Wall clock time and date at job start Tue Mar 31 2020 15:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47041 * 2 1 4 4 H 1.08998 * 109.47000 * 55.00396 * 3 2 1 5 5 C 1.50704 * 109.46820 * 175.00030 * 3 2 1 6 6 H 1.08000 * 119.99931 * 120.00174 * 5 3 2 7 7 C 1.37876 * 120.00235 * 299.99633 * 5 3 2 8 8 N 1.31516 * 120.00274 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99924 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47026 * 89.99772 * 9 7 5 11 11 H 1.48498 * 109.47456 * 209.99892 * 9 7 5 12 12 H 1.48503 * 109.47181 * 330.00151 * 9 7 5 13 13 N 1.46493 * 109.47058 * 294.99742 * 3 2 1 14 14 C 1.34783 * 119.99544 * 85.00389 * 13 3 2 15 15 O 1.21562 * 120.00149 * 359.97438 * 14 13 3 16 16 C 1.47761 * 119.99649 * 180.02562 * 14 13 3 17 17 C 1.39041 * 120.27190 * 6.30225 * 16 14 13 18 18 C 1.40517 * 117.96349 * 179.97438 * 17 16 14 19 19 C 1.40478 * 121.16962 * 180.02562 * 18 17 16 20 20 C 1.36598 * 119.58536 * 179.97438 * 19 18 17 21 21 O 1.35894 * 119.64422 * 180.02562 * 20 19 18 22 22 C 1.42898 * 117.00341 * 180.02562 * 21 20 19 23 23 C 1.39831 * 120.71809 * 359.75213 * 20 19 18 24 24 C 1.36027 * 121.03445 * 0.51241 * 23 20 19 25 25 C 1.40581 * 119.88798 * 359.48879 * 24 23 20 26 26 N 1.33800 * 120.76551 * 180.27784 * 25 24 23 27 27 C 1.30814 * 121.73712 * 179.97438 * 26 25 24 28 28 C 1.50700 * 119.22596 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46904 * 299.99735 * 1 2 3 31 31 H 1.08991 * 109.46954 * 59.99830 * 1 2 3 32 32 H 1.09003 * 109.47356 * 240.00076 * 2 1 3 33 33 H 1.09003 * 109.47348 * 119.99588 * 2 1 3 34 34 H 0.96998 * 119.99651 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00365 * 265.00238 * 13 3 2 36 36 H 1.07998 * 121.01590 * 0.02562 * 17 16 14 37 37 H 1.07994 * 120.20756 * 359.97438 * 19 18 17 38 38 H 1.08995 * 109.47507 * 59.99792 * 22 21 20 39 39 H 1.09002 * 109.47201 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.46894 * 299.99426 * 22 21 20 41 41 H 1.08000 * 119.48411 * 180.25504 * 23 20 19 42 42 H 1.07999 * 120.05343 * 179.77467 * 24 23 20 43 43 H 1.08996 * 109.47158 * 96.67740 * 28 27 26 44 44 H 1.08993 * 109.47155 * 216.68525 * 28 27 26 45 45 H 1.09002 * 109.46976 * 336.68073 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8804 1.3363 9 14 3.0964 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7877 0.8074 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6319 -0.4321 16 6 0.0440 3.3245 -2.6297 17 6 0.8720 3.2517 -3.7443 18 6 0.4523 3.8966 -4.9201 19 6 1.2359 3.8657 -6.0856 20 6 0.7964 4.5034 -7.2108 21 8 1.5531 4.4739 -8.3391 22 6 1.0399 5.1599 -9.4828 23 6 -0.4265 5.1816 -7.2160 24 6 -1.2044 5.2334 -6.1013 25 6 -0.7855 4.5890 -4.9242 26 7 -1.5394 4.6240 -3.8193 27 6 -1.1684 4.0307 -2.7140 28 6 -2.0620 4.1059 -1.5029 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8770 0.4820 2.1129 35 1 2.2719 2.1231 -1.9978 36 1 1.8085 2.7151 -3.7077 37 1 2.1798 3.3410 -6.0920 38 1 0.9097 6.2157 -9.2451 39 1 1.7400 5.0582 -10.3120 40 1 0.0786 4.7295 -9.7636 41 1 -0.7566 5.6755 -8.1179 42 1 -2.1444 5.7648 -6.1219 43 1 -2.6745 3.2060 -1.4469 44 1 -1.4502 4.1855 -0.6044 45 1 -2.7077 4.9805 -1.5815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762718960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:14 Heat of formation + Delta-G solvation = -13.577709 kcal Electronic energy + Delta-G solvation = -27601.756722 eV Core-core repulsion = 23777.907655 eV Total energy + Delta-G solvation = -3823.849067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22866 -39.87603 -38.84864 -36.38918 -35.33004 -33.89938 -32.41732 -31.68729 -31.40765 -30.33329 -28.20452 -27.36747 -26.95571 -24.66950 -22.81795 -22.63418 -22.15854 -21.22274 -19.77574 -18.80553 -18.19866 -17.44113 -16.81823 -16.22066 -16.09689 -15.69624 -15.47836 -14.96795 -14.85772 -14.53538 -14.20053 -13.95492 -13.72018 -13.40979 -13.28279 -13.05407 -12.91963 -12.75634 -12.39027 -12.30121 -12.06406 -12.03693 -11.86219 -11.71096 -11.37529 -11.12543 -10.89974 -10.73999 -10.65537 -10.51430 -9.96189 -9.79742 -9.55328 -9.26984 -9.04246 -8.81669 -8.76313 -8.12770 -8.03063 -6.24156 -4.27338 0.08299 0.59467 1.72018 2.52731 2.93285 3.21422 3.33826 3.37851 3.45789 3.72926 4.02985 4.12413 4.28668 4.35467 4.48864 4.59002 4.68307 4.76402 4.77936 4.83094 4.97895 5.09407 5.10539 5.37317 5.46312 5.57461 5.68437 5.74211 5.82219 5.93528 5.95270 5.95837 5.99885 6.08791 6.14356 6.27575 6.33325 6.60063 6.66382 6.68535 6.80064 6.91987 7.02483 7.19368 7.24685 7.45426 7.85910 8.07570 8.43807 8.69929 8.81408 9.35926 10.87792 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.003086 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.066522 B = 9071.023677 C =10304.873831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.691 5.691 14 C 0.549 3.451 15 O -0.533 6.533 16 C -0.164 4.164 17 C -0.027 4.027 18 C -0.078 4.078 19 C -0.131 4.131 20 C 0.117 3.883 21 O -0.315 6.315 22 C 0.026 3.974 23 C -0.167 4.167 24 C -0.059 4.059 25 C 0.118 3.882 26 N -0.478 5.478 27 C 0.202 3.798 28 C -0.109 4.109 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.268 0.732 35 H 0.393 0.607 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 7.528 -18.593 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.339 5.339 14 C 0.334 3.666 15 O -0.413 6.413 16 C -0.170 4.170 17 C -0.054 4.054 18 C -0.081 4.081 19 C -0.150 4.150 20 C 0.072 3.928 21 O -0.229 6.229 22 C -0.069 4.069 23 C -0.187 4.187 24 C -0.078 4.078 25 C -0.004 4.004 26 N -0.187 5.187 27 C 0.049 3.951 28 C -0.165 4.165 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.573 7.833 -17.957 23.278 hybrid contribution 0.660 -0.829 0.068 1.062 sum -11.912 7.004 -17.888 22.604 Atomic orbital electron populations 1.21882 0.96845 0.99149 1.02298 1.22296 0.94448 0.99813 1.01216 1.19209 0.95762 0.88546 0.82483 0.92961 1.21028 0.88505 1.40027 1.07965 0.90190 1.24828 0.94871 0.95088 0.97653 1.69865 1.08710 1.44329 1.29839 0.86904 0.80991 0.79971 0.80888 1.20224 1.22162 1.18345 1.46153 1.14429 1.55190 1.18155 1.17872 0.82910 0.79297 0.86502 1.90701 1.51163 1.59444 1.40004 1.21109 0.97216 1.02896 0.95740 1.22006 0.98445 0.94250 0.90662 1.18413 0.95636 0.99732 0.94277 1.20150 1.01500 1.03308 0.90058 1.18602 0.90546 0.96592 0.87061 1.86114 1.46107 1.71742 1.18924 1.23082 1.00636 0.96467 0.86740 1.21114 0.94938 1.02688 0.99968 1.20629 0.99724 0.97331 0.90103 1.18919 0.91085 0.97140 0.93279 1.67835 1.32514 1.19827 0.98522 1.21563 0.91255 0.88747 0.93541 1.21094 0.98636 1.02430 0.94385 0.94940 0.92707 0.92944 0.92272 0.92653 0.92229 0.77243 0.83411 0.84108 0.92567 0.88120 0.92591 0.84646 0.84193 0.89956 0.87372 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.51 37.16 0.32 -2.48 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.13 16 3 C 0.24 5.54 1.83 -69.08 -0.13 5.41 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -14.11 9.31 -34.44 -0.32 -14.43 16 6 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 9 Si 0.88 21.29 24.41 -169.99 -4.15 17.14 16 10 H -0.28 -6.45 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.14 6.53 56.52 0.37 -5.77 16 13 N -0.69 -13.17 4.97 -55.90 -0.28 -13.45 16 14 C 0.55 9.98 6.26 -12.36 -0.08 9.90 16 15 O -0.53 -10.65 10.44 5.31 0.06 -10.59 16 16 C -0.16 -2.57 5.89 -104.83 -0.62 -3.19 16 17 C -0.03 -0.37 9.38 -38.43 -0.36 -0.73 16 18 C -0.08 -1.03 5.74 -106.82 -0.61 -1.65 16 19 C -0.13 -1.51 9.68 -39.33 -0.38 -1.89 16 20 C 0.12 1.23 6.64 -39.58 -0.26 0.97 16 21 O -0.32 -3.04 10.47 -19.41 -0.20 -3.24 16 22 C 0.03 0.14 9.80 101.05 0.99 1.13 16 23 C -0.17 -1.52 8.94 -39.78 -0.36 -1.87 16 24 C -0.06 -0.63 9.96 -39.49 -0.39 -1.03 16 25 C 0.12 1.60 6.61 -84.75 -0.56 1.04 16 26 N -0.48 -7.14 10.20 -6.92 -0.07 -7.21 16 27 C 0.20 3.12 6.82 -82.15 -0.56 2.56 16 28 C -0.11 -1.54 8.82 36.01 0.32 -1.23 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 31 H 0.05 1.00 5.64 -51.93 -0.29 0.70 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.26 3.21 -51.93 -0.17 1.09 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.39 6.63 6.65 -40.82 -0.27 6.36 16 36 H 0.15 1.70 6.53 -52.49 -0.34 1.36 16 37 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.24 7.62 -51.93 -0.40 -0.16 16 41 H 0.14 0.81 6.22 -52.49 -0.33 0.48 16 42 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.11 1.71 5.81 -51.93 -0.30 1.40 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -31.34 356.59 -7.54 -38.89 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.81 Total: 6.82 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.24 Total: -8.52 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.43 Total: -45.86 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.15 Total: -13.83 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.15 Total: 17.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.34 -7.54 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.309 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds