30.16116 -29.55853 -26.95691 -25.04239 -23.69768 -23.39476 -22.54419 -21.55173 -20.42230 -19.39458 -19.03294 -17.68125 -17.04597 -16.45637 -16.12132 -15.89935 -15.24904 -15.13922 -14.70644 -14.63003 -14.41530 -14.12792 -13.91292 -13.80538 -13.37837 -12.91764 -12.69721 -12.65201 -12.57091 -12.35476 -12.05535 -11.87134 -11.61162 -11.51199 -11.32177 -11.25415 -11.23367 -10.95397 -10.82645 -10.30686 -10.18197 -9.81583 -9.62111 -9.37929 -9.23423 -9.03979 -8.83772 -8.48078 -8.05570 -7.81072 -6.10482 -4.19897 0.28001 0.92839 2.12631 2.59818 3.14699 3.25816 3.31584 3.33043 3.35403 3.66871 3.90564 4.09177 4.26814 4.39042 4.59637 4.71658 4.88801 5.02604 5.06856 5.15901 5.20397 5.22697 5.38133 5.38620 5.59491 5.65903 5.73243 5.80346 5.84332 6.02934 6.11260 6.13532 6.19440 6.38822 6.44883 6.55078 6.65940 6.74692 7.02971 7.10056 7.20693 7.37283 7.45954 7.62615 7.73250 7.91850 8.12933 8.19195 8.65382 8.79112 9.12380 9.47123 10.94943 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.003063 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.248802 B = 9138.106023 C = 9170.970634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.144 3.856 3 C -0.049 4.049 4 C -0.092 4.092 5 C -0.094 4.094 6 C -0.123 4.123 7 C -0.045 4.045 8 C -0.148 4.148 9 C 0.570 3.430 10 O -0.479 6.479 11 N -0.543 5.543 12 C 0.130 3.870 13 H 0.114 0.886 14 C -0.162 4.162 15 C 0.493 3.507 16 O -0.525 6.525 17 N -0.704 5.704 18 C 0.273 3.727 19 H 0.049 0.951 20 C -0.533 4.533 21 H 0.061 0.939 22 C 0.066 3.934 23 N -0.882 5.882 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.126 4.126 29 C -0.135 4.135 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.387 0.613 40 H 0.264 0.736 41 H 0.031 0.969 42 H 0.099 0.901 43 H 0.022 0.978 44 H 0.049 0.951 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 18.987 -11.845 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.049 3.951 3 C -0.050 4.050 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.141 4.141 7 C -0.064 4.064 8 C -0.151 4.151 9 C 0.359 3.641 10 O -0.352 6.352 11 N -0.267 5.267 12 C 0.024 3.976 13 H 0.132 0.868 14 C -0.220 4.220 15 C 0.275 3.725 16 O -0.402 6.402 17 N -0.353 5.353 18 C 0.171 3.829 19 H 0.067 0.933 20 C -0.571 4.571 21 H 0.079 0.921 22 C -0.137 4.137 23 N -0.519 5.519 24 Si 0.729 3.271 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.165 4.165 29 C -0.193 4.193 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.219 0.781 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.117 0.883 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.113 18.740 -11.044 22.345 hybrid contribution -0.362 -1.277 -0.282 1.357 sum -5.476 17.463 -11.326 21.522 Atomic orbital electron populations 1.23697 0.91643 1.03647 1.05794 1.18489 0.91321 0.84163 1.01159 1.19473 0.93119 0.92856 0.99577 1.20555 0.99887 0.90231 1.00348 1.21245 0.92283 0.99830 0.97884 1.21202 0.97269 0.94930 1.00725 1.20787 0.98617 0.91969 0.95036 1.20656 0.94736 0.94411 1.05297 1.17961 0.82421 0.87709 0.75986 1.90837 1.39077 1.59191 1.46075 1.45327 1.06411 1.04620 1.70306 1.21125 1.00367 0.79567 0.96506 0.86842 1.22122 1.04084 1.00728 0.95068 1.20264 0.82027 0.83506 0.86656 1.90710 1.37506 1.65983 1.45963 1.46406 1.52155 1.09836 1.26911 1.18784 0.94082 0.90518 0.79518 0.93317 1.21214 1.45524 0.90825 0.99585 0.92086 1.24887 0.94780 0.99147 0.94880 1.69897 1.42949 1.35080 1.03997 0.86456 0.78470 0.84533 0.77683 1.20569 1.21091 1.19856 1.21933 0.98197 0.94026 1.02383 1.21824 1.00361 0.98546 0.98558 0.86796 0.85561 0.84987 0.84918 0.84893 0.84758 0.91553 0.90332 0.89973 0.78062 0.92575 0.95033 0.88263 0.95871 0.93229 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.01 14.31 29.11 0.42 -1.59 16 2 C 0.14 1.87 6.73 -82.16 -0.55 1.31 16 3 C -0.05 -0.61 6.28 -104.79 -0.66 -1.27 16 4 C -0.09 -0.83 10.09 -39.37 -0.40 -1.23 16 5 C -0.09 -0.73 10.03 -39.50 -0.40 -1.13 16 6 C -0.12 -1.08 10.02 -39.54 -0.40 -1.47 16 7 C -0.05 -0.54 10.09 -39.28 -0.40 -0.94 16 8 C -0.15 -2.19 6.36 -104.88 -0.67 -2.86 16 9 C 0.57 10.43 6.67 -12.78 -0.09 10.35 16 10 O -0.48 -10.50 15.62 -8.74 -0.14 -10.63 16 11 N -0.54 -8.71 2.44 -107.74 -0.26 -8.97 16 12 C 0.13 2.01 3.20 -69.08 -0.22 1.79 16 13 H 0.11 1.37 6.49 -51.93 -0.34 1.03 16 14 C -0.16 -2.21 9.10 37.16 0.34 -1.87 16 15 C 0.49 10.13 5.46 -10.98 -0.06 10.07 16 16 O -0.53 -13.03 12.06 -8.41 -0.10 -13.13 16 17 N -0.70 -14.69 4.91 -54.93 -0.27 -14.96 16 18 C 0.27 6.97 2.24 -69.08 -0.15 6.81 16 19 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 20 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 22 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 23 N -0.88 -25.08 11.30 55.43 0.63 -24.45 16 24 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 29 C -0.14 -3.11 8.52 37.16 0.32 -2.80 16 30 H 0.11 1.02 6.70 -52.48 -0.35 0.66 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.31 6.87 -51.93 -0.36 0.95 16 38 H 0.08 0.98 7.56 -51.93 -0.39 0.59 16 39 H 0.39 6.84 7.96 -40.82 -0.32 6.52 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 45 H 0.04 0.81 5.64 -51.93 -0.29 0.51 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -34.81 369.13 -9.15 -43.96 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.09 Total: 7.67 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -3.45 Total: -0.85 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.09 Total: -48.38 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.24 Total: -23.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.81 -9.15 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.385 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds