Wall clock time and date at job start Tue Mar 31 2020 15:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33608 * 1 3 3 C 1.47606 * 126.11459 * 2 1 4 4 C 1.38935 * 133.93926 * 0.02569 * 3 2 1 5 5 C 1.38107 * 119.75414 * 180.02562 * 4 3 2 6 6 C 1.38599 * 120.48910 * 359.97438 * 5 4 3 7 7 C 1.37986 * 120.56220 * 359.97438 * 6 5 4 8 8 C 1.39288 * 119.77433 * 0.02562 * 7 6 5 9 9 C 1.47118 * 133.64160 * 179.97438 * 8 7 6 10 10 O 1.21649 * 125.44418 * 359.97438 * 9 8 7 11 11 N 1.34505 * 109.11813 * 179.97438 * 9 8 7 12 12 C 1.46497 * 124.94698 * 179.73871 * 11 9 8 13 13 H 1.08996 * 109.47179 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46771 * 300.02572 * 12 11 9 15 15 C 1.50701 * 109.47064 * 60.02200 * 12 11 9 16 16 O 1.21276 * 119.99848 * 0.02562 * 15 12 11 17 17 N 1.34780 * 119.99727 * 180.02562 * 15 12 11 18 18 C 1.46492 * 119.99834 * 180.02562 * 17 15 12 19 19 H 1.09000 * 109.47046 * 324.99314 * 18 17 15 20 20 C 1.50707 * 109.47294 * 204.99769 * 18 17 15 21 21 H 1.08000 * 119.99300 * 359.97438 * 20 18 17 22 22 C 1.37874 * 120.00210 * 179.97438 * 20 18 17 23 23 N 1.31514 * 120.00089 * 359.97438 * 22 20 18 24 24 Si 1.86803 * 119.99759 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46893 * 90.00052 * 24 22 20 26 26 H 1.48502 * 109.46898 * 209.99761 * 24 22 20 27 27 H 1.48492 * 109.47276 * 329.99731 * 24 22 20 28 28 C 1.53003 * 109.47824 * 84.99431 * 18 17 15 29 29 C 1.53003 * 109.46947 * 295.00140 * 28 18 17 30 30 H 1.08003 * 119.99912 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00484 * 359.97322 * 1 2 3 32 32 H 1.07996 * 120.12508 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.75636 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.71587 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.11223 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46856 * 299.99551 * 14 12 11 37 37 H 1.08996 * 109.47755 * 59.99754 * 14 12 11 38 38 H 1.09002 * 109.47403 * 180.02562 * 14 12 11 39 39 H 0.97003 * 120.00096 * 359.97438 * 17 15 12 40 40 H 0.96996 * 119.99702 * 179.97438 * 23 22 20 41 41 H 1.08997 * 109.46946 * 54.99721 * 28 18 17 42 42 H 1.08995 * 109.47526 * 175.00213 * 28 18 17 43 43 H 1.08993 * 109.47358 * 179.97438 * 29 28 18 44 44 H 1.09007 * 109.46929 * 299.99712 * 29 28 18 45 45 H 1.09002 * 109.46858 * 59.99025 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1924 0.0000 4 6 1.9661 2.5609 0.0004 5 6 3.0287 3.4431 -0.0002 6 6 4.3327 2.9733 -0.0008 7 6 4.5901 1.6177 -0.0002 8 6 3.5313 0.7126 0.0005 9 6 3.4514 -0.7564 0.0007 10 8 4.4026 -1.5147 -0.0001 11 7 2.1584 -1.1272 0.0020 12 6 1.6828 -2.5128 -0.0028 13 1 0.5929 -2.5228 -0.0009 14 6 2.1972 -3.2241 -1.2560 15 6 2.1940 -3.2236 1.2238 16 8 2.8868 -2.6310 2.0235 17 7 1.8810 -4.5179 1.4320 18 6 2.3774 -5.2088 2.6246 19 1 3.3735 -4.8402 2.8698 20 6 2.4420 -6.6904 2.3566 21 1 2.1428 -7.0785 1.3942 22 6 2.8831 -7.5503 3.3399 23 7 3.2480 -7.0776 4.5117 24 14 2.9624 -9.3869 3.0078 25 1 4.2963 -9.7325 2.4542 26 1 2.7453 -10.1290 4.2756 27 1 1.9089 -9.7590 2.0298 28 6 1.4323 -4.9436 3.7983 29 6 1.4623 -3.4550 4.1509 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9353 0.0004 32 1 0.9524 2.9334 0.0013 33 1 2.8422 4.5068 -0.0003 34 1 5.1542 3.6744 -0.0010 35 1 5.6090 1.2597 -0.0011 36 1 1.8275 -2.7099 -2.1431 37 1 3.2872 -3.2141 -1.2580 38 1 1.8430 -4.2550 -1.2599 39 1 1.3265 -4.9918 0.7925 40 1 3.5579 -7.6826 5.2035 41 1 0.4183 -5.2307 3.5202 42 1 1.7517 -5.5278 4.6612 43 1 0.7887 -3.2660 4.9867 44 1 2.4764 -3.1679 4.4290 45 1 1.1430 -2.8707 3.2879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762718929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:37 Heat of formation + Delta-G solvation = -27.126164 kcal Electronic energy + Delta-G solvation = -28388.616027 eV Core-core repulsion = 24564.179456 eV Total energy + Delta-G solvation = -3824.436572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71852 -40.71985 -39.09146 -37.88181 -36.90690 -34.87636 -34.12945 -32.74838 -32.56386 -30.97121 -30.65241 -28.93476 -26.21330 -25.17782 -24.54699 -23.87919 -22.62281 -21.91750 -21.14965 -20.22807 -19.13463 -18.18463 -17.79480 -17.45508 -17.26394 -16.88436 -16.41680 -16.35200 -15.85684 -15.55047 -15.33795 -15.02527 -14.92845 -14.62606 -14.60297 -14.16498 -13.82701 -13.69837 -13.53911 -13.31153 -13.24855 -13.16928 -13.04043 -12.90945 -12.72359 -12.56996 -12.44015 -12.18291 -12.09208 -12.06820 -11.63307 -11.10090 -11.05543 -10.75589 -10.55901 -10.13470 -9.93013 -9.67911 -9.00145 -8.18354 -6.36351 -0.58711 0.16626 1.28730 1.41937 1.43364 1.50100 1.54340 1.74345 2.03800 2.35536 2.60310 2.82922 3.10974 3.11894 3.33707 3.74838 3.83134 3.84656 3.90092 4.14528 4.32519 4.33279 4.42684 4.43867 4.50779 4.58967 4.67246 4.70637 4.75070 4.85483 4.98448 4.99940 5.01355 5.10440 5.19113 5.24009 5.36861 5.38766 5.41867 5.51840 5.58404 5.74332 5.77684 5.87575 5.90395 6.04795 6.13413 6.71632 6.85498 6.98419 7.30622 7.53317 8.87257 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.003063 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.248802 B = 9138.106023 C = 9170.970634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.093 3.907 3 C -0.052 4.052 4 C -0.089 4.089 5 C -0.077 4.077 6 C -0.121 4.121 7 C -0.065 4.065 8 C -0.199 4.199 9 C 0.551 3.449 10 O -0.549 6.549 11 N -0.547 5.547 12 C 0.136 3.864 13 H 0.158 0.842 14 C -0.154 4.154 15 C 0.486 3.514 16 O -0.574 6.574 17 N -0.699 5.699 18 C 0.282 3.718 19 H -0.015 1.015 20 C -0.547 4.547 21 H 0.074 0.926 22 C 0.013 3.987 23 N -0.917 5.917 24 Si 0.972 3.028 25 H -0.282 1.282 26 H -0.283 1.283 27 H -0.256 1.256 28 C -0.117 4.117 29 C -0.119 4.119 30 H 0.127 0.873 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.100 0.900 39 H 0.405 0.595 40 H 0.264 0.736 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.014 0.986 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.318 21.137 -13.560 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.001 3.999 3 C -0.053 4.053 4 C -0.106 4.106 5 C -0.095 4.095 6 C -0.138 4.138 7 C -0.084 4.084 8 C -0.202 4.202 9 C 0.343 3.657 10 O -0.428 6.428 11 N -0.270 5.270 12 C 0.030 3.970 13 H 0.176 0.824 14 C -0.212 4.212 15 C 0.271 3.729 16 O -0.453 6.453 17 N -0.349 5.349 18 C 0.178 3.822 19 H 0.003 0.997 20 C -0.585 4.585 21 H 0.093 0.907 22 C -0.187 4.187 23 N -0.555 5.555 24 Si 0.797 3.203 25 H -0.208 1.208 26 H -0.208 1.208 27 H -0.179 1.179 28 C -0.157 4.157 29 C -0.177 4.177 30 H 0.145 0.855 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.195 0.805 34 H 0.181 0.819 35 H 0.139 0.861 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.119 0.881 39 H 0.241 0.759 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.034 0.966 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.227 20.924 -12.804 26.208 hybrid contribution 0.812 -1.795 0.255 1.986 sum -8.415 19.128 -12.550 24.376 Atomic orbital electron populations 1.24314 0.90189 1.06078 0.99264 1.18878 0.92310 0.83295 1.05461 1.19708 0.91558 0.94307 0.99754 1.21060 1.02240 0.88512 0.98837 1.21822 0.91144 1.01884 0.94624 1.21577 0.99309 0.93518 0.99443 1.20968 0.97737 0.93566 0.96166 1.20674 0.97226 0.92723 1.09594 1.18734 0.82655 0.89296 0.75016 1.90766 1.41022 1.60978 1.49998 1.45407 1.06349 1.05440 1.69760 1.21187 1.02401 0.79459 0.93919 0.82436 1.22098 1.01550 1.02128 0.95464 1.21244 0.80864 0.83079 0.87713 1.90694 1.39414 1.67055 1.48174 1.46127 1.52379 1.10280 1.26095 1.18328 0.91529 0.90549 0.81789 0.99719 1.21578 1.45451 0.91321 1.00154 0.90747 1.25823 0.94272 1.04033 0.94577 1.70066 1.43743 1.36704 1.05011 0.85345 0.78587 0.78562 0.77843 1.20830 1.20817 1.17931 1.21755 0.98485 0.94537 1.00875 1.21639 0.98890 0.97457 0.99688 0.85494 0.81797 0.81081 0.80473 0.81888 0.86072 0.88469 0.94320 0.88141 0.75914 0.92640 0.93258 0.91102 0.93248 0.96639 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 14.31 66.77 0.96 -1.36 16 2 C 0.09 2.25 6.73 39.34 0.26 2.51 16 3 C -0.05 -1.22 6.28 -19.98 -0.13 -1.35 16 4 C -0.09 -1.24 10.09 22.41 0.23 -1.02 16 5 C -0.08 -0.88 10.03 22.33 0.22 -0.65 16 6 C -0.12 -1.90 10.02 22.30 0.22 -1.68 16 7 C -0.07 -1.67 10.09 22.46 0.23 -1.45 16 8 C -0.20 -6.26 6.36 -20.03 -0.13 -6.39 16 9 C 0.55 21.98 6.67 86.62 0.58 22.56 16 10 O -0.55 -27.14 15.62 9.18 0.14 -27.00 16 11 N -0.55 -17.84 2.44 -613.17 -1.50 -19.34 16 12 C 0.14 4.15 3.20 44.25 0.14 4.29 16 13 H 0.16 3.30 6.49 -2.39 -0.02 3.28 16 14 C -0.15 -4.20 9.10 71.98 0.66 -3.54 16 15 C 0.49 20.75 5.46 87.66 0.48 21.23 16 16 O -0.57 -30.62 12.06 10.35 0.12 -30.49 16 17 N -0.70 -29.83 4.91 -446.10 -2.19 -32.02 16 18 C 0.28 15.08 2.24 44.25 0.10 15.18 16 19 H -0.02 -1.00 7.58 -2.39 -0.02 -1.01 16 20 C -0.55 -29.70 8.73 25.60 0.22 -29.48 16 21 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 22 C 0.01 0.71 5.29 84.65 0.45 1.16 16 23 N -0.92 -54.26 11.30 21.45 0.24 -54.02 16 24 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 28 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 29 C -0.12 -5.64 8.52 71.98 0.61 -5.02 16 30 H 0.13 1.54 6.70 -2.91 -0.02 1.52 16 31 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.37 6.87 -2.39 -0.02 1.36 16 38 H 0.10 2.29 7.56 -2.39 -0.02 2.27 16 39 H 0.41 14.07 7.96 -92.71 -0.74 13.33 16 40 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 43 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.01 0.78 7.85 -2.38 -0.02 0.77 16 45 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 Total: -1.00 -87.54 369.13 4.40 -83.15 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.28 Total: 25.41 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.27 Total: 9.21 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.45 Total: -105.37 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: 0.27 Total: -57.49 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -87.54 4.40 -83.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.019 kcal (2) G-P(sol) polarization free energy of solvation -87.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds