Wall clock time and date at job start Tue Mar 31 2020 15:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47376 * 2 1 4 4 H 1.08998 * 109.47355 * 305.00778 * 3 2 1 5 5 C 1.50704 * 109.47398 * 184.99968 * 3 2 1 6 6 H 1.07997 * 119.99746 * 240.00349 * 5 3 2 7 7 C 1.37875 * 119.99607 * 60.00422 * 5 3 2 8 8 N 1.31513 * 120.00012 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99865 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47253 * 89.99633 * 9 7 5 11 11 H 1.48500 * 109.47429 * 209.99602 * 9 7 5 12 12 H 1.48504 * 109.47193 * 329.99844 * 9 7 5 13 13 N 1.46505 * 109.46894 * 65.00190 * 3 2 1 14 14 C 1.34776 * 119.99917 * 274.99753 * 13 3 2 15 15 O 1.21566 * 120.00260 * 0.02562 * 14 13 3 16 16 C 1.47756 * 119.99918 * 179.97438 * 14 13 3 17 17 C 1.39041 * 120.27110 * 353.68700 * 16 14 13 18 18 C 1.40521 * 117.96535 * 179.73744 * 17 16 14 19 19 C 1.40479 * 121.17548 * 180.27757 * 18 17 16 20 20 C 1.36603 * 119.58383 * 180.25637 * 19 18 17 21 21 O 1.35898 * 119.63938 * 180.02562 * 20 19 18 22 22 C 1.42900 * 116.99730 * 180.02562 * 21 20 19 23 23 C 1.39826 * 120.71895 * 359.97438 * 20 19 18 24 24 C 1.36022 * 121.03735 * 0.03834 * 23 20 19 25 25 C 1.40581 * 119.88784 * 359.96407 * 24 23 20 26 26 N 1.33794 * 120.75923 * 180.02562 * 25 24 23 27 27 C 1.30818 * 121.73731 * 179.97438 * 26 25 24 28 28 C 1.50698 * 119.22968 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47449 * 59.99804 * 1 2 3 30 30 H 1.09006 * 109.46952 * 299.99750 * 1 2 3 31 31 H 1.09000 * 109.47367 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47041 * 120.00549 * 2 1 3 33 33 H 1.09006 * 109.46952 * 240.00250 * 2 1 3 34 34 H 0.97007 * 119.99898 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00240 * 95.00067 * 13 3 2 36 36 H 1.07997 * 121.01399 * 359.97438 * 17 16 14 37 37 H 1.07995 * 120.21196 * 0.27831 * 19 18 17 38 38 H 1.09002 * 109.47263 * 59.99918 * 22 21 20 39 39 H 1.09003 * 109.47122 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47450 * 299.99435 * 22 21 20 41 41 H 1.08000 * 119.48324 * 180.02562 * 23 20 19 42 42 H 1.08002 * 120.05720 * 180.02562 * 24 23 20 43 43 H 1.08990 * 109.47497 * 263.29470 * 28 27 26 44 44 H 1.09003 * 109.46811 * 23.29309 * 28 27 26 45 45 H 1.08999 * 109.46977 * 143.28501 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0048 0.8812 -1.3819 10 1 6.5548 -0.3502 -0.7603 11 1 6.3828 0.9223 -2.8174 12 1 6.5569 2.0738 -0.6903 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3670 15 8 -0.3414 2.6319 0.4323 16 6 0.0442 3.3244 2.6298 17 6 0.8720 3.2513 3.7445 18 6 0.4554 3.9015 4.9185 19 6 1.2419 3.8760 6.0822 20 6 0.8030 4.5148 7.2070 21 8 1.5632 4.4913 8.3332 22 6 1.0498 5.1771 9.4769 23 6 -0.4196 5.1934 7.2120 24 6 -1.2030 5.2353 6.1008 25 6 -0.7847 4.5897 4.9241 26 7 -1.5412 4.6202 3.8210 27 6 -1.1705 4.0266 2.7157 28 6 -2.0665 4.0975 1.5061 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.8292 -0.0618 -2.9496 35 1 2.2720 2.1230 1.9979 36 1 1.8085 2.7146 3.7079 37 1 2.1879 3.3550 6.0874 38 1 0.0914 4.7425 9.7613 39 1 1.7528 5.0807 10.3043 40 1 0.9137 6.2318 9.2374 41 1 -0.7471 5.6919 8.1123 42 1 -2.1442 5.7644 6.1221 43 1 -2.6761 3.1956 1.4521 44 1 -2.7150 4.9701 1.5850 45 1 -1.4566 4.1784 0.6064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762718957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:06 Heat of formation + Delta-G solvation = -40.091596 kcal Electronic energy + Delta-G solvation = -27521.662652 eV Core-core repulsion = 23696.663857 eV Total energy + Delta-G solvation = -3824.998795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.21583 -40.90231 -39.91460 -37.41576 -36.71244 -35.04150 -34.13041 -32.84224 -32.40701 -31.30901 -29.22434 -28.52342 -27.69625 -25.79485 -24.86863 -23.55445 -23.18379 -22.34894 -21.23169 -19.89472 -19.05320 -18.74208 -17.87693 -17.40844 -17.10124 -16.72999 -16.54393 -16.43074 -15.87918 -15.64041 -15.44311 -15.17459 -14.59704 -14.55247 -14.52668 -14.20539 -13.96921 -13.77444 -13.57559 -13.45888 -13.20405 -13.14849 -12.90118 -12.78386 -12.75923 -12.63713 -12.14619 -12.08598 -12.03399 -11.67919 -11.53590 -11.41612 -11.07029 -10.89238 -10.53720 -10.35443 -9.83276 -9.55228 -8.91269 -8.15106 -6.32038 -0.88527 -0.39901 0.77487 1.45577 1.46486 1.52489 1.56437 2.25002 2.27431 2.35104 2.54187 2.98735 3.14421 3.15397 3.49462 3.55246 3.64118 3.76636 3.87559 4.03993 4.30931 4.40754 4.45631 4.51572 4.53807 4.59870 4.62361 4.71274 4.77322 4.79031 4.80936 4.85726 4.91681 5.07562 5.09492 5.15360 5.26424 5.29581 5.40074 5.45654 5.55263 5.60497 5.65801 5.80871 5.92104 6.18040 6.33459 6.74461 6.79423 6.92895 7.32750 7.50160 8.90093 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.003134 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.731024 B = 8933.194909 C =10471.552685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.698 5.698 14 C 0.547 3.453 15 O -0.559 6.559 16 C -0.184 4.184 17 C -0.018 4.018 18 C -0.087 4.087 19 C -0.146 4.146 20 C 0.123 3.877 21 O -0.329 6.329 22 C 0.013 3.987 23 C -0.148 4.148 24 C -0.066 4.066 25 C 0.097 3.903 26 N -0.485 5.485 27 C 0.185 3.815 28 C -0.100 4.100 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.400 0.600 36 H 0.165 0.835 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.174 0.826 42 H 0.159 0.841 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 9.430 23.430 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.347 5.347 14 C 0.334 3.666 15 O -0.440 6.440 16 C -0.190 4.190 17 C -0.045 4.045 18 C -0.089 4.089 19 C -0.165 4.165 20 C 0.078 3.922 21 O -0.243 6.243 22 C -0.081 4.081 23 C -0.168 4.168 24 C -0.084 4.084 25 C -0.025 4.025 26 N -0.194 5.194 27 C 0.032 3.968 28 C -0.157 4.157 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.191 0.809 42 H 0.177 0.823 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.015 9.698 22.752 25.709 hybrid contribution 1.767 -0.577 -0.341 1.890 sum -5.248 9.121 22.411 24.759 Atomic orbital electron populations 1.21682 0.96879 0.99143 1.00396 1.21791 0.93836 0.99041 1.01328 1.18421 0.93663 0.89193 0.80971 0.97655 1.21561 0.91411 1.39012 1.06721 0.91130 1.25713 1.03082 0.94400 0.95028 1.70038 1.36964 1.38239 1.09862 0.85414 0.79398 0.78821 0.77124 1.19711 1.21323 1.19014 1.46217 1.15018 1.55566 1.17859 1.18231 0.82386 0.78822 0.87136 1.90693 1.51750 1.60240 1.41322 1.20874 0.98359 1.04511 0.95216 1.22195 0.98509 0.93577 0.90194 1.18521 0.95926 0.99825 0.94654 1.20253 1.01915 1.04309 0.90061 1.18760 0.90789 0.95501 0.87185 1.86114 1.46258 1.72318 1.19614 1.23449 1.01962 0.97055 0.85667 1.21480 0.93617 1.01040 1.00686 1.20882 1.00808 0.97296 0.89441 1.19401 0.91359 0.97874 0.93854 1.67829 1.33037 1.19761 0.98768 1.21598 0.91537 0.89626 0.94076 1.20944 0.98319 1.02912 0.93519 0.95027 0.93941 0.93769 0.94194 0.90837 0.92586 0.76455 0.81802 0.83157 0.91101 0.86392 0.91135 0.80869 0.82327 0.90263 0.90198 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.70 16 3 C 0.28 14.09 2.24 44.24 0.10 14.19 16 4 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 5 C -0.55 -28.53 8.73 25.60 0.22 -28.31 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -51.47 11.29 21.45 0.24 -51.22 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 13 N -0.70 -28.60 4.97 -449.06 -2.23 -30.83 16 14 C 0.55 21.93 6.26 86.76 0.54 22.48 16 15 O -0.56 -25.32 10.43 -3.92 -0.04 -25.36 16 16 C -0.18 -6.19 5.89 -20.00 -0.12 -6.30 16 17 C -0.02 -0.51 9.38 23.02 0.22 -0.29 16 18 C -0.09 -2.25 5.74 -21.29 -0.12 -2.38 16 19 C -0.15 -3.12 9.69 22.43 0.22 -2.90 16 20 C 0.12 2.24 6.64 22.27 0.15 2.39 16 21 O -0.33 -5.23 10.47 -92.40 -0.97 -6.20 16 22 C 0.01 0.08 9.80 113.37 1.11 1.19 16 23 C -0.15 -2.18 8.94 22.14 0.20 -1.98 16 24 C -0.07 -1.26 9.96 22.33 0.22 -1.04 16 25 C 0.10 2.59 6.61 40.30 0.27 2.86 16 26 N -0.48 -14.82 10.20 -175.79 -1.79 -16.61 16 27 C 0.18 6.08 6.82 43.28 0.30 6.38 16 28 C -0.10 -3.15 8.82 71.24 0.63 -2.52 16 29 H 0.03 1.49 7.84 -2.39 -0.02 1.48 16 30 H 0.04 1.83 5.64 -2.38 -0.01 1.82 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 3.99 5.95 -2.38 -0.01 3.98 16 34 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 35 H 0.40 13.95 6.65 -92.71 -0.62 13.33 16 36 H 0.16 3.76 6.53 -2.91 -0.02 3.74 16 37 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.07 0.29 7.64 -2.39 -0.02 0.27 16 39 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.29 7.63 -2.39 -0.02 0.28 16 41 H 0.17 1.18 6.22 -2.91 -0.02 1.16 16 42 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 43 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.09 3.12 5.81 -2.39 -0.01 3.11 16 Total: -1.00 -67.41 363.35 2.81 -64.61 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.42 Total: 27.38 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.16 Total: -5.41 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -3.78 Total: -98.66 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.01 Total: -31.55 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -67.41 2.81 -64.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.514 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds