Wall clock time and date at job start Tue Mar 31 2020 15:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47376 * 2 1 4 4 H 1.08998 * 109.47355 * 305.00778 * 3 2 1 5 5 C 1.50704 * 109.47398 * 184.99968 * 3 2 1 6 6 H 1.07997 * 119.99746 * 240.00349 * 5 3 2 7 7 C 1.37875 * 119.99607 * 60.00422 * 5 3 2 8 8 N 1.31513 * 120.00012 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99865 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47253 * 89.99633 * 9 7 5 11 11 H 1.48500 * 109.47429 * 209.99602 * 9 7 5 12 12 H 1.48504 * 109.47193 * 329.99844 * 9 7 5 13 13 N 1.46505 * 109.46894 * 65.00190 * 3 2 1 14 14 C 1.34776 * 119.99917 * 274.99753 * 13 3 2 15 15 O 1.21566 * 120.00260 * 0.02562 * 14 13 3 16 16 C 1.47756 * 119.99918 * 179.97438 * 14 13 3 17 17 C 1.39041 * 120.27110 * 353.68700 * 16 14 13 18 18 C 1.40521 * 117.96535 * 179.73744 * 17 16 14 19 19 C 1.40479 * 121.17548 * 180.27757 * 18 17 16 20 20 C 1.36603 * 119.58383 * 180.25637 * 19 18 17 21 21 O 1.35898 * 119.63938 * 180.02562 * 20 19 18 22 22 C 1.42900 * 116.99730 * 180.02562 * 21 20 19 23 23 C 1.39826 * 120.71895 * 359.97438 * 20 19 18 24 24 C 1.36022 * 121.03735 * 0.03834 * 23 20 19 25 25 C 1.40581 * 119.88784 * 359.96407 * 24 23 20 26 26 N 1.33794 * 120.75923 * 180.02562 * 25 24 23 27 27 C 1.30818 * 121.73731 * 179.97438 * 26 25 24 28 28 C 1.50698 * 119.22968 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47449 * 59.99804 * 1 2 3 30 30 H 1.09006 * 109.46952 * 299.99750 * 1 2 3 31 31 H 1.09000 * 109.47367 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47041 * 120.00549 * 2 1 3 33 33 H 1.09006 * 109.46952 * 240.00250 * 2 1 3 34 34 H 0.97007 * 119.99898 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00240 * 95.00067 * 13 3 2 36 36 H 1.07997 * 121.01399 * 359.97438 * 17 16 14 37 37 H 1.07995 * 120.21196 * 0.27831 * 19 18 17 38 38 H 1.09002 * 109.47263 * 59.99918 * 22 21 20 39 39 H 1.09003 * 109.47122 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47450 * 299.99435 * 22 21 20 41 41 H 1.08000 * 119.48324 * 180.02562 * 23 20 19 42 42 H 1.08002 * 120.05720 * 180.02562 * 24 23 20 43 43 H 1.08990 * 109.47497 * 263.29470 * 28 27 26 44 44 H 1.09003 * 109.46811 * 23.29309 * 28 27 26 45 45 H 1.08999 * 109.46977 * 143.28501 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0048 0.8812 -1.3819 10 1 6.5548 -0.3502 -0.7603 11 1 6.3828 0.9223 -2.8174 12 1 6.5569 2.0738 -0.6903 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3670 15 8 -0.3414 2.6319 0.4323 16 6 0.0442 3.3244 2.6298 17 6 0.8720 3.2513 3.7445 18 6 0.4554 3.9015 4.9185 19 6 1.2419 3.8760 6.0822 20 6 0.8030 4.5148 7.2070 21 8 1.5632 4.4913 8.3332 22 6 1.0498 5.1771 9.4769 23 6 -0.4196 5.1934 7.2120 24 6 -1.2030 5.2353 6.1008 25 6 -0.7847 4.5897 4.9241 26 7 -1.5412 4.6202 3.8210 27 6 -1.1705 4.0266 2.7157 28 6 -2.0665 4.0975 1.5061 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.8292 -0.0618 -2.9496 35 1 2.2720 2.1230 1.9979 36 1 1.8085 2.7146 3.7079 37 1 2.1879 3.3550 6.0874 38 1 0.0914 4.7425 9.7613 39 1 1.7528 5.0807 10.3043 40 1 0.9137 6.2318 9.2374 41 1 -0.7471 5.6919 8.1123 42 1 -2.1442 5.7644 6.1221 43 1 -2.6761 3.1956 1.4521 44 1 -2.7150 4.9701 1.5850 45 1 -1.4566 4.1784 0.6064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762718957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:08 Heat of formation + Delta-G solvation = -21.852688 kcal Electronic energy + Delta-G solvation = -27520.871753 eV Core-core repulsion = 23696.663857 eV Total energy + Delta-G solvation = -3824.207897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17403 -39.79198 -38.69921 -36.29893 -35.09002 -33.82833 -32.40159 -31.40481 -31.15304 -30.17834 -28.10188 -26.96317 -26.86457 -24.58309 -23.08418 -22.60725 -22.09164 -20.84524 -19.47535 -18.72061 -18.13509 -17.35768 -16.77227 -16.08119 -15.80655 -15.64962 -15.20855 -14.93589 -14.78434 -14.38947 -14.13582 -13.89591 -13.67119 -13.33101 -13.17314 -12.87830 -12.73934 -12.69348 -12.23942 -12.09318 -12.00089 -11.80420 -11.51181 -11.34563 -11.27643 -10.99892 -10.84694 -10.68176 -10.47352 -10.32622 -10.22025 -9.71950 -9.64679 -9.08940 -8.90563 -8.72983 -8.53969 -8.00516 -7.87439 -6.15736 -4.25428 0.13452 0.64273 1.76848 2.58234 2.95027 3.22496 3.29891 3.31640 3.57966 3.87450 4.11012 4.17726 4.33888 4.38903 4.52944 4.63587 4.74052 4.78350 4.78783 4.89877 5.02965 5.11183 5.15990 5.46006 5.51752 5.62733 5.74362 5.78421 5.88602 5.98513 6.03016 6.14916 6.31729 6.36992 6.39640 6.44280 6.62216 6.74308 7.01575 7.04626 7.16151 7.31407 7.37943 7.57524 7.67346 7.85364 7.92378 8.13875 8.56167 8.71847 9.00789 9.41790 10.89492 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.003134 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.731024 B = 8933.194909 C =10471.552685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.698 5.698 14 C 0.546 3.454 15 O -0.531 6.531 16 C -0.161 4.161 17 C -0.030 4.030 18 C -0.078 4.078 19 C -0.131 4.131 20 C 0.116 3.884 21 O -0.316 6.316 22 C 0.026 3.974 23 C -0.168 4.168 24 C -0.059 4.059 25 C 0.116 3.884 26 N -0.479 5.479 27 C 0.202 3.798 28 C -0.109 4.109 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.265 0.735 35 H 0.387 0.613 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 8.441 19.601 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.331 3.669 15 O -0.411 6.411 16 C -0.167 4.167 17 C -0.057 4.057 18 C -0.080 4.080 19 C -0.151 4.151 20 C 0.071 3.929 21 O -0.230 6.230 22 C -0.069 4.069 23 C -0.189 4.189 24 C -0.077 4.077 25 C -0.005 4.005 26 N -0.188 5.188 27 C 0.049 3.951 28 C -0.166 4.166 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.698 8.693 18.876 22.162 hybrid contribution 1.991 -0.377 0.570 2.105 sum -5.707 8.316 19.446 21.906 Atomic orbital electron populations 1.21847 0.98256 0.98154 1.01260 1.21943 0.92697 0.99644 1.02377 1.18854 0.94326 0.89233 0.80634 0.92944 1.21212 0.90615 1.39236 1.06391 0.92090 1.24868 0.98617 0.94743 0.95334 1.69888 1.35153 1.37430 1.09351 0.86460 0.84841 0.78468 0.77424 1.20529 1.21051 1.19844 1.46501 1.14182 1.55187 1.18722 1.17843 0.83190 0.79554 0.86362 1.90705 1.51066 1.59411 1.39945 1.21228 0.97002 1.02481 0.95967 1.21983 0.98566 0.94467 0.90699 1.18417 0.95617 0.99702 0.94305 1.20137 1.01450 1.03385 0.90098 1.18596 0.90555 0.96673 0.87062 1.86110 1.45850 1.71910 1.19085 1.23075 1.00636 0.96458 0.86737 1.21095 0.94953 1.02791 1.00013 1.20628 0.99662 0.97279 0.90147 1.18916 0.91064 0.97264 0.93305 1.67833 1.32586 1.19794 0.98563 1.21592 0.91310 0.88708 0.93495 1.21101 0.98595 1.02387 0.94468 0.92986 0.94308 0.95826 0.95028 0.88166 0.92506 0.78015 0.83547 0.84218 0.92592 0.88167 0.92589 0.84696 0.84223 0.89929 0.91748 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.01 5.45 -26.74 -0.15 -3.16 16 3 C 0.27 6.55 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.49 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.21 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.70 -13.96 4.97 -55.91 -0.28 -14.23 16 14 C 0.55 10.52 6.26 -12.37 -0.08 10.45 16 15 O -0.53 -11.37 10.43 5.31 0.06 -11.32 16 16 C -0.16 -2.66 5.89 -104.83 -0.62 -3.27 16 17 C -0.03 -0.43 9.38 -38.42 -0.36 -0.79 16 18 C -0.08 -1.06 5.74 -106.82 -0.61 -1.68 16 19 C -0.13 -1.55 9.69 -39.33 -0.38 -1.93 16 20 C 0.12 1.25 6.64 -39.58 -0.26 0.99 16 21 O -0.32 -3.09 10.47 -19.42 -0.20 -3.29 16 22 C 0.03 0.14 9.80 101.05 0.99 1.13 16 23 C -0.17 -1.58 8.94 -39.78 -0.36 -1.93 16 24 C -0.06 -0.65 9.96 -39.49 -0.39 -1.04 16 25 C 0.12 1.64 6.61 -84.76 -0.56 1.08 16 26 N -0.48 -7.42 10.20 -6.92 -0.07 -7.49 16 27 C 0.20 3.26 6.82 -82.15 -0.56 2.70 16 28 C -0.11 -1.64 8.82 36.00 0.32 -1.32 16 29 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 30 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.39 6.73 6.65 -40.82 -0.27 6.46 16 36 H 0.15 1.75 6.53 -52.49 -0.34 1.41 16 37 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.06 0.25 7.64 -51.93 -0.40 -0.15 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.25 7.63 -51.93 -0.40 -0.14 16 41 H 0.14 0.84 6.22 -52.49 -0.33 0.51 16 42 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.11 1.83 5.81 -51.93 -0.30 1.53 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -30.07 363.35 -8.61 -38.68 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.94 Total: 7.84 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.25 Total: -7.39 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.28 Total: -45.21 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.15 Total: -14.61 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.07 -8.61 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.827 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds