Wall clock time and date at job start Tue Mar 31 2020 15:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47041 * 2 1 4 4 H 1.08998 * 109.47000 * 55.00396 * 3 2 1 5 5 C 1.50704 * 109.46820 * 175.00030 * 3 2 1 6 6 H 1.08000 * 119.99931 * 120.00174 * 5 3 2 7 7 C 1.37876 * 120.00235 * 299.99633 * 5 3 2 8 8 N 1.31516 * 120.00274 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99924 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47026 * 89.99772 * 9 7 5 11 11 H 1.48498 * 109.47456 * 209.99892 * 9 7 5 12 12 H 1.48503 * 109.47181 * 330.00151 * 9 7 5 13 13 N 1.46493 * 109.47058 * 294.99742 * 3 2 1 14 14 C 1.34783 * 119.99544 * 85.00389 * 13 3 2 15 15 O 1.21562 * 120.00149 * 359.97438 * 14 13 3 16 16 C 1.47761 * 119.99649 * 180.02562 * 14 13 3 17 17 C 1.39041 * 120.27190 * 6.30225 * 16 14 13 18 18 C 1.40517 * 117.96349 * 179.97438 * 17 16 14 19 19 C 1.40478 * 121.16962 * 180.02562 * 18 17 16 20 20 C 1.36598 * 119.58536 * 179.97438 * 19 18 17 21 21 O 1.35894 * 119.64422 * 180.02562 * 20 19 18 22 22 C 1.42898 * 117.00341 * 180.02562 * 21 20 19 23 23 C 1.39831 * 120.71809 * 359.75213 * 20 19 18 24 24 C 1.36027 * 121.03445 * 0.51241 * 23 20 19 25 25 C 1.40581 * 119.88798 * 359.48879 * 24 23 20 26 26 N 1.33800 * 120.76551 * 180.27784 * 25 24 23 27 27 C 1.30814 * 121.73712 * 179.97438 * 26 25 24 28 28 C 1.50700 * 119.22596 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46904 * 299.99735 * 1 2 3 31 31 H 1.08991 * 109.46954 * 59.99830 * 1 2 3 32 32 H 1.09003 * 109.47356 * 240.00076 * 2 1 3 33 33 H 1.09003 * 109.47348 * 119.99588 * 2 1 3 34 34 H 0.96998 * 119.99651 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00365 * 265.00238 * 13 3 2 36 36 H 1.07998 * 121.01590 * 0.02562 * 17 16 14 37 37 H 1.07994 * 120.20756 * 359.97438 * 19 18 17 38 38 H 1.08995 * 109.47507 * 59.99792 * 22 21 20 39 39 H 1.09002 * 109.47201 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.46894 * 299.99426 * 22 21 20 41 41 H 1.08000 * 119.48411 * 180.25504 * 23 20 19 42 42 H 1.07999 * 120.05343 * 179.77467 * 24 23 20 43 43 H 1.08996 * 109.47158 * 96.67740 * 28 27 26 44 44 H 1.08993 * 109.47155 * 216.68525 * 28 27 26 45 45 H 1.09002 * 109.46976 * 336.68073 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8804 1.3363 9 14 3.0964 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7877 0.8074 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6319 -0.4321 16 6 0.0440 3.3245 -2.6297 17 6 0.8720 3.2517 -3.7443 18 6 0.4523 3.8966 -4.9201 19 6 1.2359 3.8657 -6.0856 20 6 0.7964 4.5034 -7.2108 21 8 1.5531 4.4739 -8.3391 22 6 1.0399 5.1599 -9.4828 23 6 -0.4265 5.1816 -7.2160 24 6 -1.2044 5.2334 -6.1013 25 6 -0.7855 4.5890 -4.9242 26 7 -1.5394 4.6240 -3.8193 27 6 -1.1684 4.0307 -2.7140 28 6 -2.0620 4.1059 -1.5029 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8770 0.4820 2.1129 35 1 2.2719 2.1231 -1.9978 36 1 1.8085 2.7151 -3.7077 37 1 2.1798 3.3410 -6.0920 38 1 0.9097 6.2157 -9.2451 39 1 1.7400 5.0582 -10.3120 40 1 0.0786 4.7295 -9.7636 41 1 -0.7566 5.6755 -8.1179 42 1 -2.1444 5.7648 -6.1219 43 1 -2.6745 3.2060 -1.4469 44 1 -1.4502 4.1855 -0.6044 45 1 -2.7077 4.9805 -1.5815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762718960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:12 Heat of formation + Delta-G solvation = -34.244350 kcal Electronic energy + Delta-G solvation = -27602.652894 eV Core-core repulsion = 23777.907655 eV Total energy + Delta-G solvation = -3824.745239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.23908 -40.97425 -39.97235 -37.52302 -36.79997 -35.05572 -34.28914 -33.18852 -32.43385 -31.35328 -29.52349 -28.70241 -27.70322 -25.79320 -24.57527 -23.57101 -23.25625 -22.60816 -21.38435 -19.98577 -19.09287 -18.84924 -18.00054 -17.70439 -17.18581 -16.75589 -16.69669 -16.37245 -15.95391 -15.65465 -15.51795 -15.22269 -14.96101 -14.57305 -14.52702 -14.24586 -14.09275 -13.92037 -13.71708 -13.62638 -13.58226 -13.18761 -12.94582 -12.81631 -12.77044 -12.70767 -12.38930 -12.06981 -11.84372 -11.67300 -11.42400 -11.34520 -11.24065 -10.94048 -10.85435 -10.40425 -9.89632 -9.64718 -8.92135 -8.37188 -6.43082 -0.90407 -0.40622 0.75978 1.28929 1.37212 1.46725 1.50021 2.20204 2.24550 2.27293 2.35523 2.96739 2.99693 3.14029 3.48072 3.52062 3.62277 3.74459 3.86349 4.00151 4.24999 4.28165 4.34517 4.39888 4.45140 4.48885 4.52706 4.61286 4.70265 4.77536 4.81585 4.85587 4.86020 4.91431 5.02351 5.08042 5.13488 5.14859 5.24565 5.25978 5.38952 5.42360 5.52982 5.60042 5.66487 6.13330 6.32991 6.58150 6.75923 6.83944 7.18328 7.36519 8.77924 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.003086 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.066522 B = 9071.023677 C =10304.873831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.252 3.748 4 H 0.030 0.970 5 C -0.534 4.534 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.255 1.255 13 N -0.694 5.694 14 C 0.553 3.447 15 O -0.553 6.553 16 C -0.185 4.185 17 C -0.018 4.018 18 C -0.088 4.088 19 C -0.147 4.147 20 C 0.123 3.877 21 O -0.330 6.330 22 C 0.013 3.987 23 C -0.148 4.148 24 C -0.066 4.066 25 C 0.099 3.901 26 N -0.485 5.485 27 C 0.186 3.814 28 C -0.100 4.100 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.270 0.730 35 H 0.403 0.597 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.174 0.826 42 H 0.160 0.840 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 7.898 -21.275 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.147 3.853 4 H 0.048 0.952 5 C -0.572 4.572 6 H 0.074 0.926 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.180 1.180 13 N -0.343 5.343 14 C 0.340 3.660 15 O -0.434 6.434 16 C -0.190 4.190 17 C -0.045 4.045 18 C -0.090 4.090 19 C -0.167 4.167 20 C 0.078 3.922 21 O -0.244 6.244 22 C -0.081 4.081 23 C -0.168 4.168 24 C -0.084 4.084 25 C -0.023 4.023 26 N -0.194 5.194 27 C 0.033 3.967 28 C -0.157 4.157 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.239 0.761 36 H 0.180 0.820 37 H 0.166 0.834 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.191 0.809 42 H 0.178 0.822 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.163 8.212 -20.679 26.375 hybrid contribution 1.202 -0.797 0.576 1.553 sum -12.961 7.415 -20.103 25.041 Atomic orbital electron populations 1.21767 0.95046 1.00593 1.01759 1.22217 0.95987 0.98339 1.01087 1.18840 0.93251 0.89711 0.83480 0.95245 1.21275 0.90325 1.38635 1.06998 0.92622 1.25544 0.95723 0.95848 0.99853 1.69977 1.10342 1.46103 1.30869 0.86043 0.79497 0.79967 0.78193 1.18606 1.22292 1.17975 1.45948 1.15305 1.55728 1.17313 1.18163 0.82061 0.78555 0.87194 1.90689 1.51621 1.60040 1.41059 1.20813 0.98415 1.04708 0.95065 1.22203 0.98413 0.93519 0.90327 1.18517 0.95975 0.99915 0.94590 1.20259 1.01931 1.04327 0.90174 1.18769 0.90836 0.95503 0.87138 1.86116 1.46588 1.72184 1.19497 1.23450 1.01959 0.97063 0.85657 1.21487 0.93597 1.01007 1.00711 1.20890 1.00828 0.97292 0.89397 1.19385 0.91326 0.97724 0.93881 1.67840 1.32924 1.19852 0.98749 1.21628 0.91470 0.89464 0.94139 1.20966 0.98350 1.03055 0.93358 0.92429 0.93888 0.92867 0.91427 0.93659 0.92098 0.76146 0.81994 0.83361 0.91132 0.86427 0.91036 0.80863 0.82235 0.89962 0.89285 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.51 71.98 0.61 -4.43 16 2 C -0.14 -5.81 5.11 30.60 0.16 -5.65 16 3 C 0.25 11.58 1.83 44.25 0.08 11.67 16 4 H 0.03 1.51 6.63 -2.39 -0.02 1.49 16 5 C -0.53 -28.69 9.31 25.60 0.24 -28.45 16 6 H 0.06 3.19 7.98 -2.91 -0.02 3.16 16 7 C 0.03 1.68 5.45 84.65 0.46 2.14 16 8 N -0.93 -55.73 13.96 21.45 0.30 -55.43 16 9 Si 0.94 44.18 24.41 68.60 1.67 45.85 16 10 H -0.26 -11.58 6.83 99.48 0.68 -10.90 16 11 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.26 -11.82 6.53 99.48 0.65 -11.17 16 13 N -0.69 -26.79 4.97 -449.05 -2.23 -29.02 16 14 C 0.55 20.41 6.26 86.76 0.54 20.95 16 15 O -0.55 -22.50 10.44 -3.91 -0.04 -22.55 16 16 C -0.18 -5.84 5.89 -20.00 -0.12 -5.96 16 17 C -0.02 -0.49 9.38 23.02 0.22 -0.27 16 18 C -0.09 -2.23 5.74 -21.29 -0.12 -2.35 16 19 C -0.15 -3.17 9.68 22.43 0.22 -2.95 16 20 C 0.12 2.25 6.64 22.27 0.15 2.39 16 21 O -0.33 -5.34 10.47 -92.36 -0.97 -6.31 16 22 C 0.01 0.09 9.80 113.37 1.11 1.20 16 23 C -0.15 -2.14 8.94 22.14 0.20 -1.94 16 24 C -0.07 -1.22 9.96 22.33 0.22 -1.00 16 25 C 0.10 2.55 6.61 40.30 0.27 2.82 16 26 N -0.48 -14.13 10.20 -175.79 -1.79 -15.93 16 27 C 0.19 5.76 6.82 43.28 0.30 6.05 16 28 C -0.10 -2.89 8.82 71.24 0.63 -2.26 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.70 7.84 -2.39 -0.02 1.68 16 31 H 0.05 1.98 5.64 -2.39 -0.01 1.96 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.05 2.00 3.21 -2.39 -0.01 1.99 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.40 13.78 6.65 -92.71 -0.62 13.16 16 36 H 0.16 3.69 6.53 -2.91 -0.02 3.67 16 37 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 39 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.07 0.29 7.62 -2.38 -0.02 0.27 16 41 H 0.17 1.15 6.22 -2.91 -0.02 1.13 16 42 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.09 2.91 5.81 -2.39 -0.01 2.89 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -68.78 356.59 2.43 -66.35 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.34 Total: 25.08 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.15 Total: -8.05 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.73 Total: -100.38 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.01 Total: -28.86 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -68.78 2.43 -66.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.104 kcal (2) G-P(sol) polarization free energy of solvation -68.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds